data_8B6I # _model_server_result.job_id Pt4pHq0DBrNHXlLZCNVj1Q _model_server_result.datetime_utc '2024-10-18 16:21:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8b6i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":201}' # _entry.id 8B6I # _exptl.entry_id 8B6I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 95.63 _cell.angle_beta 95.18 _cell.angle_gamma 103.25 _cell.entry_id 8B6I _cell.length_a 33.65 _cell.length_b 39.19 _cell.length_c 65.59 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8B6I _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,K 1 1 B,G,H,I,J,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N ? 2 G N N ? 2 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 13 A CYS 12 1_555 E C PQI . A PQI 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.71 ? covale ? covale2 B SG CYS 13 B CYS 12 1_555 I C PQI . B PQI 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.671 ? metalc ? metalc1 A OG SER 18 A SER 17 1_555 C MG MG . A MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc2 A OE1 GLU 64 A GLU 63 1_555 F MG MG . A MG 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? metalc ? metalc3 A OE2 GLU 64 A GLU 63 1_555 F MG MG . A MG 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.517 ? metalc ? metalc4 A O GLY 139 A GLY 138 1_555 F MG MG . A MG 204 1_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? metalc ? metalc5 C MG MG . A MG 201 1_555 D O1B GDP . A GDP 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? metalc ? metalc6 C MG MG . A MG 201 1_555 K O HOH . A HOH 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? metalc ? metalc7 C MG MG . A MG 201 1_555 K O HOH . A HOH 325 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? metalc ? metalc8 C MG MG . A MG 201 1_555 K O HOH . A HOH 332 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? metalc ? metalc9 C MG MG . A MG 201 1_555 K O HOH . A HOH 346 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? metalc ? metalc10 F MG MG . A MG 204 1_555 K O HOH . A HOH 316 1_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? metalc ? metalc11 F MG MG . A MG 204 1_555 K O HOH . A HOH 352 1_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.65 ? metalc ? metalc12 F MG MG . A MG 204 1_555 K O HOH . A HOH 373 1_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? metalc ? metalc13 B OG SER 18 B SER 17 1_555 G MG MG . B MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? metalc ? metalc14 B OE1 GLU 64 B GLU 63 1_555 J MG MG . B MG 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.446 ? metalc ? metalc15 B OE2 GLU 64 B GLU 63 1_555 J MG MG . B MG 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.462 ? metalc ? metalc16 B O GLY 139 B GLY 138 1_555 J MG MG . B MG 204 1_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc17 G MG MG . B MG 201 1_555 H O3B GDP . B GDP 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? metalc ? metalc18 G MG MG . B MG 201 1_555 L O HOH . B HOH 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc19 G MG MG . B MG 201 1_555 L O HOH . B HOH 317 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? metalc ? metalc20 G MG MG . B MG 201 1_555 L O HOH . B HOH 327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? metalc ? metalc21 G MG MG . B MG 201 1_555 L O HOH . B HOH 328 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc22 J MG MG . B MG 204 1_555 L O HOH . B HOH 314 1_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.524 ? metalc ? metalc23 J MG MG . B MG 204 1_555 L O HOH . B HOH 347 1_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.707 ? metalc ? metalc24 J MG MG . B MG 204 1_555 L O HOH . B HOH 360 1_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.41 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8B6I _atom_sites.fract_transf_matrix[1][1] 0.029718 _atom_sites.fract_transf_matrix[1][2] 0.006998 _atom_sites.fract_transf_matrix[1][3] 0.003579 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.026215 _atom_sites.fract_transf_matrix[2][3] 0.003237 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015425 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 201 201 MG MG . D 3 GDP A 1 202 206 GDP GDP . E 4 PQI A 1 203 1 PQI INH . F 2 MG A 1 204 1 MG MG . G 2 MG B 1 201 201 MG MG . H 3 GDP B 1 202 206 GDP GDP . I 4 PQI B 1 203 2 PQI INH . J 2 MG B 1 204 2 MG MG . K 5 HOH A 1 301 124 HOH HOH . K 5 HOH A 2 302 1 HOH HOH . K 5 HOH A 3 303 81 HOH HOH . K 5 HOH A 4 304 93 HOH HOH . K 5 HOH A 5 305 129 HOH HOH . K 5 HOH A 6 306 97 HOH HOH . K 5 HOH A 7 307 24 HOH HOH . K 5 HOH A 8 308 144 HOH HOH . K 5 HOH A 9 309 74 HOH HOH . K 5 HOH A 10 310 25 HOH HOH . K 5 HOH A 11 311 120 HOH HOH . K 5 HOH A 12 312 143 HOH HOH . K 5 HOH A 13 313 99 HOH HOH . K 5 HOH A 14 314 71 HOH HOH . K 5 HOH A 15 315 16 HOH HOH . K 5 HOH A 16 316 42 HOH HOH . K 5 HOH A 17 317 121 HOH HOH . K 5 HOH A 18 318 118 HOH HOH . K 5 HOH A 19 319 12 HOH HOH . K 5 HOH A 20 320 53 HOH HOH . K 5 HOH A 21 321 3 HOH HOH . K 5 HOH A 22 322 47 HOH HOH . K 5 HOH A 23 323 138 HOH HOH . K 5 HOH A 24 324 31 HOH HOH . K 5 HOH A 25 325 7 HOH HOH . K 5 HOH A 26 326 43 HOH HOH . K 5 HOH A 27 327 10 HOH HOH . K 5 HOH A 28 328 111 HOH HOH . K 5 HOH A 29 329 92 HOH HOH . K 5 HOH A 30 330 11 HOH HOH . K 5 HOH A 31 331 116 HOH HOH . K 5 HOH A 32 332 21 HOH HOH . K 5 HOH A 33 333 20 HOH HOH . K 5 HOH A 34 334 55 HOH HOH . K 5 HOH A 35 335 22 HOH HOH . K 5 HOH A 36 336 41 HOH HOH . K 5 HOH A 37 337 133 HOH HOH . K 5 HOH A 38 338 48 HOH HOH . K 5 HOH A 39 339 94 HOH HOH . K 5 HOH A 40 340 58 HOH HOH . K 5 HOH A 41 341 70 HOH HOH . K 5 HOH A 42 342 28 HOH HOH . K 5 HOH A 43 343 39 HOH HOH . K 5 HOH A 44 344 89 HOH HOH . K 5 HOH A 45 345 45 HOH HOH . K 5 HOH A 46 346 136 HOH HOH . K 5 HOH A 47 347 103 HOH HOH . K 5 HOH A 48 348 102 HOH HOH . K 5 HOH A 49 349 54 HOH HOH . K 5 HOH A 50 350 137 HOH HOH . K 5 HOH A 51 351 40 HOH HOH . K 5 HOH A 52 352 5 HOH HOH . K 5 HOH A 53 353 17 HOH HOH . K 5 HOH A 54 354 30 HOH HOH . K 5 HOH A 55 355 109 HOH HOH . K 5 HOH A 56 356 13 HOH HOH . K 5 HOH A 57 357 76 HOH HOH . K 5 HOH A 58 358 82 HOH HOH . K 5 HOH A 59 359 101 HOH HOH . K 5 HOH A 60 360 88 HOH HOH . K 5 HOH A 61 361 123 HOH HOH . K 5 HOH A 62 362 131 HOH HOH . K 5 HOH A 63 363 34 HOH HOH . K 5 HOH A 64 364 18 HOH HOH . K 5 HOH A 65 365 36 HOH HOH . K 5 HOH A 66 366 19 HOH HOH . K 5 HOH A 67 367 44 HOH HOH . K 5 HOH A 68 368 75 HOH HOH . K 5 HOH A 69 369 127 HOH HOH . K 5 HOH A 70 370 57 HOH HOH . K 5 HOH A 71 371 29 HOH HOH . K 5 HOH A 72 372 134 HOH HOH . K 5 HOH A 73 373 63 HOH HOH . K 5 HOH A 74 374 52 HOH HOH . K 5 HOH A 75 375 132 HOH HOH . K 5 HOH A 76 376 105 HOH HOH . L 5 HOH B 1 301 104 HOH HOH . L 5 HOH B 2 302 125 HOH HOH . L 5 HOH B 3 303 100 HOH HOH . L 5 HOH B 4 304 15 HOH HOH . L 5 HOH B 5 305 126 HOH HOH . L 5 HOH B 6 306 51 HOH HOH . L 5 HOH B 7 307 83 HOH HOH . L 5 HOH B 8 308 35 HOH HOH . L 5 HOH B 9 309 98 HOH HOH . L 5 HOH B 10 310 50 HOH HOH . L 5 HOH B 11 311 87 HOH HOH . L 5 HOH B 12 312 62 HOH HOH . L 5 HOH B 13 313 106 HOH HOH . L 5 HOH B 14 314 72 HOH HOH . L 5 HOH B 15 315 67 HOH HOH . L 5 HOH B 16 316 33 HOH HOH . L 5 HOH B 17 317 38 HOH HOH . L 5 HOH B 18 318 115 HOH HOH . L 5 HOH B 19 319 9 HOH HOH . L 5 HOH B 20 320 66 HOH HOH . L 5 HOH B 21 321 117 HOH HOH . L 5 HOH B 22 322 113 HOH HOH . L 5 HOH B 23 323 140 HOH HOH . L 5 HOH B 24 324 64 HOH HOH . L 5 HOH B 25 325 60 HOH HOH . L 5 HOH B 26 326 96 HOH HOH . L 5 HOH B 27 327 86 HOH HOH . L 5 HOH B 28 328 90 HOH HOH . L 5 HOH B 29 329 56 HOH HOH . L 5 HOH B 30 330 110 HOH HOH . L 5 HOH B 31 331 78 HOH HOH . L 5 HOH B 32 332 14 HOH HOH . L 5 HOH B 33 333 128 HOH HOH . L 5 HOH B 34 334 59 HOH HOH . L 5 HOH B 35 335 8 HOH HOH . L 5 HOH B 36 336 49 HOH HOH . L 5 HOH B 37 337 141 HOH HOH . L 5 HOH B 38 338 27 HOH HOH . L 5 HOH B 39 339 23 HOH HOH . L 5 HOH B 40 340 119 HOH HOH . L 5 HOH B 41 341 6 HOH HOH . L 5 HOH B 42 342 122 HOH HOH . L 5 HOH B 43 343 61 HOH HOH . L 5 HOH B 44 344 85 HOH HOH . L 5 HOH B 45 345 112 HOH HOH . L 5 HOH B 46 346 26 HOH HOH . L 5 HOH B 47 347 80 HOH HOH . L 5 HOH B 48 348 91 HOH HOH . L 5 HOH B 49 349 32 HOH HOH . L 5 HOH B 50 350 84 HOH HOH . L 5 HOH B 51 351 46 HOH HOH . L 5 HOH B 52 352 95 HOH HOH . L 5 HOH B 53 353 73 HOH HOH . L 5 HOH B 54 354 114 HOH HOH . L 5 HOH B 55 355 68 HOH HOH . L 5 HOH B 56 356 69 HOH HOH . L 5 HOH B 57 357 107 HOH HOH . L 5 HOH B 58 358 79 HOH HOH . L 5 HOH B 59 359 108 HOH HOH . L 5 HOH B 60 360 37 HOH HOH . L 5 HOH B 61 361 130 HOH HOH . L 5 HOH B 62 362 77 HOH HOH . L 5 HOH B 63 363 139 HOH HOH . L 5 HOH B 64 364 135 HOH HOH . L 5 HOH B 65 365 142 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id G _atom_site.label_entity_id 2 _atom_site.Cartn_x 13.705 _atom_site.Cartn_y -19.753 _atom_site.Cartn_z 28.961 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 11.53 _atom_site.pdbx_formal_charge 2 _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 201 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #