data_8B57 # _model_server_result.job_id qgeTmbWM8wYxpJ8q9MGBnQ _model_server_result.datetime_utc '2024-11-25 10:45:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8b57 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":604}' # _entry.id 8B57 # _exptl.entry_id 8B57 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8B57 _cell.length_a 162.03 _cell.length_b 162.03 _cell.length_c 162.03 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8B57 _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 I N N ? 6 J N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide 4 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing 4 ? 3 4 3 MAN BMA C1 O1 . O3 HO3 . sing 5 ? 3 5 4 MAN MAN C1 O1 . O2 HO2 . sing 6 ? 3 6 5 MAN MAN C1 O1 . O2 HO2 . sing 7 ? 3 7 3 MAN BMA C1 O1 . O6 HO6 . sing 8 ? 3 8 7 MAN MAN C1 O1 . O3 HO3 . sing 9 ? 3 9 8 MAN MAN C1 O1 . O2 HO2 . sing 10 ? 3 10 7 MAN MAN C1 O1 . O6 HO6 . sing 11 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 12 ? 4 3 2 BMA NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 1023 NAG 2 n B NAG 2 B 2 NAG A 1024 NAG 3 n C NAG 1 C 1 NAG A 1025 NAG 3 n C NAG 2 C 2 NAG A 1026 NAG 3 n C BMA 3 C 3 BMA A 1027 BMA 3 n C MAN 4 C 4 MAN A 1028 MAN 3 n C MAN 5 C 5 MAN A 1029 MAN 3 n C MAN 6 C 6 MAN A 1030 MAN 3 n C MAN 7 C 7 MAN A 1031 MAN 3 n C MAN 8 C 8 MAN A 1033 MAN 3 n C MAN 9 C 9 MAN A 1041 MAN 3 n C MAN 10 C 10 MAN A 1032 MAN 4 n D NAG 1 G 1 NAG A 1035 NAG 4 n D NAG 2 G 2 NAG A 1036 NAG 4 n D BMA 3 G 3 BMA A 1037 BMA 2 n E NAG 1 H 1 NAG A 1038 NAG 2 n E NAG 2 H 2 NAG A 1039 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 186 A CYS 227 1_555 A SG CYS 254 A CYS 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? disulf ? disulf2 A SG CYS 295 A CYS 336 1_555 A SG CYS 309 A CYS 350 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? disulf ? disulf3 A SG CYS 338 A CYS 379 1_555 A SG CYS 370 A CYS 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? covale ? covale1 A ND2 ASN 59 A ASN 100 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale2 A ND2 ASN 121 A ASN 162 1_555 F C1 NAG . A NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale3 A ND2 ASN 185 A ASN 226 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale4 A ND2 ASN 203 A ASN 244 1_555 G C1 NAG . A NAG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? covale ? covale5 A ND2 ASN 287 A ASN 328 1_555 D C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? covale ? covale6 A ND2 ASN 314 A ASN 355 1_555 E C1 NAG . H NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale7 A ND2 ASN 405 A ASN 446 1_555 H C1 NAG . A NAG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale8 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.016 ? covale ? covale9 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.023 ? covale ? covale10 C O4 NAG . C NAG 2 1_555 C C1 BMA . C BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.019 ? covale ? covale11 C O3 BMA . C BMA 3 1_555 C C1 MAN . C MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.017 ? covale ? covale12 C O6 BMA . C BMA 3 1_555 C C1 MAN . C MAN 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.021 ? covale ? covale13 C O2 MAN . C MAN 4 1_555 C C1 MAN . C MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.023 ? covale ? covale14 C O2 MAN . C MAN 5 1_555 C C1 MAN . C MAN 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.017 ? covale ? covale15 C O3 MAN . C MAN 7 1_555 C C1 MAN . C MAN 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.019 ? covale ? covale16 C O6 MAN . C MAN 7 1_555 C C1 MAN . C MAN 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.022 ? covale ? covale17 C O2 MAN . C MAN 8 1_555 C C1 MAN . C MAN 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.024 ? covale ? covale18 D O4 NAG . G NAG 1 1_555 D C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.034 ? covale ? covale19 D O4 NAG . G NAG 2 1_555 D C1 BMA . G BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.029 ? covale ? covale20 E O4 NAG . H NAG 1 1_555 E C1 NAG . H NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.021 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 190 n n C1 C2 GOL sing 191 n n C1 H11 GOL sing 192 n n C1 H12 GOL sing 193 n n O1 HO1 GOL sing 194 n n C2 O2 GOL sing 195 n n C2 C3 GOL sing 196 n n C2 H2 GOL sing 197 n n O2 HO2 GOL sing 198 n n C3 O3 GOL sing 199 n n C3 H31 GOL sing 200 n n C3 H32 GOL sing 201 n n O3 HO3 GOL sing 202 n n # _atom_sites.entry_id 8B57 _atom_sites.fract_transf_matrix[1][1] 0.006172 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006172 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006172 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 5 NAG A 1 601 1022 NAG NAG . G 5 NAG A 1 602 1034 NAG NAG . H 5 NAG A 1 603 1040 NAG NAG . I 6 GOL A 1 604 1 GOL GOL . J 6 GOL A 1 605 2 GOL GOL . K 7 PEG A 1 606 1 PEG PEG . L 8 PG4 A 1 607 2 PG4 PG4 . M 9 1PE A 1 608 3 1PE 1PE . N 10 HOH A 1 701 102 HOH HOH . N 10 HOH A 2 702 2 HOH HOH . N 10 HOH A 3 703 22 HOH HOH . N 10 HOH A 4 704 80 HOH HOH . N 10 HOH A 5 705 84 HOH HOH . N 10 HOH A 6 706 75 HOH HOH . N 10 HOH A 7 707 49 HOH HOH . N 10 HOH A 8 708 52 HOH HOH . N 10 HOH A 9 709 20 HOH HOH . N 10 HOH A 10 710 55 HOH HOH . N 10 HOH A 11 711 29 HOH HOH . N 10 HOH A 12 712 23 HOH HOH . N 10 HOH A 13 713 66 HOH HOH . N 10 HOH A 14 714 97 HOH HOH . N 10 HOH A 15 715 51 HOH HOH . N 10 HOH A 16 716 48 HOH HOH . N 10 HOH A 17 717 59 HOH HOH . N 10 HOH A 18 718 21 HOH HOH . N 10 HOH A 19 719 64 HOH HOH . N 10 HOH A 20 720 56 HOH HOH . N 10 HOH A 21 721 71 HOH HOH . N 10 HOH A 22 722 72 HOH HOH . N 10 HOH A 23 723 37 HOH HOH . N 10 HOH A 24 724 12 HOH HOH . N 10 HOH A 25 725 81 HOH HOH . N 10 HOH A 26 726 90 HOH HOH . N 10 HOH A 27 727 65 HOH HOH . N 10 HOH A 28 728 60 HOH HOH . N 10 HOH A 29 729 18 HOH HOH . N 10 HOH A 30 730 27 HOH HOH . N 10 HOH A 31 731 77 HOH HOH . N 10 HOH A 32 732 10 HOH HOH . N 10 HOH A 33 733 87 HOH HOH . N 10 HOH A 34 734 5 HOH HOH . N 10 HOH A 35 735 32 HOH HOH . N 10 HOH A 36 736 86 HOH HOH . N 10 HOH A 37 737 61 HOH HOH . N 10 HOH A 38 738 34 HOH HOH . N 10 HOH A 39 739 43 HOH HOH . N 10 HOH A 40 740 25 HOH HOH . N 10 HOH A 41 741 8 HOH HOH . N 10 HOH A 42 742 100 HOH HOH . N 10 HOH A 43 743 88 HOH HOH . N 10 HOH A 44 744 38 HOH HOH . N 10 HOH A 45 745 30 HOH HOH . N 10 HOH A 46 746 47 HOH HOH . N 10 HOH A 47 747 74 HOH HOH . N 10 HOH A 48 748 35 HOH HOH . N 10 HOH A 49 749 31 HOH HOH . N 10 HOH A 50 750 78 HOH HOH . N 10 HOH A 51 751 33 HOH HOH . N 10 HOH A 52 752 50 HOH HOH . N 10 HOH A 53 753 57 HOH HOH . N 10 HOH A 54 754 105 HOH HOH . N 10 HOH A 55 755 62 HOH HOH . N 10 HOH A 56 756 93 HOH HOH . N 10 HOH A 57 757 58 HOH HOH . N 10 HOH A 58 758 53 HOH HOH . N 10 HOH A 59 759 39 HOH HOH . N 10 HOH A 60 760 42 HOH HOH . N 10 HOH A 61 761 108 HOH HOH . N 10 HOH A 62 762 99 HOH HOH . N 10 HOH A 63 763 67 HOH HOH . N 10 HOH A 64 764 28 HOH HOH . N 10 HOH A 65 765 26 HOH HOH . N 10 HOH A 66 766 11 HOH HOH . N 10 HOH A 67 767 109 HOH HOH . N 10 HOH A 68 768 92 HOH HOH . N 10 HOH A 69 769 95 HOH HOH . N 10 HOH A 70 770 79 HOH HOH . N 10 HOH A 71 771 7 HOH HOH . N 10 HOH A 72 772 19 HOH HOH . N 10 HOH A 73 773 1 HOH HOH . N 10 HOH A 74 774 45 HOH HOH . N 10 HOH A 75 775 41 HOH HOH . N 10 HOH A 76 776 85 HOH HOH . N 10 HOH A 77 777 83 HOH HOH . N 10 HOH A 78 778 15 HOH HOH . N 10 HOH A 79 779 101 HOH HOH . N 10 HOH A 80 780 36 HOH HOH . N 10 HOH A 81 781 68 HOH HOH . N 10 HOH A 82 782 17 HOH HOH . N 10 HOH A 83 783 73 HOH HOH . N 10 HOH A 84 784 69 HOH HOH . N 10 HOH A 85 785 6 HOH HOH . N 10 HOH A 86 786 46 HOH HOH . N 10 HOH A 87 787 70 HOH HOH . N 10 HOH A 88 788 103 HOH HOH . N 10 HOH A 89 789 24 HOH HOH . N 10 HOH A 90 790 94 HOH HOH . N 10 HOH A 91 791 44 HOH HOH . N 10 HOH A 92 792 4 HOH HOH . N 10 HOH A 93 793 76 HOH HOH . N 10 HOH A 94 794 13 HOH HOH . N 10 HOH A 95 795 9 HOH HOH . N 10 HOH A 96 796 98 HOH HOH . N 10 HOH A 97 797 16 HOH HOH . N 10 HOH A 98 798 89 HOH HOH . N 10 HOH A 99 799 96 HOH HOH . N 10 HOH A 100 800 82 HOH HOH . N 10 HOH A 101 801 3 HOH HOH . N 10 HOH A 102 802 63 HOH HOH . N 10 HOH A 103 803 54 HOH HOH . N 10 HOH A 104 804 14 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . I 6 35.53 55.797 -16.06 1 89.99 ? C1 GOL 604 A 1 HETATM 2 O O1 GOL . . . I 6 35.616 57.113 -15.52 1 89.22 ? O1 GOL 604 A 1 HETATM 3 C C2 GOL . . . I 6 36.901 55.251 -16.394 1 90.67 ? C2 GOL 604 A 1 HETATM 4 O O2 GOL . . . I 6 37.621 54.99 -15.189 1 95.25 ? O2 GOL 604 A 1 HETATM 5 C C3 GOL . . . I 6 36.854 53.997 -17.24 1 84.32 ? C3 GOL 604 A 1 HETATM 6 O O3 GOL . . . I 6 38.163 53.495 -17.489 1 75.09 ? O3 GOL 604 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 253 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #