data_8B5J
#
_model_server_result.job_id            ea4C60wsU2lWtBuwtS2ENg 
_model_server_result.datetime_utc      '2024-11-08 21:02:28' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8b5j 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":502}' 
#
_entry.id    8B5J 
#
_exptl.entry_id    8B5J 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8B5J 
_cell.length_a            71.802 
_cell.length_b            52.416 
_cell.length_c            31.983 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8B5J 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     8B5J 
_atom_sites.fract_transf_matrix[1][1]    0.013927 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.019078 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.031267 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 EDO AAA 1 501 1 EDO EDO . 
C 2 EDO AAA 1 502 2 EDO EDO . 
D 2 EDO AAA 1 503 3 EDO EDO . 
E 3 PE4 AAA 1 504 1 PE4 PE4 . 
F 4 P3R AAA 1 505 1 P3R LIG . 
G 5 HOH AAA 1 601 144 HOH HOH . 
G 5 HOH AAA 2 602 44 HOH HOH . 
G 5 HOH AAA 3 603 88 HOH HOH . 
G 5 HOH AAA 4 604 107 HOH HOH . 
G 5 HOH AAA 5 605 95 HOH HOH . 
G 5 HOH AAA 6 606 210 HOH HOH . 
G 5 HOH AAA 7 607 69 HOH HOH . 
G 5 HOH AAA 8 608 4 HOH HOH . 
G 5 HOH AAA 9 609 116 HOH HOH . 
G 5 HOH AAA 10 610 208 HOH HOH . 
G 5 HOH AAA 11 611 64 HOH HOH . 
G 5 HOH AAA 12 612 129 HOH HOH . 
G 5 HOH AAA 13 613 38 HOH HOH . 
G 5 HOH AAA 14 614 57 HOH HOH . 
G 5 HOH AAA 15 615 8 HOH HOH . 
G 5 HOH AAA 16 616 163 HOH HOH . 
G 5 HOH AAA 17 617 143 HOH HOH . 
G 5 HOH AAA 18 618 33 HOH HOH . 
G 5 HOH AAA 19 619 66 HOH HOH . 
G 5 HOH AAA 20 620 145 HOH HOH . 
G 5 HOH AAA 21 621 159 HOH HOH . 
G 5 HOH AAA 22 622 84 HOH HOH . 
G 5 HOH AAA 23 623 20 HOH HOH . 
G 5 HOH AAA 24 624 162 HOH HOH . 
G 5 HOH AAA 25 625 59 HOH HOH . 
G 5 HOH AAA 26 626 13 HOH HOH . 
G 5 HOH AAA 27 627 115 HOH HOH . 
G 5 HOH AAA 28 628 6 HOH HOH . 
G 5 HOH AAA 29 629 191 HOH HOH . 
G 5 HOH AAA 30 630 72 HOH HOH . 
G 5 HOH AAA 31 631 5 HOH HOH . 
G 5 HOH AAA 32 632 60 HOH HOH . 
G 5 HOH AAA 33 633 48 HOH HOH . 
G 5 HOH AAA 34 634 111 HOH HOH . 
G 5 HOH AAA 35 635 18 HOH HOH . 
G 5 HOH AAA 36 636 100 HOH HOH . 
G 5 HOH AAA 37 637 51 HOH HOH . 
G 5 HOH AAA 38 638 49 HOH HOH . 
G 5 HOH AAA 39 639 62 HOH HOH . 
G 5 HOH AAA 40 640 137 HOH HOH . 
G 5 HOH AAA 41 641 65 HOH HOH . 
G 5 HOH AAA 42 642 23 HOH HOH . 
G 5 HOH AAA 43 643 217 HOH HOH . 
G 5 HOH AAA 44 644 169 HOH HOH . 
G 5 HOH AAA 45 645 35 HOH HOH . 
G 5 HOH AAA 46 646 120 HOH HOH . 
G 5 HOH AAA 47 647 153 HOH HOH . 
G 5 HOH AAA 48 648 43 HOH HOH . 
G 5 HOH AAA 49 649 21 HOH HOH . 
G 5 HOH AAA 50 650 61 HOH HOH . 
G 5 HOH AAA 51 651 25 HOH HOH . 
G 5 HOH AAA 52 652 26 HOH HOH . 
G 5 HOH AAA 53 653 40 HOH HOH . 
G 5 HOH AAA 54 654 96 HOH HOH . 
G 5 HOH AAA 55 655 7 HOH HOH . 
G 5 HOH AAA 56 656 87 HOH HOH . 
G 5 HOH AAA 57 657 36 HOH HOH . 
G 5 HOH AAA 58 658 2 HOH HOH . 
G 5 HOH AAA 59 659 45 HOH HOH . 
G 5 HOH AAA 60 660 99 HOH HOH . 
G 5 HOH AAA 61 661 3 HOH HOH . 
G 5 HOH AAA 62 662 29 HOH HOH . 
G 5 HOH AAA 63 663 103 HOH HOH . 
G 5 HOH AAA 64 664 9 HOH HOH . 
G 5 HOH AAA 65 665 16 HOH HOH . 
G 5 HOH AAA 66 666 10 HOH HOH . 
G 5 HOH AAA 67 667 70 HOH HOH . 
G 5 HOH AAA 68 668 12 HOH HOH . 
G 5 HOH AAA 69 669 164 HOH HOH . 
G 5 HOH AAA 70 670 199 HOH HOH . 
G 5 HOH AAA 71 671 214 HOH HOH . 
G 5 HOH AAA 72 672 28 HOH HOH . 
G 5 HOH AAA 73 673 183 HOH HOH . 
G 5 HOH AAA 74 674 216 HOH HOH . 
G 5 HOH AAA 75 675 97 HOH HOH . 
G 5 HOH AAA 76 676 179 HOH HOH . 
G 5 HOH AAA 77 677 78 HOH HOH . 
G 5 HOH AAA 78 678 81 HOH HOH . 
G 5 HOH AAA 79 679 98 HOH HOH . 
G 5 HOH AAA 80 680 67 HOH HOH . 
G 5 HOH AAA 81 681 121 HOH HOH . 
G 5 HOH AAA 82 682 41 HOH HOH . 
G 5 HOH AAA 83 683 17 HOH HOH . 
G 5 HOH AAA 84 684 27 HOH HOH . 
G 5 HOH AAA 85 685 206 HOH HOH . 
G 5 HOH AAA 86 686 39 HOH HOH . 
G 5 HOH AAA 87 687 14 HOH HOH . 
G 5 HOH AAA 88 688 32 HOH HOH . 
G 5 HOH AAA 89 689 53 HOH HOH . 
G 5 HOH AAA 90 690 202 HOH HOH . 
G 5 HOH AAA 91 691 24 HOH HOH . 
G 5 HOH AAA 92 692 152 HOH HOH . 
G 5 HOH AAA 93 693 205 HOH HOH . 
G 5 HOH AAA 94 694 11 HOH HOH . 
G 5 HOH AAA 95 695 15 HOH HOH . 
G 5 HOH AAA 96 696 178 HOH HOH . 
G 5 HOH AAA 97 697 22 HOH HOH . 
G 5 HOH AAA 98 698 52 HOH HOH . 
G 5 HOH AAA 99 699 138 HOH HOH . 
G 5 HOH AAA 100 700 140 HOH HOH . 
G 5 HOH AAA 101 701 85 HOH HOH . 
G 5 HOH AAA 102 702 1 HOH HOH . 
G 5 HOH AAA 103 703 165 HOH HOH . 
G 5 HOH AAA 104 704 185 HOH HOH . 
G 5 HOH AAA 105 705 42 HOH HOH . 
G 5 HOH AAA 106 706 146 HOH HOH . 
G 5 HOH AAA 107 707 76 HOH HOH . 
G 5 HOH AAA 108 708 125 HOH HOH . 
G 5 HOH AAA 109 709 75 HOH HOH . 
G 5 HOH AAA 110 710 141 HOH HOH . 
G 5 HOH AAA 111 711 77 HOH HOH . 
G 5 HOH AAA 112 712 104 HOH HOH . 
G 5 HOH AAA 113 713 112 HOH HOH . 
G 5 HOH AAA 114 714 142 HOH HOH . 
G 5 HOH AAA 115 715 31 HOH HOH . 
G 5 HOH AAA 116 716 167 HOH HOH . 
G 5 HOH AAA 117 717 50 HOH HOH . 
G 5 HOH AAA 118 718 19 HOH HOH . 
G 5 HOH AAA 119 719 91 HOH HOH . 
G 5 HOH AAA 120 720 194 HOH HOH . 
G 5 HOH AAA 121 721 126 HOH HOH . 
G 5 HOH AAA 122 722 30 HOH HOH . 
G 5 HOH AAA 123 723 56 HOH HOH . 
G 5 HOH AAA 124 724 192 HOH HOH . 
G 5 HOH AAA 125 725 47 HOH HOH . 
G 5 HOH AAA 126 726 37 HOH HOH . 
G 5 HOH AAA 127 727 177 HOH HOH . 
G 5 HOH AAA 128 728 89 HOH HOH . 
G 5 HOH AAA 129 729 204 HOH HOH . 
G 5 HOH AAA 130 730 106 HOH HOH . 
G 5 HOH AAA 131 731 181 HOH HOH . 
G 5 HOH AAA 132 732 73 HOH HOH . 
G 5 HOH AAA 133 733 180 HOH HOH . 
G 5 HOH AAA 134 734 215 HOH HOH . 
G 5 HOH AAA 135 735 148 HOH HOH . 
G 5 HOH AAA 136 736 156 HOH HOH . 
G 5 HOH AAA 137 737 182 HOH HOH . 
G 5 HOH AAA 138 738 172 HOH HOH . 
G 5 HOH AAA 139 739 190 HOH HOH . 
G 5 HOH AAA 140 740 197 HOH HOH . 
G 5 HOH AAA 141 741 193 HOH HOH . 
G 5 HOH AAA 142 742 58 HOH HOH . 
G 5 HOH AAA 143 743 80 HOH HOH . 
G 5 HOH AAA 144 744 209 HOH HOH . 
G 5 HOH AAA 145 745 114 HOH HOH . 
G 5 HOH AAA 146 746 86 HOH HOH . 
G 5 HOH AAA 147 747 195 HOH HOH . 
G 5 HOH AAA 148 748 55 HOH HOH . 
G 5 HOH AAA 149 749 173 HOH HOH . 
G 5 HOH AAA 150 750 166 HOH HOH . 
G 5 HOH AAA 151 751 54 HOH HOH . 
G 5 HOH AAA 152 752 158 HOH HOH . 
G 5 HOH AAA 153 753 133 HOH HOH . 
G 5 HOH AAA 154 754 171 HOH HOH . 
G 5 HOH AAA 155 755 212 HOH HOH . 
G 5 HOH AAA 156 756 187 HOH HOH . 
G 5 HOH AAA 157 757 154 HOH HOH . 
G 5 HOH AAA 158 758 201 HOH HOH . 
G 5 HOH AAA 159 759 92 HOH HOH . 
G 5 HOH AAA 160 760 119 HOH HOH . 
G 5 HOH AAA 161 761 203 HOH HOH . 
G 5 HOH AAA 162 762 118 HOH HOH . 
G 5 HOH AAA 163 763 34 HOH HOH . 
G 5 HOH AAA 164 764 200 HOH HOH . 
G 5 HOH AAA 165 765 46 HOH HOH . 
G 5 HOH AAA 166 766 176 HOH HOH . 
G 5 HOH AAA 167 767 127 HOH HOH . 
G 5 HOH AAA 168 768 128 HOH HOH . 
G 5 HOH AAA 169 769 90 HOH HOH . 
G 5 HOH AAA 170 770 109 HOH HOH . 
G 5 HOH AAA 171 771 160 HOH HOH . 
G 5 HOH AAA 172 772 117 HOH HOH . 
G 5 HOH AAA 173 773 94 HOH HOH . 
G 5 HOH AAA 174 774 157 HOH HOH . 
G 5 HOH AAA 175 775 101 HOH HOH . 
G 5 HOH AAA 176 776 188 HOH HOH . 
G 5 HOH AAA 177 777 211 HOH HOH . 
G 5 HOH AAA 178 778 196 HOH HOH . 
G 5 HOH AAA 179 779 79 HOH HOH . 
G 5 HOH AAA 180 780 151 HOH HOH . 
G 5 HOH AAA 181 781 155 HOH HOH . 
G 5 HOH AAA 182 782 82 HOH HOH . 
G 5 HOH AAA 183 783 71 HOH HOH . 
G 5 HOH AAA 184 784 130 HOH HOH . 
G 5 HOH AAA 185 785 186 HOH HOH . 
G 5 HOH AAA 186 786 136 HOH HOH . 
G 5 HOH AAA 187 787 147 HOH HOH . 
G 5 HOH AAA 188 788 108 HOH HOH . 
G 5 HOH AAA 189 789 134 HOH HOH . 
G 5 HOH AAA 190 790 150 HOH HOH . 
G 5 HOH AAA 191 791 83 HOH HOH . 
G 5 HOH AAA 192 792 63 HOH HOH . 
G 5 HOH AAA 193 793 207 HOH HOH . 
G 5 HOH AAA 194 794 170 HOH HOH . 
G 5 HOH AAA 195 795 174 HOH HOH . 
G 5 HOH AAA 196 796 123 HOH HOH . 
G 5 HOH AAA 197 797 105 HOH HOH . 
G 5 HOH AAA 198 798 124 HOH HOH . 
G 5 HOH AAA 199 799 149 HOH HOH . 
G 5 HOH AAA 200 800 189 HOH HOH . 
G 5 HOH AAA 201 801 198 HOH HOH . 
G 5 HOH AAA 202 802 102 HOH HOH . 
G 5 HOH AAA 203 803 139 HOH HOH . 
G 5 HOH AAA 204 804 110 HOH HOH . 
G 5 HOH AAA 205 805 113 HOH HOH . 
G 5 HOH AAA 206 806 175 HOH HOH . 
G 5 HOH AAA 207 807 132 HOH HOH . 
G 5 HOH AAA 208 808 68 HOH HOH . 
G 5 HOH AAA 209 809 131 HOH HOH . 
G 5 HOH AAA 210 810 74 HOH HOH . 
G 5 HOH AAA 211 811 168 HOH HOH . 
G 5 HOH AAA 212 812 135 HOH HOH . 
G 5 HOH AAA 213 813 122 HOH HOH . 
G 5 HOH AAA 214 814 161 HOH HOH . 
G 5 HOH AAA 215 815 93 HOH HOH . 
G 5 HOH AAA 216 816 184 HOH HOH . 
G 5 HOH AAA 217 817 213 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . C 2 35.251 10.429 -14.082 1 23.74 0 C1 EDO 502 AAA 1 
HETATM 2 O O1 EDO . . . C 2 34.31 11.17 -13.324 1 24.4 0 O1 EDO 502 AAA 1 
HETATM 3 C C2 EDO . . . C 2 35.184 10.689 -15.54 1 21.2 0 C2 EDO 502 AAA 1 
HETATM 4 O O2 EDO . . . C 2 33.876 10.952 -16.009 1 19.52 0 O2 EDO 502 AAA 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           325 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           4 
#