data_8B6G # _model_server_result.job_id QPy_XgKIHMXNyQlZGg22dQ _model_server_result.datetime_utc '2024-12-21 16:21:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8b6g # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"S","auth_seq_id":1000}' # _entry.id 8B6G # _exptl.entry_id 8B6G _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 175.82 _entity.id 19 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FE2/S2 (INORGANIC) CLUSTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8B6G _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8B6G _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentadecameric _pdbx_struct_assembly.oligomeric_count 15 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 19 _struct_asym.id S _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 D NE2 HIS 86 CA HIS 86 1_555 R C8M FAD . CA FAD 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.38 ? covale ? covale2 J SG CYS 321 CE CYS 321 1_555 AA CAC HEC . CE HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.738 ? metalc ? metalc1 D O ASN 397 CA ASN 397 1_555 Q CA CA . CA CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.777 ? metalc ? metalc2 D O GLY 399 CA GLY 399 1_555 Q CA CA . CA CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.739 ? metalc ? metalc3 D O GLU 429 CA GLU 429 1_555 Q CA CA . CA CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.658 ? metalc ? metalc4 F O ILE 248 CB ILE 248 1_555 V CA CA . CB CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.521 ? metalc ? metalc5 F O ASP 250 CB ASP 250 1_555 V CA CA . CB CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.788 ? metalc ? metalc6 F OD1 ASP 253 CB ASP 253 1_555 V CA CA . CB CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? metalc ? metalc7 F OG1 THR 256 CB THR 256 1_555 V CA CA . CB CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.486 ? metalc ? metalc8 J NE2 HIS 260 CE HIS 260 1_555 AA FE HEC . CE HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.61 ? metalc ? metalc9 J NE2 HIS 317 CE HIS 317 1_555 AA FE HEC . CE HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.592 ? # _chem_comp.formula 'Fe2 S2' _chem_comp.formula_weight 175.82 _chem_comp.id FES _chem_comp.mon_nstd_flag . _chem_comp.name 'FE2/S2 (INORGANIC) CLUSTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE1 S1 FES sing 570 n n FE1 S2 FES sing 571 n n FE2 S1 FES sing 572 n n FE2 S2 FES sing 573 n n # _atom_sites.entry_id 8B6G _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code P 16 CDL CM 1 201 201 CDL CDL . Q 17 CA CA 1 701 701 CA CA . R 18 FAD CA 1 702 801 FAD FAD . S 19 FES CB 1 1000 1000 FES FES . T 20 SF4 CB 1 1001 1001 SF4 SF4 . U 21 F3S CB 1 1002 1002 F3S F3S . V 17 CA CB 1 1003 1003 CA CA . W 16 CDL CG 1 301 301 CDL CDL . X 16 CDL CG 1 302 403 CDL CDL . Y 22 3PE CK 1 101 101 3PE PEE . Z 16 CDL CK 1 102 401 CDL CDL . AA 23 HEC CE 1 401 401 HEC HEC . BA 16 CDL CJ 1 201 201 CDL CDL . CA 22 3PE CC 1 301 301 3PE PEE . DA 24 PC1 CC 1 302 201 PC1 PC1 . EA 25 UQ8 CC 1 303 101 UQ8 UQ8 . FA 16 CDL CO 1 101 202 CDL CDL . GA 16 CDL CD 1 301 301 CDL CDL . HA 22 3PE CD 1 302 402 3PE PEE . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE1 FES . . . S 19 228.003 418.338 251.552 1 118.35 ? FE1 FES 1000 CB 1 HETATM 2 FE FE2 FES . . . S 19 225.341 418.393 251.226 1 117.9 ? FE2 FES 1000 CB 1 HETATM 3 S S1 FES . . . S 19 226.874 418.083 249.684 1 129.21 ? S1 FES 1000 CB 1 HETATM 4 S S2 FES . . . S 19 226.483 418.93 253.023 1 114.3 ? S2 FES 1000 CB 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 32 _model_server_stats.create_model_time_ms 47 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #