data_8B6G # _model_server_result.job_id BJGwjTQsisoLL7EguOrtZg _model_server_result.datetime_utc '2024-12-21 16:21:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8b6g # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"AA","auth_seq_id":401}' # _entry.id 8B6G # _exptl.entry_id 8B6G _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 618.503 _entity.id 23 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEME C' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8B6G _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8B6G _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentadecameric _pdbx_struct_assembly.oligomeric_count 15 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 23 _struct_asym.id AA _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 D NE2 HIS 86 CA HIS 86 1_555 R C8M FAD . CA FAD 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.38 ? covale ? covale2 J SG CYS 321 CE CYS 321 1_555 AA CAC HEC . CE HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.738 ? metalc ? metalc1 D O ASN 397 CA ASN 397 1_555 Q CA CA . CA CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.777 ? metalc ? metalc2 D O GLY 399 CA GLY 399 1_555 Q CA CA . CA CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.739 ? metalc ? metalc3 D O GLU 429 CA GLU 429 1_555 Q CA CA . CA CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.658 ? metalc ? metalc4 F O ILE 248 CB ILE 248 1_555 V CA CA . CB CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.521 ? metalc ? metalc5 F O ASP 250 CB ASP 250 1_555 V CA CA . CB CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.788 ? metalc ? metalc6 F OD1 ASP 253 CB ASP 253 1_555 V CA CA . CB CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? metalc ? metalc7 F OG1 THR 256 CB THR 256 1_555 V CA CA . CB CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.486 ? metalc ? metalc8 J NE2 HIS 260 CE HIS 260 1_555 AA FE HEC . CE HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.61 ? metalc ? metalc9 J NE2 HIS 317 CE HIS 317 1_555 AA FE HEC . CE HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.592 ? # _chem_comp.formula 'C34 H34 Fe N4 O4' _chem_comp.formula_weight 618.503 _chem_comp.id HEC _chem_comp.mon_nstd_flag . _chem_comp.name 'HEME C' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE NA HEC sing 620 n n FE NB HEC sing 621 n n FE NC HEC sing 622 n n FE ND HEC sing 623 n n CHA C1A HEC doub 624 n n CHA C4D HEC sing 625 n n CHA HHA HEC sing 626 n n CHB C4A HEC doub 627 n n CHB C1B HEC sing 628 n n CHB HHB HEC sing 629 n n CHC C4B HEC doub 630 n n CHC C1C HEC sing 631 n n CHC HHC HEC sing 632 n n CHD C4C HEC doub 633 n n CHD C1D HEC sing 634 n n CHD HHD HEC sing 635 n n NA C1A HEC sing 636 n y NA C4A HEC sing 637 n y C1A C2A HEC sing 638 n y C2A C3A HEC doub 639 n y C2A CAA HEC sing 640 n n C3A C4A HEC sing 641 n y C3A CMA HEC sing 642 n n CMA HMA1 HEC sing 643 n n CMA HMA2 HEC sing 644 n n CMA HMA3 HEC sing 645 n n CAA CBA HEC sing 646 n n CAA HAA1 HEC sing 647 n n CAA HAA2 HEC sing 648 n n CBA CGA HEC sing 649 n n CBA HBA1 HEC sing 650 n n CBA HBA2 HEC sing 651 n n CGA O1A HEC doub 652 n n CGA O2A HEC sing 653 n n O2A H2A HEC sing 654 n n NB C1B HEC sing 655 n y NB C4B HEC sing 656 n y C1B C2B HEC doub 657 n y C2B C3B HEC sing 658 n y C2B CMB HEC sing 659 n n C3B C4B HEC sing 660 n y C3B CAB HEC doub 661 e n CMB HMB1 HEC sing 662 n n CMB HMB2 HEC sing 663 n n CMB HMB3 HEC sing 664 n n CAB CBB HEC sing 665 n n CAB HAB HEC sing 666 n n CBB HBB1 HEC sing 667 n n CBB HBB2 HEC sing 668 n n CBB HBB3 HEC sing 669 n n NC C1C HEC sing 670 n y NC C4C HEC sing 671 n y C1C C2C HEC doub 672 n y C2C C3C HEC sing 673 n y C2C CMC HEC sing 674 n n C3C C4C HEC sing 675 n y C3C CAC HEC doub 676 e n CMC HMC1 HEC sing 677 n n CMC HMC2 HEC sing 678 n n CMC HMC3 HEC sing 679 n n CAC CBC HEC sing 680 n n CAC HAC HEC sing 681 n n CBC HBC1 HEC sing 682 n n CBC HBC2 HEC sing 683 n n CBC HBC3 HEC sing 684 n n ND C1D HEC sing 685 n y ND C4D HEC sing 686 n y C1D C2D HEC doub 687 n y C2D C3D HEC sing 688 n y C2D CMD HEC sing 689 n n C3D C4D HEC doub 690 n y C3D CAD HEC sing 691 n n CMD HMD1 HEC sing 692 n n CMD HMD2 HEC sing 693 n n CMD HMD3 HEC sing 694 n n CAD CBD HEC sing 695 n n CAD HAD1 HEC sing 696 n n CAD HAD2 HEC sing 697 n n CBD CGD HEC sing 698 n n CBD HBD1 HEC sing 699 n n CBD HBD2 HEC sing 700 n n CGD O1D HEC doub 701 n n CGD O2D HEC sing 702 n n O2D H2D HEC sing 703 n n # _atom_sites.entry_id 8B6G _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code P 16 CDL CM 1 201 201 CDL CDL . Q 17 CA CA 1 701 701 CA CA . R 18 FAD CA 1 702 801 FAD FAD . S 19 FES CB 1 1000 1000 FES FES . T 20 SF4 CB 1 1001 1001 SF4 SF4 . U 21 F3S CB 1 1002 1002 F3S F3S . V 17 CA CB 1 1003 1003 CA CA . W 16 CDL CG 1 301 301 CDL CDL . X 16 CDL CG 1 302 403 CDL CDL . Y 22 3PE CK 1 101 101 3PE PEE . Z 16 CDL CK 1 102 401 CDL CDL . AA 23 HEC CE 1 401 401 HEC HEC . BA 16 CDL CJ 1 201 201 CDL CDL . CA 22 3PE CC 1 301 301 3PE PEE . DA 24 PC1 CC 1 302 201 PC1 PC1 . EA 25 UQ8 CC 1 303 101 UQ8 UQ8 . FA 16 CDL CO 1 101 202 CDL CDL . GA 16 CDL CD 1 301 301 CDL CDL . HA 22 3PE CD 1 302 402 3PE PEE . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HEC . . . AA 23 245.737 399.228 325.636 1 124.24 ? FE HEC 401 CE 1 HETATM 2 C CHA HEC . . . AA 23 242.379 399.143 326.274 1 109.6 ? CHA HEC 401 CE 1 HETATM 3 C CHB HEC . . . AA 23 246.357 398.82 329.013 1 109.07 ? CHB HEC 401 CE 1 HETATM 4 C CHC HEC . . . AA 23 249.13 399.098 325.049 1 106.36 ? CHC HEC 401 CE 1 HETATM 5 C CHD HEC . . . AA 23 245.177 399.514 322.282 1 107.55 ? CHD HEC 401 CE 1 HETATM 6 N NA HEC . . . AA 23 244.598 399.05 327.323 1 105.88 ? NA HEC 401 CE 1 HETATM 7 C C1A HEC . . . AA 23 243.22 398.987 327.35 1 104.58 ? C1A HEC 401 CE 1 HETATM 8 C C2A HEC . . . AA 23 242.804 398.715 328.708 1 107.73 ? C2A HEC 401 CE 1 HETATM 9 C C3A HEC . . . AA 23 243.894 398.631 329.466 1 105.45 ? C3A HEC 401 CE 1 HETATM 10 C C4A HEC . . . AA 23 245.044 398.834 328.611 1 109.43 ? C4A HEC 401 CE 1 HETATM 11 C CMA HEC . . . AA 23 243.931 398.354 330.983 1 100.65 ? CMA HEC 401 CE 1 HETATM 12 C CAA HEC . . . AA 23 241.343 398.571 329.185 1 112.23 ? CAA HEC 401 CE 1 HETATM 13 C CBA HEC . . . AA 23 240.642 399.914 329.039 1 111.59 ? CBA HEC 401 CE 1 HETATM 14 C CGA HEC . . . AA 23 241.477 400.969 329.708 1 111.93 ? CGA HEC 401 CE 1 HETATM 15 O O1A HEC . . . AA 23 242.095 400.655 330.755 1 115.34 ? O1A HEC 401 CE 1 HETATM 16 O O2A HEC . . . AA 23 241.514 402.12 329.206 1 111.11 ? O2A HEC 401 CE 1 HETATM 17 N NB HEC . . . AA 23 247.422 399.032 326.813 1 113.09 ? NB HEC 401 CE 1 HETATM 18 C C1B HEC . . . AA 23 247.447 398.819 328.178 1 105.62 ? C1B HEC 401 CE 1 HETATM 19 C C2B HEC . . . AA 23 248.821 398.596 328.577 1 101.1 ? C2B HEC 401 CE 1 HETATM 20 C C3B HEC . . . AA 23 249.585 398.673 327.488 1 104.2 ? C3B HEC 401 CE 1 HETATM 21 C C4B HEC . . . AA 23 248.723 398.947 326.355 1 109.62 ? C4B HEC 401 CE 1 HETATM 22 C CMB HEC . . . AA 23 249.311 398.316 330.012 1 106.82 ? CMB HEC 401 CE 1 HETATM 23 C CAB HEC . . . AA 23 251.117 398.498 327.439 1 102.38 ? CAB HEC 401 CE 1 HETATM 24 C CBB HEC . . . AA 23 251.752 399.802 326.913 1 106.02 ? CBB HEC 401 CE 1 HETATM 25 N NC HEC . . . AA 23 246.924 399.263 323.989 1 113.32 ? NC HEC 401 CE 1 HETATM 26 C C1C HEC . . . AA 23 248.303 399.258 323.962 1 109.37 ? C1C HEC 401 CE 1 HETATM 27 C C2C HEC . . . AA 23 248.728 399.31 322.579 1 112.63 ? C2C HEC 401 CE 1 HETATM 28 C C3C HEC . . . AA 23 247.644 399.564 321.84 1 110.03 ? C3C HEC 401 CE 1 HETATM 29 C C4C HEC . . . AA 23 246.485 399.45 322.695 1 106.57 ? C4C HEC 401 CE 1 HETATM 30 C CMC HEC . . . AA 23 250.193 399.509 322.136 1 106.58 ? CMC HEC 401 CE 1 HETATM 31 C CAC HEC . . . AA 23 247.592 399.782 320.313 1 106.69 ? CAC HEC 401 CE 1 HETATM 32 C CBC HEC . . . AA 23 247.046 401.197 320.026 1 99.41 ? CBC HEC 401 CE 1 HETATM 33 N ND HEC . . . AA 23 244.046 399.312 324.466 1 107.77 ? ND HEC 401 CE 1 HETATM 34 C C1D HEC . . . AA 23 244.059 399.44 323.081 1 111.61 ? C1D HEC 401 CE 1 HETATM 35 C C2D HEC . . . AA 23 242.699 399.481 322.601 1 110.03 ? C2D HEC 401 CE 1 HETATM 36 C C3D HEC . . . AA 23 241.823 399.372 323.849 1 105.54 ? C3D HEC 401 CE 1 HETATM 37 C C4D HEC . . . AA 23 242.745 399.267 324.955 1 109.06 ? C4D HEC 401 CE 1 HETATM 38 C CMD HEC . . . AA 23 242.224 399.618 321.141 1 110.42 ? CMD HEC 401 CE 1 HETATM 39 C CAD HEC . . . AA 23 240.283 399.362 323.896 1 106.98 ? CAD HEC 401 CE 1 HETATM 40 C CBD HEC . . . AA 23 239.783 400.562 324.688 1 111.35 ? CBD HEC 401 CE 1 HETATM 41 C CGD HEC . . . AA 23 238.279 400.574 324.666 1 120.19 ? CGD HEC 401 CE 1 HETATM 42 O O1D HEC . . . AA 23 237.697 401.222 323.759 1 119.71 ? O1D HEC 401 CE 1 HETATM 43 O O2D HEC . . . AA 23 237.662 399.932 325.555 1 116.45 ? O2D HEC 401 CE 1 HETATM 44 H HHA HEC . . . AA 23 241.312 399.171 326.489 1 109.6 ? HHA HEC 401 CE 1 HETATM 45 H HHB HEC . . . AA 23 246.55 398.809 330.085 1 109.07 ? HHB HEC 401 CE 1 HETATM 46 H HHC HEC . . . AA 23 250.202 399.09 324.86 1 106.36 ? HHC HEC 401 CE 1 HETATM 47 H HHD HEC . . . AA 23 245.007 399.636 321.213 1 107.55 ? HHD HEC 401 CE 1 HETATM 48 H HMA1 HEC . . . AA 23 243.381 399.139 331.5 1 100.65 ? HMA1 HEC 401 CE 1 HETATM 49 H HMA2 HEC . . . AA 23 243.47 397.387 331.178 1 100.65 ? HMA2 HEC 401 CE 1 HETATM 50 H HMA3 HEC . . . AA 23 244.968 398.345 331.317 1 100.65 ? HMA3 HEC 401 CE 1 HETATM 51 H HAA1 HEC . . . AA 23 240.828 397.812 328.598 1 112.23 ? HAA1 HEC 401 CE 1 HETATM 52 H HAA2 HEC . . . AA 23 241.316 398.243 330.223 1 112.23 ? HAA2 HEC 401 CE 1 HETATM 53 H HBA1 HEC . . . AA 23 240.503 400.154 327.986 1 111.59 ? HBA1 HEC 401 CE 1 HETATM 54 H HBA2 HEC . . . AA 23 239.652 399.874 329.49 1 111.59 ? HBA2 HEC 401 CE 1 HETATM 55 H HMB1 HEC . . . AA 23 249.042 399.157 330.649 1 106.82 ? HMB1 HEC 401 CE 1 HETATM 56 H HMB2 HEC . . . AA 23 248.836 397.407 330.378 1 106.82 ? HMB2 HEC 401 CE 1 HETATM 57 H HMB3 HEC . . . AA 23 250.393 398.191 329.999 1 106.82 ? HMB3 HEC 401 CE 1 HETATM 58 H HAB HEC . . . AA 23 251.661 397.6 327.728 1 102.38 ? HAB HEC 401 CE 1 HETATM 59 H HBB1 HEC . . . AA 23 251.368 400.005 325.914 1 106.02 ? HBB1 HEC 401 CE 1 HETATM 60 H HBB2 HEC . . . AA 23 251.492 400.619 327.584 1 106.02 ? HBB2 HEC 401 CE 1 HETATM 61 H HBB3 HEC . . . AA 23 252.834 399.681 326.878 1 106.02 ? HBB3 HEC 401 CE 1 HETATM 62 H HMC1 HEC . . . AA 23 250.554 400.46 322.523 1 106.58 ? HMC1 HEC 401 CE 1 HETATM 63 H HMC2 HEC . . . AA 23 250.797 398.694 322.531 1 106.58 ? HMC2 HEC 401 CE 1 HETATM 64 H HMC3 HEC . . . AA 23 250.237 399.51 321.048 1 106.58 ? HMC3 HEC 401 CE 1 HETATM 65 H HAC HEC . . . AA 23 247.892 399.055 319.56 1 106.69 ? HAC HEC 401 CE 1 HETATM 66 H HBC1 HEC . . . AA 23 246.046 401.283 320.448 1 99.41 ? HBC1 HEC 401 CE 1 HETATM 67 H HBC2 HEC . . . AA 23 247.707 401.932 320.484 1 99.41 ? HBC2 HEC 401 CE 1 HETATM 68 H HBC3 HEC . . . AA 23 247.009 401.351 318.949 1 99.41 ? HBC3 HEC 401 CE 1 HETATM 69 H HMD1 HEC . . . AA 23 242.602 400.554 320.732 1 110.42 ? HMD1 HEC 401 CE 1 HETATM 70 H HMD2 HEC . . . AA 23 242.608 398.778 320.563 1 110.42 ? HMD2 HEC 401 CE 1 HETATM 71 H HMD3 HEC . . . AA 23 241.135 399.616 321.121 1 110.42 ? HMD3 HEC 401 CE 1 HETATM 72 H HAD1 HEC . . . AA 23 239.879 399.389 322.885 1 106.98 ? HAD1 HEC 401 CE 1 HETATM 73 H HAD2 HEC . . . AA 23 239.93 398.44 324.355 1 106.98 ? HAD2 HEC 401 CE 1 HETATM 74 H HBD1 HEC . . . AA 23 240.143 400.511 325.714 1 111.35 ? HBD1 HEC 401 CE 1 HETATM 75 H HBD2 HEC . . . AA 23 240.172 401.484 324.259 1 111.35 ? HBD2 HEC 401 CE 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 67 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 75 #