data_8B6J # _model_server_result.job_id VYlOFnEXrHQsS6CnF_QTjQ _model_server_result.datetime_utc '2024-12-26 10:03:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8b6j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"DB","auth_seq_id":508}' # _entry.id 8B6J # _exptl.entry_id 8B6J _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 727.109 _entity.id 16 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Ubiquinone-8 _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8B6J _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8B6J _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 24-meric _pdbx_struct_assembly.oligomeric_count 24 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 16 JA N N ? 16 KA N N ? 16 DB N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 D SG CYS 81 D CYS 81 1_555 MA CAB HEC . D HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? covale ? covale2 D SG CYS 84 D CYS 84 1_555 MA CAC HEC . D HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? covale ? covale3 O SG CYS 81 d CYS 81 1_555 HB CAB HEC . d HEC 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.766 ? covale ? covale4 O SG CYS 84 d CYS 84 1_555 HB CAC HEC . d HEC 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.767 ? metalc ? metalc1 C NE2 HIS 84 C HIS 84 1_555 AA FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.979 ? metalc ? metalc2 C NE2 HIS 98 C HIS 98 1_555 BA FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.61 ? metalc ? metalc3 C NE2 HIS 185 C HIS 185 1_555 AA FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.598 ? metalc ? metalc4 C NE2 HIS 199 C HIS 199 1_555 BA FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? metalc ? metalc5 D NE2 HIS 85 D HIS 85 1_555 MA FE HEC . D HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? metalc ? metalc6 E SG CYS 197 E CYS 197 1_555 OA FE1 FES . E FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc7 E ND1 HIS 199 E HIS 199 1_555 OA FE2 FES . E FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? metalc ? metalc8 E SG CYS 216 E CYS 216 1_555 OA FE1 FES . E FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc9 E ND1 HIS 219 E HIS 219 1_555 OA FE2 FES . E FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? metalc ? metalc10 N NE2 HIS 84 c HIS 84 1_555 WA FE HEM . c HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.613 ? metalc ? metalc11 N NE2 HIS 98 c HIS 98 1_555 XA FE HEM . c HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.614 ? metalc ? metalc12 N NE2 HIS 185 c HIS 185 1_555 WA FE HEM . c HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? metalc ? metalc13 N NE2 HIS 199 c HIS 199 1_555 XA FE HEM . c HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? metalc ? metalc14 O NE2 HIS 85 d HIS 85 1_555 HB FE HEC . d HEC 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? metalc ? metalc15 P SG CYS 197 e CYS 197 1_555 IB FE1 FES . e FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc16 P ND1 HIS 199 e HIS 199 1_555 IB FE2 FES . e FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? metalc ? metalc17 P SG CYS 202 e CYS 202 1_555 IB FE1 FES . e FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc18 P SG CYS 216 e CYS 216 1_555 IB FE1 FES . e FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc19 P SG CYS 218 e CYS 218 1_555 IB FE2 FES . e FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? metalc ? metalc20 P SG CYS 218 e CYS 218 1_555 IB FE1 FES . e FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc21 P ND1 HIS 219 e HIS 219 1_555 IB FE2 FES . e FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? # _chem_comp.formula 'C49 H74 O4' _chem_comp.formula_weight 727.109 _chem_comp.id UQ8 _chem_comp.mon_nstd_flag . _chem_comp.name Ubiquinone-8 _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '2,3-dimethoxy-5-methyl-6-[(6E,10E,14E,18E,22E,26E)-3,7,11,15,19,23,27,31-octamethyldotriaconta-2,6,10,14,18,22,26,30-oc taen-1-yl]cyclohexa-2,5-diene-1,4-dione' # _atom_sites.entry_id 8B6J _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code Y 13 PC1 A 1 1201 1201 PC1 PC1 . Z 13 PC1 A 1 1202 501 PC1 PC1 . AA 14 HEM C 1 501 501 HEM HEM . BA 14 HEM C 1 502 601 HEM HEM . CA 15 CDL C 1 503 701 CDL CDL . DA 15 CDL C 1 504 1101 CDL CDL . EA 15 CDL C 1 505 1401 CDL CDL . FA 15 CDL C 1 506 1501 CDL CDL . GA 13 PC1 C 1 507 1601 PC1 PC1 . HA 13 PC1 C 1 508 1701 PC1 PC1 . IA 13 PC1 C 1 509 1801 PC1 PC1 . JA 16 UQ8 C 1 510 1901 UQ8 UQ8 . KA 16 UQ8 C 1 511 2001 UQ8 UQ8 . LA 17 PEE C 1 512 2002 PEE PEE . MA 18 HEC D 1 401 401 HEC HEC . NA 15 CDL D 1 402 101 CDL CDL . OA 19 FES E 1 301 301 FES FES . PA 13 PC1 E 1 302 401 PC1 PC1 . QA 13 PC1 E 1 303 1401 PC1 PC1 . RA 15 CDL E 1 304 201 CDL CDL . SA 15 CDL H 1 1301 1301 CDL CDL . TA 15 CDL H 1 1302 201 CDL CDL . UA 13 PC1 K 1 901 901 PC1 PC1 . VA 15 CDL a 1 1201 1201 CDL CDL . WA 14 HEM c 1 501 501 HEM HEM . XA 14 HEM c 1 502 601 HEM HEM . YA 15 CDL c 1 503 701 CDL CDL . ZA 13 PC1 c 1 504 901 PC1 PC1 . AB 13 PC1 c 1 505 1001 PC1 PC1 . BB 13 PC1 c 1 506 1101 PC1 PC1 . CB 15 CDL c 1 507 1301 CDL CDL . DB 16 UQ8 c 1 508 1501 UQ8 UQ8 . EB 15 CDL c 1 509 301 CDL CDL . FB 13 PC1 c 1 510 801 PC1 PC1 . GB 13 PC1 d 1 801 801 PC1 PC1 . HB 18 HEC d 1 802 401 HEC HEC . IB 19 FES e 1 301 301 FES FES . JB 15 CDL g 1 801 801 CDL CDL . KB 13 PC1 g 1 802 401 PC1 PC1 . LB 15 CDL h 1 401 401 CDL CDL . MB 15 CDL h 1 402 501 CDL CDL . NB 13 PC1 k 1 301 301 PC1 PC1 . OB 17 PEE L 1 401 401 PEE PEE . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C45 UQ8 . . . DB 16 352.25 367.318 194.623 1 61.47 ? C45 UQ8 508 c 1 HETATM 2 C C44 UQ8 . . . DB 16 351.059 367.369 193.782 1 61.47 ? C44 UQ8 508 c 1 HETATM 3 C C46 UQ8 . . . DB 16 350.619 368.699 193.373 1 61.47 ? C46 UQ8 508 c 1 HETATM 4 C C43 UQ8 . . . DB 16 350.41 366.273 193.392 1 61.47 ? C43 UQ8 508 c 1 HETATM 5 C C42 UQ8 . . . DB 16 350.834 364.884 193.742 1 61.47 ? C42 UQ8 508 c 1 HETATM 6 C C41 UQ8 . . . DB 16 349.964 363.814 193.054 1 61.47 ? C41 UQ8 508 c 1 HETATM 7 C C39 UQ8 . . . DB 16 349.675 364.077 191.595 1 61.47 ? C39 UQ8 508 c 1 HETATM 8 C C40 UQ8 . . . DB 16 348.276 364.531 191.286 1 61.47 ? C40 UQ8 508 c 1 HETATM 9 C C38 UQ8 . . . DB 16 350.605 363.892 190.667 1 61.47 ? C38 UQ8 508 c 1 HETATM 10 C C37 UQ8 . . . DB 16 352.012 363.407 190.854 1 61.47 ? C37 UQ8 508 c 1 HETATM 11 C C36 UQ8 . . . DB 16 352.761 363.328 189.514 1 61.47 ? C36 UQ8 508 c 1 HETATM 12 C C34 UQ8 . . . DB 16 353.169 364.684 188.985 1 61.47 ? C34 UQ8 508 c 1 HETATM 13 C C35 UQ8 . . . DB 16 354.099 365.462 189.872 1 61.47 ? C35 UQ8 508 c 1 HETATM 14 C C33 UQ8 . . . DB 16 352.731 365.133 187.815 1 61.47 ? C33 UQ8 508 c 1 HETATM 15 C C32 UQ8 . . . DB 16 351.81 364.45 186.847 1 61.47 ? C32 UQ8 508 c 1 HETATM 16 C C31 UQ8 . . . DB 16 351.798 365.146 185.475 1 61.47 ? C31 UQ8 508 c 1 HETATM 17 C C29 UQ8 . . . DB 16 350.594 364.764 184.648 1 61.47 ? C29 UQ8 508 c 1 HETATM 18 C C30 UQ8 . . . DB 16 349.979 365.884 183.86 1 61.47 ? C30 UQ8 508 c 1 HETATM 19 C C28 UQ8 . . . DB 16 350.14 363.517 184.635 1 61.47 ? C28 UQ8 508 c 1 HETATM 20 C C27 UQ8 . . . DB 16 348.958 362.979 183.886 1 61.47 ? C27 UQ8 508 c 1 HETATM 21 C C26 UQ8 . . . DB 16 347.638 363.466 184.506 1 61.47 ? C26 UQ8 508 c 1 HETATM 22 C C24 UQ8 . . . DB 16 346.484 362.571 184.133 1 61.47 ? C24 UQ8 508 c 1 HETATM 23 C C25 UQ8 . . . DB 16 345.805 362.904 182.835 1 61.47 ? C25 UQ8 508 c 1 HETATM 24 C C23 UQ8 . . . DB 16 346.121 361.568 184.921 1 61.47 ? C23 UQ8 508 c 1 HETATM 25 C C22 UQ8 . . . DB 16 345.014 360.584 184.703 1 61.47 ? C22 UQ8 508 c 1 HETATM 26 C C21 UQ8 . . . DB 16 345.082 359.423 185.71 1 61.47 ? C21 UQ8 508 c 1 HETATM 27 C C19 UQ8 . . . DB 16 344.413 358.193 185.206 1 61.47 ? C19 UQ8 508 c 1 HETATM 28 C C20 UQ8 . . . DB 16 343.085 357.923 185.756 1 61.47 ? C20 UQ8 508 c 1 HETATM 29 C C18 UQ8 . . . DB 16 344.982 357.424 184.272 1 61.47 ? C18 UQ8 508 c 1 HETATM 30 C C17 UQ8 . . . DB 16 344.296 356.253 183.664 1 61.47 ? C17 UQ8 508 c 1 HETATM 31 C C16 UQ8 . . . DB 16 343.406 356.733 182.507 1 61.47 ? C16 UQ8 508 c 1 HETATM 32 C C14 UQ8 . . . DB 16 342.448 355.669 182.039 1 61.47 ? C14 UQ8 508 c 1 HETATM 33 C C15 UQ8 . . . DB 16 341.121 355.649 182.741 1 61.47 ? C15 UQ8 508 c 1 HETATM 34 C C13 UQ8 . . . DB 16 342.782 354.821 181.074 1 61.47 ? C13 UQ8 508 c 1 HETATM 35 C C12 UQ8 . . . DB 16 344.073 354.744 180.314 1 61.47 ? C12 UQ8 508 c 1 HETATM 36 C C11 UQ8 . . . DB 16 343.95 355.42 178.933 1 61.47 ? C11 UQ8 508 c 1 HETATM 37 C C9 UQ8 . . . DB 16 344.907 354.768 177.976 1 61.47 ? C9 UQ8 508 c 1 HETATM 38 C C10 UQ8 . . . DB 16 346.061 355.579 177.599 1 61.47 ? C10 UQ8 508 c 1 HETATM 39 C C8 UQ8 . . . DB 16 344.637 353.527 177.553 1 61.47 ? C8 UQ8 508 c 1 HETATM 40 C C7 UQ8 . . . DB 16 343.502 352.601 177.862 1 61.47 ? C7 UQ8 508 c 1 HETATM 41 C C6 UQ8 . . . DB 16 342.697 352.027 176.719 1 61.47 ? C6 UQ8 508 c 1 HETATM 42 C C1 UQ8 . . . DB 16 341.999 350.862 176.829 1 61.47 ? C1 UQ8 508 c 1 HETATM 43 C C1M UQ8 . . . DB 16 341.911 350.06 178.094 1 61.47 ? C1M UQ8 508 c 1 HETATM 44 C C2 UQ8 . . . DB 16 341.324 350.295 175.641 1 61.47 ? C2 UQ8 508 c 1 HETATM 45 O O2 UQ8 . . . DB 16 340.66 349.267 175.732 1 61.47 ? O2 UQ8 508 c 1 HETATM 46 C C3 UQ8 . . . DB 16 341.457 350.991 174.347 1 61.47 ? C3 UQ8 508 c 1 HETATM 47 O O3 UQ8 . . . DB 16 340.857 350.394 173.278 1 61.47 ? O3 UQ8 508 c 1 HETATM 48 C C3M UQ8 . . . DB 16 341.207 349.027 172.954 1 61.47 ? C3M UQ8 508 c 1 HETATM 49 C C4 UQ8 . . . DB 16 342.121 352.161 174.262 1 61.47 ? C4 UQ8 508 c 1 HETATM 50 O O4 UQ8 . . . DB 16 342.326 352.8 173.073 1 61.47 ? O4 UQ8 508 c 1 HETATM 51 C C4M UQ8 . . . DB 16 343.582 353.477 172.827 1 61.47 ? C4M UQ8 508 c 1 HETATM 52 C C5 UQ8 . . . DB 16 342.649 352.81 175.476 1 61.47 ? C5 UQ8 508 c 1 HETATM 53 O O5 UQ8 . . . DB 16 343.009 353.983 175.452 1 61.47 ? O5 UQ8 508 c 1 # _model_server_stats.io_time_ms 32 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 114 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 53 #