data_8B5E # _model_server_result.job_id 1AxbzH0xoin0Aw2K4EqWeA _model_server_result.datetime_utc '2024-11-23 03:56:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8b5e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":301}' # _entry.id 8B5E # _exptl.entry_id 8B5E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 92.4 _cell.angle_beta 92.37 _cell.angle_gamma 94.11 _cell.entry_id 8B5E _cell.length_a 34.67 _cell.length_b 53.08 _cell.length_c 54.08 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8B5E _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id O _struct_conn.ptnr1_label_comp_id GLY _struct_conn.ptnr1_label_seq_id 183 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id GLY _struct_conn.ptnr1_auth_seq_id 209 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id D _struct_conn.ptnr2_label_atom_id NA _struct_conn.ptnr2_label_comp_id NA _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id NA _struct_conn.ptnr2_auth_seq_id 302 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id A _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.922 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 116 n n C1 C2 GOL sing 117 n n C1 H11 GOL sing 118 n n C1 H12 GOL sing 119 n n O1 HO1 GOL sing 120 n n C2 O2 GOL sing 121 n n C2 C3 GOL sing 122 n n C2 H2 GOL sing 123 n n O2 HO2 GOL sing 124 n n C3 O3 GOL sing 125 n n C3 H31 GOL sing 126 n n C3 H32 GOL sing 127 n n O3 HO3 GOL sing 128 n n # _atom_sites.entry_id 8B5E _atom_sites.fract_transf_matrix[1][1] 0.028843 _atom_sites.fract_transf_matrix[1][2] 0.002073 _atom_sites.fract_transf_matrix[1][3] 0.001288 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018888 _atom_sites.fract_transf_matrix[2][3] 0.000851 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018526 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ARG A 1 301 3 ARG ARG . D 3 NA A 1 302 1 NA NA . E 4 GOL B 1 301 301 GOL GOL . F 2 ARG B 1 302 2 ARG ARG . G 5 PEG B 1 303 1 PEG PEG . H 5 PEG B 1 304 2 PEG PEG . I 5 PEG B 1 305 3 PEG PEG . J 5 PEG B 1 306 10 PEG PEG . K 5 PEG B 1 307 11 PEG PEG . L 6 PGE B 1 308 1 PGE PGE . M 7 HOH A 1 401 217 HOH HOH . M 7 HOH A 2 402 112 HOH HOH . M 7 HOH A 3 403 293 HOH HOH . M 7 HOH A 4 404 189 HOH HOH . M 7 HOH A 5 405 227 HOH HOH . M 7 HOH A 6 406 187 HOH HOH . M 7 HOH A 7 407 153 HOH HOH . M 7 HOH A 8 408 92 HOH HOH . M 7 HOH A 9 409 284 HOH HOH . M 7 HOH A 10 410 188 HOH HOH . M 7 HOH A 11 411 4 HOH HOH . M 7 HOH A 12 412 254 HOH HOH . M 7 HOH A 13 413 259 HOH HOH . M 7 HOH A 14 414 120 HOH HOH . M 7 HOH A 15 415 336 HOH HOH . M 7 HOH A 16 416 156 HOH HOH . M 7 HOH A 17 417 14 HOH HOH . M 7 HOH A 18 418 36 HOH HOH . M 7 HOH A 19 419 51 HOH HOH . M 7 HOH A 20 420 91 HOH HOH . M 7 HOH A 21 421 78 HOH HOH . M 7 HOH A 22 422 255 HOH HOH . M 7 HOH A 23 423 1 HOH HOH . M 7 HOH A 24 424 257 HOH HOH . M 7 HOH A 25 425 40 HOH HOH . M 7 HOH A 26 426 38 HOH HOH . M 7 HOH A 27 427 12 HOH HOH . M 7 HOH A 28 428 222 HOH HOH . M 7 HOH A 29 429 18 HOH HOH . M 7 HOH A 30 430 110 HOH HOH . M 7 HOH A 31 431 150 HOH HOH . M 7 HOH A 32 432 242 HOH HOH . M 7 HOH A 33 433 145 HOH HOH . M 7 HOH A 34 434 246 HOH HOH . M 7 HOH A 35 435 72 HOH HOH . M 7 HOH A 36 436 134 HOH HOH . M 7 HOH A 37 437 176 HOH HOH . M 7 HOH A 38 438 114 HOH HOH . M 7 HOH A 39 439 100 HOH HOH . M 7 HOH A 40 440 258 HOH HOH . M 7 HOH A 41 441 98 HOH HOH . M 7 HOH A 42 442 11 HOH HOH . M 7 HOH A 43 443 204 HOH HOH . M 7 HOH A 44 444 66 HOH HOH . M 7 HOH A 45 445 177 HOH HOH . M 7 HOH A 46 446 279 HOH HOH . M 7 HOH A 47 447 35 HOH HOH . M 7 HOH A 48 448 155 HOH HOH . M 7 HOH A 49 449 74 HOH HOH . M 7 HOH A 50 450 37 HOH HOH . M 7 HOH A 51 451 71 HOH HOH . M 7 HOH A 52 452 144 HOH HOH . M 7 HOH A 53 453 123 HOH HOH . M 7 HOH A 54 454 164 HOH HOH . M 7 HOH A 55 455 243 HOH HOH . M 7 HOH A 56 456 146 HOH HOH . M 7 HOH A 57 457 303 HOH HOH . M 7 HOH A 58 458 119 HOH HOH . M 7 HOH A 59 459 321 HOH HOH . M 7 HOH A 60 460 229 HOH HOH . M 7 HOH A 61 461 15 HOH HOH . M 7 HOH A 62 462 224 HOH HOH . M 7 HOH A 63 463 9 HOH HOH . M 7 HOH A 64 464 106 HOH HOH . M 7 HOH A 65 465 101 HOH HOH . M 7 HOH A 66 466 28 HOH HOH . M 7 HOH A 67 467 60 HOH HOH . M 7 HOH A 68 468 108 HOH HOH . M 7 HOH A 69 469 97 HOH HOH . M 7 HOH A 70 470 142 HOH HOH . M 7 HOH A 71 471 58 HOH HOH . M 7 HOH A 72 472 261 HOH HOH . M 7 HOH A 73 473 170 HOH HOH . M 7 HOH A 74 474 86 HOH HOH . M 7 HOH A 75 475 111 HOH HOH . M 7 HOH A 76 476 239 HOH HOH . M 7 HOH A 77 477 131 HOH HOH . M 7 HOH A 78 478 34 HOH HOH . M 7 HOH A 79 479 215 HOH HOH . M 7 HOH A 80 480 130 HOH HOH . M 7 HOH A 81 481 141 HOH HOH . M 7 HOH A 82 482 46 HOH HOH . M 7 HOH A 83 483 149 HOH HOH . M 7 HOH A 84 484 68 HOH HOH . M 7 HOH A 85 485 226 HOH HOH . M 7 HOH A 86 486 76 HOH HOH . M 7 HOH A 87 487 122 HOH HOH . M 7 HOH A 88 488 8 HOH HOH . M 7 HOH A 89 489 57 HOH HOH . M 7 HOH A 90 490 54 HOH HOH . M 7 HOH A 91 491 63 HOH HOH . M 7 HOH A 92 492 191 HOH HOH . M 7 HOH A 93 493 225 HOH HOH . M 7 HOH A 94 494 235 HOH HOH . M 7 HOH A 95 495 292 HOH HOH . M 7 HOH A 96 496 118 HOH HOH . M 7 HOH A 97 497 21 HOH HOH . M 7 HOH A 98 498 45 HOH HOH . M 7 HOH A 99 499 249 HOH HOH . M 7 HOH A 100 500 175 HOH HOH . M 7 HOH A 101 501 264 HOH HOH . M 7 HOH A 102 502 302 HOH HOH . M 7 HOH A 103 503 263 HOH HOH . M 7 HOH A 104 504 208 HOH HOH . M 7 HOH A 105 505 288 HOH HOH . M 7 HOH A 106 506 116 HOH HOH . M 7 HOH A 107 507 329 HOH HOH . M 7 HOH A 108 508 162 HOH HOH . M 7 HOH A 109 509 179 HOH HOH . M 7 HOH A 110 510 62 HOH HOH . M 7 HOH A 111 511 273 HOH HOH . M 7 HOH A 112 512 318 HOH HOH . M 7 HOH A 113 513 313 HOH HOH . M 7 HOH A 114 514 172 HOH HOH . M 7 HOH A 115 515 233 HOH HOH . M 7 HOH A 116 516 337 HOH HOH . M 7 HOH A 117 517 341 HOH HOH . M 7 HOH A 118 518 340 HOH HOH . M 7 HOH A 119 519 283 HOH HOH . M 7 HOH A 120 520 256 HOH HOH . M 7 HOH A 121 521 271 HOH HOH . M 7 HOH A 122 522 268 HOH HOH . M 7 HOH A 123 523 202 HOH HOH . M 7 HOH A 124 524 206 HOH HOH . M 7 HOH A 125 525 143 HOH HOH . M 7 HOH A 126 526 338 HOH HOH . M 7 HOH A 127 527 210 HOH HOH . M 7 HOH A 128 528 151 HOH HOH . N 7 HOH B 1 401 109 HOH HOH . N 7 HOH B 2 402 171 HOH HOH . N 7 HOH B 3 403 128 HOH HOH . N 7 HOH B 4 404 286 HOH HOH . N 7 HOH B 5 405 85 HOH HOH . N 7 HOH B 6 406 237 HOH HOH . N 7 HOH B 7 407 80 HOH HOH . N 7 HOH B 8 408 311 HOH HOH . N 7 HOH B 9 409 315 HOH HOH . N 7 HOH B 10 410 132 HOH HOH . N 7 HOH B 11 411 307 HOH HOH . N 7 HOH B 12 412 250 HOH HOH . N 7 HOH B 13 413 308 HOH HOH . N 7 HOH B 14 414 289 HOH HOH . N 7 HOH B 15 415 59 HOH HOH . N 7 HOH B 16 416 64 HOH HOH . N 7 HOH B 17 417 99 HOH HOH . N 7 HOH B 18 418 24 HOH HOH . N 7 HOH B 19 419 180 HOH HOH . N 7 HOH B 20 420 33 HOH HOH . N 7 HOH B 21 421 147 HOH HOH . N 7 HOH B 22 422 281 HOH HOH . N 7 HOH B 23 423 154 HOH HOH . N 7 HOH B 24 424 113 HOH HOH . N 7 HOH B 25 425 194 HOH HOH . N 7 HOH B 26 426 50 HOH HOH . N 7 HOH B 27 427 291 HOH HOH . N 7 HOH B 28 428 139 HOH HOH . N 7 HOH B 29 429 199 HOH HOH . N 7 HOH B 30 430 20 HOH HOH . N 7 HOH B 31 431 16 HOH HOH . N 7 HOH B 32 432 165 HOH HOH . N 7 HOH B 33 433 107 HOH HOH . N 7 HOH B 34 434 125 HOH HOH . N 7 HOH B 35 435 219 HOH HOH . N 7 HOH B 36 436 2 HOH HOH . N 7 HOH B 37 437 41 HOH HOH . N 7 HOH B 38 438 29 HOH HOH . N 7 HOH B 39 439 104 HOH HOH . N 7 HOH B 40 440 161 HOH HOH . N 7 HOH B 41 441 95 HOH HOH . N 7 HOH B 42 442 77 HOH HOH . N 7 HOH B 43 443 299 HOH HOH . N 7 HOH B 44 444 52 HOH HOH . N 7 HOH B 45 445 88 HOH HOH . N 7 HOH B 46 446 53 HOH HOH . N 7 HOH B 47 447 93 HOH HOH . N 7 HOH B 48 448 135 HOH HOH . N 7 HOH B 49 449 65 HOH HOH . N 7 HOH B 50 450 87 HOH HOH . N 7 HOH B 51 451 55 HOH HOH . N 7 HOH B 52 452 244 HOH HOH . N 7 HOH B 53 453 17 HOH HOH . N 7 HOH B 54 454 232 HOH HOH . N 7 HOH B 55 455 49 HOH HOH . N 7 HOH B 56 456 39 HOH HOH . N 7 HOH B 57 457 159 HOH HOH . N 7 HOH B 58 458 47 HOH HOH . N 7 HOH B 59 459 115 HOH HOH . N 7 HOH B 60 460 90 HOH HOH . N 7 HOH B 61 461 214 HOH HOH . N 7 HOH B 62 462 102 HOH HOH . N 7 HOH B 63 463 136 HOH HOH . N 7 HOH B 64 464 79 HOH HOH . N 7 HOH B 65 465 56 HOH HOH . N 7 HOH B 66 466 23 HOH HOH . N 7 HOH B 67 467 94 HOH HOH . N 7 HOH B 68 468 301 HOH HOH . N 7 HOH B 69 469 69 HOH HOH . N 7 HOH B 70 470 138 HOH HOH . N 7 HOH B 71 471 245 HOH HOH . N 7 HOH B 72 472 166 HOH HOH . N 7 HOH B 73 473 83 HOH HOH . N 7 HOH B 74 474 31 HOH HOH . N 7 HOH B 75 475 297 HOH HOH . N 7 HOH B 76 476 43 HOH HOH . N 7 HOH B 77 477 5 HOH HOH . N 7 HOH B 78 478 333 HOH HOH . N 7 HOH B 79 479 48 HOH HOH . N 7 HOH B 80 480 32 HOH HOH . N 7 HOH B 81 481 152 HOH HOH . N 7 HOH B 82 482 190 HOH HOH . N 7 HOH B 83 483 19 HOH HOH . N 7 HOH B 84 484 26 HOH HOH . N 7 HOH B 85 485 121 HOH HOH . N 7 HOH B 86 486 280 HOH HOH . N 7 HOH B 87 487 183 HOH HOH . N 7 HOH B 88 488 84 HOH HOH . N 7 HOH B 89 489 82 HOH HOH . N 7 HOH B 90 490 287 HOH HOH . N 7 HOH B 91 491 67 HOH HOH . N 7 HOH B 92 492 126 HOH HOH . N 7 HOH B 93 493 173 HOH HOH . N 7 HOH B 94 494 42 HOH HOH . N 7 HOH B 95 495 277 HOH HOH . N 7 HOH B 96 496 10 HOH HOH . N 7 HOH B 97 497 61 HOH HOH . N 7 HOH B 98 498 339 HOH HOH . N 7 HOH B 99 499 185 HOH HOH . N 7 HOH B 100 500 260 HOH HOH . N 7 HOH B 101 501 319 HOH HOH . N 7 HOH B 102 502 236 HOH HOH . N 7 HOH B 103 503 89 HOH HOH . N 7 HOH B 104 504 81 HOH HOH . N 7 HOH B 105 505 306 HOH HOH . N 7 HOH B 106 506 276 HOH HOH . N 7 HOH B 107 507 105 HOH HOH . N 7 HOH B 108 508 309 HOH HOH . N 7 HOH B 109 509 124 HOH HOH . N 7 HOH B 110 510 193 HOH HOH . N 7 HOH B 111 511 296 HOH HOH . N 7 HOH B 112 512 247 HOH HOH . N 7 HOH B 113 513 316 HOH HOH . N 7 HOH B 114 514 290 HOH HOH . N 7 HOH B 115 515 137 HOH HOH . N 7 HOH B 116 516 282 HOH HOH . N 7 HOH B 117 517 198 HOH HOH . N 7 HOH B 118 518 211 HOH HOH . N 7 HOH B 119 519 209 HOH HOH . N 7 HOH B 120 520 270 HOH HOH . N 7 HOH B 121 521 117 HOH HOH . N 7 HOH B 122 522 160 HOH HOH . N 7 HOH B 123 523 163 HOH HOH . N 7 HOH B 124 524 325 HOH HOH . N 7 HOH B 125 525 129 HOH HOH . N 7 HOH B 126 526 203 HOH HOH . N 7 HOH B 127 527 220 HOH HOH . N 7 HOH B 128 528 295 HOH HOH . N 7 HOH B 129 529 148 HOH HOH . N 7 HOH B 130 530 127 HOH HOH . N 7 HOH B 131 531 200 HOH HOH . N 7 HOH B 132 532 205 HOH HOH . N 7 HOH B 133 533 212 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 4 5.076 30.115 -28.344 1 29.81 ? C1 GOL 301 B 1 HETATM 2 O O1 GOL . . . E 4 6.435 30.508 -28.41 1 31.72 ? O1 GOL 301 B 1 HETATM 3 C C2 GOL . . . E 4 4.336 30.342 -29.644 1 34.22 ? C2 GOL 301 B 1 HETATM 4 O O2 GOL . . . E 4 4.512 31.701 -30.075 1 35.08 ? O2 GOL 301 B 1 HETATM 5 C C3 GOL . . . E 4 4.729 29.331 -30.719 1 35.34 ? C3 GOL 301 B 1 HETATM 6 O O3 GOL . . . E 4 6.042 29.557 -31.241 1 38.92 ? O3 GOL 301 B 1 HETATM 7 H H11 GOL . . . E 4 4.631 30.615 -27.641 1 30.12 ? H11 GOL 301 B 1 HETATM 8 H H12 GOL . . . E 4 5.034 29.164 -28.115 1 31.71 ? H12 GOL 301 B 1 HETATM 9 H HO1 GOL . . . E 4 6.829 30.378 -27.645 0 20 ? HO1 GOL 301 B 1 HETATM 10 H H2 GOL . . . E 4 3.375 30.213 -29.459 1 35.42 ? H2 GOL 301 B 1 HETATM 11 H HO2 GOL . . . E 4 4.865 31.654 -30.812 0 20 ? HO2 GOL 301 B 1 HETATM 12 H H31 GOL . . . E 4 4.077 29.382 -31.46 1 36.38 ? H31 GOL 301 B 1 HETATM 13 H H32 GOL . . . E 4 4.689 28.422 -30.337 1 36.82 ? H32 GOL 301 B 1 HETATM 14 H HO3 GOL . . . E 4 6.328 30.3 -30.952 1 38.16 ? HO3 GOL 301 B 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 14 #