data_8B5B # _model_server_result.job_id CmgZsU6JgS3G7O7bU8fe7Q _model_server_result.datetime_utc '2024-10-19 03:45:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8b5b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":201}' # _entry.id 8B5B # _exptl.entry_id 8B5B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 106.12 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DI(HYDROXYETHYL)ETHER _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8B5B _cell.length_a 39.508 _cell.length_b 51.78 _cell.length_c 170.739 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8B5B _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,G 1 1 B,D,H,J 2 1 C,E,F,I,K 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 D C GLY 5 D GLY 4 1_555 D N ALY 6 D ALY 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 D C ALY 6 D ALY 5 1_555 D N GLY 7 D GLY 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale3 D C GLY 8 D GLY 7 1_555 D N P1V 9 D P1V 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 D C P1V 9 D P1V 8 1_555 D N GLY 10 D GLY 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale5 E C ACE 1 E ACE 0 1_555 E N SER 2 E SER 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale6 E C GLY 5 E GLY 4 1_555 E N ALY 6 E ALY 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale7 E C ALY 6 E ALY 5 1_555 E N GLY 7 E GLY 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale8 E C GLY 8 E GLY 7 1_555 E N P1V 9 E P1V 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale9 E C P1V 9 E P1V 8 1_555 E N GLY 10 E GLY 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? # _chem_comp.formula 'C4 H10 O3' _chem_comp.formula_weight 106.12 _chem_comp.id PEG _chem_comp.mon_nstd_flag . _chem_comp.name DI(HYDROXYETHYL)ETHER _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PEG sing 302 n n C1 C2 PEG sing 303 n n C1 H11 PEG sing 304 n n C1 H12 PEG sing 305 n n O1 HO1 PEG sing 306 n n C2 O2 PEG sing 307 n n C2 H21 PEG sing 308 n n C2 H22 PEG sing 309 n n O2 C3 PEG sing 310 n n C3 C4 PEG sing 311 n n C3 H31 PEG sing 312 n n C3 H32 PEG sing 313 n n C4 O4 PEG sing 314 n n C4 H41 PEG sing 315 n n C4 H42 PEG sing 316 n n O4 HO4 PEG sing 317 n n # _atom_sites.entry_id 8B5B _atom_sites.fract_transf_matrix[1][1] 0.025311 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019312 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005857 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 3 PEG C 1 201 201 PEG PEG . G 4 HOH A 1 201 89 HOH HOH . G 4 HOH A 2 202 138 HOH HOH . G 4 HOH A 3 203 136 HOH HOH . G 4 HOH A 4 204 48 HOH HOH . G 4 HOH A 5 205 166 HOH HOH . G 4 HOH A 6 206 95 HOH HOH . G 4 HOH A 7 207 118 HOH HOH . G 4 HOH A 8 208 260 HOH HOH . G 4 HOH A 9 209 23 HOH HOH . G 4 HOH A 10 210 170 HOH HOH . G 4 HOH A 11 211 13 HOH HOH . G 4 HOH A 12 212 176 HOH HOH . G 4 HOH A 13 213 14 HOH HOH . G 4 HOH A 14 214 151 HOH HOH . G 4 HOH A 15 215 145 HOH HOH . G 4 HOH A 16 216 311 HOH HOH . G 4 HOH A 17 217 195 HOH HOH . G 4 HOH A 18 218 187 HOH HOH . G 4 HOH A 19 219 227 HOH HOH . G 4 HOH A 20 220 150 HOH HOH . G 4 HOH A 21 221 1 HOH HOH . G 4 HOH A 22 222 168 HOH HOH . G 4 HOH A 23 223 135 HOH HOH . G 4 HOH A 24 224 75 HOH HOH . G 4 HOH A 25 225 37 HOH HOH . G 4 HOH A 26 226 38 HOH HOH . G 4 HOH A 27 227 25 HOH HOH . G 4 HOH A 28 228 116 HOH HOH . G 4 HOH A 29 229 216 HOH HOH . G 4 HOH A 30 230 27 HOH HOH . G 4 HOH A 31 231 67 HOH HOH . G 4 HOH A 32 232 220 HOH HOH . G 4 HOH A 33 233 172 HOH HOH . G 4 HOH A 34 234 300 HOH HOH . G 4 HOH A 35 235 87 HOH HOH . G 4 HOH A 36 236 141 HOH HOH . G 4 HOH A 37 237 93 HOH HOH . G 4 HOH A 38 238 132 HOH HOH . G 4 HOH A 39 239 69 HOH HOH . G 4 HOH A 40 240 11 HOH HOH . G 4 HOH A 41 241 280 HOH HOH . G 4 HOH A 42 242 83 HOH HOH . G 4 HOH A 43 243 127 HOH HOH . G 4 HOH A 44 244 183 HOH HOH . G 4 HOH A 45 245 181 HOH HOH . G 4 HOH A 46 246 98 HOH HOH . G 4 HOH A 47 247 285 HOH HOH . G 4 HOH A 48 248 35 HOH HOH . G 4 HOH A 49 249 237 HOH HOH . G 4 HOH A 50 250 130 HOH HOH . G 4 HOH A 51 251 40 HOH HOH . G 4 HOH A 52 252 302 HOH HOH . G 4 HOH A 53 253 239 HOH HOH . G 4 HOH A 54 254 108 HOH HOH . G 4 HOH A 55 255 104 HOH HOH . G 4 HOH A 56 256 163 HOH HOH . G 4 HOH A 57 257 206 HOH HOH . G 4 HOH A 58 258 144 HOH HOH . G 4 HOH A 59 259 31 HOH HOH . G 4 HOH A 60 260 254 HOH HOH . G 4 HOH A 61 261 223 HOH HOH . G 4 HOH A 62 262 215 HOH HOH . G 4 HOH A 63 263 190 HOH HOH . G 4 HOH A 64 264 157 HOH HOH . G 4 HOH A 65 265 214 HOH HOH . G 4 HOH A 66 266 175 HOH HOH . G 4 HOH A 67 267 240 HOH HOH . G 4 HOH A 68 268 301 HOH HOH . G 4 HOH A 69 269 287 HOH HOH . G 4 HOH A 70 270 178 HOH HOH . G 4 HOH A 71 271 188 HOH HOH . G 4 HOH A 72 272 262 HOH HOH . G 4 HOH A 73 273 304 HOH HOH . G 4 HOH A 74 274 221 HOH HOH . G 4 HOH A 75 275 268 HOH HOH . G 4 HOH A 76 276 213 HOH HOH . G 4 HOH A 77 277 263 HOH HOH . G 4 HOH A 78 278 226 HOH HOH . G 4 HOH A 79 279 230 HOH HOH . G 4 HOH A 80 280 228 HOH HOH . G 4 HOH A 81 281 160 HOH HOH . G 4 HOH A 82 282 306 HOH HOH . H 4 HOH B 1 201 193 HOH HOH . H 4 HOH B 2 202 134 HOH HOH . H 4 HOH B 3 203 8 HOH HOH . H 4 HOH B 4 204 149 HOH HOH . H 4 HOH B 5 205 65 HOH HOH . H 4 HOH B 6 206 92 HOH HOH . H 4 HOH B 7 207 275 HOH HOH . H 4 HOH B 8 208 63 HOH HOH . H 4 HOH B 9 209 46 HOH HOH . H 4 HOH B 10 210 167 HOH HOH . H 4 HOH B 11 211 18 HOH HOH . H 4 HOH B 12 212 310 HOH HOH . H 4 HOH B 13 213 267 HOH HOH . H 4 HOH B 14 214 19 HOH HOH . H 4 HOH B 15 215 251 HOH HOH . H 4 HOH B 16 216 71 HOH HOH . H 4 HOH B 17 217 109 HOH HOH . H 4 HOH B 18 218 58 HOH HOH . H 4 HOH B 19 219 288 HOH HOH . H 4 HOH B 20 220 102 HOH HOH . H 4 HOH B 21 221 9 HOH HOH . H 4 HOH B 22 222 312 HOH HOH . H 4 HOH B 23 223 203 HOH HOH . H 4 HOH B 24 224 196 HOH HOH . H 4 HOH B 25 225 36 HOH HOH . H 4 HOH B 26 226 7 HOH HOH . H 4 HOH B 27 227 224 HOH HOH . H 4 HOH B 28 228 68 HOH HOH . H 4 HOH B 29 229 162 HOH HOH . H 4 HOH B 30 230 207 HOH HOH . H 4 HOH B 31 231 88 HOH HOH . H 4 HOH B 32 232 291 HOH HOH . H 4 HOH B 33 233 225 HOH HOH . H 4 HOH B 34 234 269 HOH HOH . H 4 HOH B 35 235 47 HOH HOH . H 4 HOH B 36 236 115 HOH HOH . H 4 HOH B 37 237 123 HOH HOH . H 4 HOH B 38 238 159 HOH HOH . H 4 HOH B 39 239 81 HOH HOH . H 4 HOH B 40 240 32 HOH HOH . H 4 HOH B 41 241 112 HOH HOH . H 4 HOH B 42 242 21 HOH HOH . H 4 HOH B 43 243 152 HOH HOH . H 4 HOH B 44 244 258 HOH HOH . H 4 HOH B 45 245 259 HOH HOH . H 4 HOH B 46 246 177 HOH HOH . H 4 HOH B 47 247 55 HOH HOH . H 4 HOH B 48 248 90 HOH HOH . H 4 HOH B 49 249 28 HOH HOH . H 4 HOH B 50 250 148 HOH HOH . H 4 HOH B 51 251 192 HOH HOH . H 4 HOH B 52 252 198 HOH HOH . H 4 HOH B 53 253 179 HOH HOH . H 4 HOH B 54 254 158 HOH HOH . H 4 HOH B 55 255 17 HOH HOH . H 4 HOH B 56 256 56 HOH HOH . H 4 HOH B 57 257 202 HOH HOH . H 4 HOH B 58 258 82 HOH HOH . H 4 HOH B 59 259 246 HOH HOH . H 4 HOH B 60 260 307 HOH HOH . H 4 HOH B 61 261 303 HOH HOH . H 4 HOH B 62 262 243 HOH HOH . H 4 HOH B 63 263 140 HOH HOH . H 4 HOH B 64 264 121 HOH HOH . H 4 HOH B 65 265 43 HOH HOH . H 4 HOH B 66 266 120 HOH HOH . H 4 HOH B 67 267 211 HOH HOH . H 4 HOH B 68 268 257 HOH HOH . H 4 HOH B 69 269 264 HOH HOH . I 4 HOH C 1 301 174 HOH HOH . I 4 HOH C 2 302 233 HOH HOH . I 4 HOH C 3 303 114 HOH HOH . I 4 HOH C 4 304 16 HOH HOH . I 4 HOH C 5 305 139 HOH HOH . I 4 HOH C 6 306 78 HOH HOH . I 4 HOH C 7 307 45 HOH HOH . I 4 HOH C 8 308 60 HOH HOH . I 4 HOH C 9 309 42 HOH HOH . I 4 HOH C 10 310 232 HOH HOH . I 4 HOH C 11 311 3 HOH HOH . I 4 HOH C 12 312 53 HOH HOH . I 4 HOH C 13 313 186 HOH HOH . I 4 HOH C 14 314 5 HOH HOH . I 4 HOH C 15 315 29 HOH HOH . I 4 HOH C 16 316 73 HOH HOH . I 4 HOH C 17 317 50 HOH HOH . I 4 HOH C 18 318 77 HOH HOH . I 4 HOH C 19 319 70 HOH HOH . I 4 HOH C 20 320 133 HOH HOH . I 4 HOH C 21 321 125 HOH HOH . I 4 HOH C 22 322 61 HOH HOH . I 4 HOH C 23 323 41 HOH HOH . I 4 HOH C 24 324 49 HOH HOH . I 4 HOH C 25 325 111 HOH HOH . I 4 HOH C 26 326 12 HOH HOH . I 4 HOH C 27 327 20 HOH HOH . I 4 HOH C 28 328 86 HOH HOH . I 4 HOH C 29 329 122 HOH HOH . I 4 HOH C 30 330 30 HOH HOH . I 4 HOH C 31 331 153 HOH HOH . I 4 HOH C 32 332 6 HOH HOH . I 4 HOH C 33 333 131 HOH HOH . I 4 HOH C 34 334 54 HOH HOH . I 4 HOH C 35 335 105 HOH HOH . I 4 HOH C 36 336 10 HOH HOH . I 4 HOH C 37 337 99 HOH HOH . I 4 HOH C 38 338 76 HOH HOH . I 4 HOH C 39 339 276 HOH HOH . I 4 HOH C 40 340 129 HOH HOH . I 4 HOH C 41 341 52 HOH HOH . I 4 HOH C 42 342 107 HOH HOH . I 4 HOH C 43 343 272 HOH HOH . I 4 HOH C 44 344 39 HOH HOH . I 4 HOH C 45 345 205 HOH HOH . I 4 HOH C 46 346 2 HOH HOH . I 4 HOH C 47 347 222 HOH HOH . I 4 HOH C 48 348 33 HOH HOH . I 4 HOH C 49 349 64 HOH HOH . I 4 HOH C 50 350 59 HOH HOH . I 4 HOH C 51 351 256 HOH HOH . I 4 HOH C 52 352 26 HOH HOH . I 4 HOH C 53 353 4 HOH HOH . I 4 HOH C 54 354 137 HOH HOH . I 4 HOH C 55 355 22 HOH HOH . I 4 HOH C 56 356 229 HOH HOH . I 4 HOH C 57 357 74 HOH HOH . I 4 HOH C 58 358 72 HOH HOH . I 4 HOH C 59 359 91 HOH HOH . I 4 HOH C 60 360 164 HOH HOH . I 4 HOH C 61 361 15 HOH HOH . I 4 HOH C 62 362 143 HOH HOH . I 4 HOH C 63 363 128 HOH HOH . I 4 HOH C 64 364 165 HOH HOH . I 4 HOH C 65 365 79 HOH HOH . I 4 HOH C 66 366 66 HOH HOH . I 4 HOH C 67 367 236 HOH HOH . I 4 HOH C 68 368 142 HOH HOH . I 4 HOH C 69 369 34 HOH HOH . I 4 HOH C 70 370 265 HOH HOH . I 4 HOH C 71 371 247 HOH HOH . I 4 HOH C 72 372 297 HOH HOH . I 4 HOH C 73 373 169 HOH HOH . I 4 HOH C 74 374 208 HOH HOH . I 4 HOH C 75 375 171 HOH HOH . I 4 HOH C 76 376 210 HOH HOH . I 4 HOH C 77 377 212 HOH HOH . I 4 HOH C 78 378 244 HOH HOH . I 4 HOH C 79 379 51 HOH HOH . I 4 HOH C 80 380 103 HOH HOH . I 4 HOH C 81 381 154 HOH HOH . I 4 HOH C 82 382 57 HOH HOH . I 4 HOH C 83 383 277 HOH HOH . I 4 HOH C 84 384 44 HOH HOH . I 4 HOH C 85 385 124 HOH HOH . I 4 HOH C 86 386 94 HOH HOH . I 4 HOH C 87 387 101 HOH HOH . J 4 HOH D 1 101 84 HOH HOH . J 4 HOH D 2 102 161 HOH HOH . J 4 HOH D 3 103 97 HOH HOH . J 4 HOH D 4 104 279 HOH HOH . K 4 HOH E 1 101 100 HOH HOH . K 4 HOH E 2 102 110 HOH HOH . K 4 HOH E 3 103 182 HOH HOH . K 4 HOH E 4 104 255 HOH HOH . K 4 HOH E 5 105 305 HOH HOH . K 4 HOH E 6 106 270 HOH HOH . K 4 HOH E 7 107 155 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PEG . . . F 3 -47.262 31.189 -1.682 1 58.63 ? C1 PEG 201 C 1 HETATM 2 O O1 PEG . . . F 3 -46.149 31.048 -2.54 1 58.4 ? O1 PEG 201 C 1 HETATM 3 C C2 PEG . . . F 3 -47.133 30.365 -0.441 1 58.58 ? C2 PEG 201 C 1 HETATM 4 O O2 PEG . . . F 3 -47.012 28.988 -0.779 1 58.24 ? O2 PEG 201 C 1 HETATM 5 C C3 PEG . . . F 3 -47.178 28.134 0.346 1 58.37 ? C3 PEG 201 C 1 HETATM 6 C C4 PEG . . . F 3 -47.267 26.712 -0.103 1 58.57 ? C4 PEG 201 C 1 HETATM 7 O O4 PEG . . . F 3 -47.871 25.88 0.868 1 58.57 ? O4 PEG 201 C 1 # _model_server_stats.io_time_ms 134 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 7 #