data_8B71
#
_model_server_result.job_id            Qi1Rx5ewhLbXWIXG-sXlPg 
_model_server_result.datetime_utc      '2024-11-08 13:23:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8b71 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":901}' 
#
_entry.id    8B71 
#
_exptl.entry_id    8B71 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              658.412 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "(2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-2,9-bis(6-amino-9H-purin-9-yl)octahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8 ]tetraoxadiphosphacyclododecine-3,5,10,12-tetrol 5,12-dioxide" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8B71 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8B71 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C20 H24 N10 O12 P2' 
_chem_comp.formula_weight    658.412 
_chem_comp.id                2BA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "(2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-2,9-bis(6-amino-9H-purin-9-yl)octahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8 ]tetraoxadiphosphacyclododecine-3,5,10,12-tetrol 5,12-dioxide" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "bis-(3',5')-cyclic-dimeric-Adenosine-monophosphate" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1P 2BA doub 1 n n 
P O2P 2BA sing 2 n n 
P O5' 2BA sing 3 n n 
P "O3'1" 2BA sing 4 n n 
O5' C5' 2BA sing 5 n n 
C5' C4' 2BA sing 6 n n 
C4' O4' 2BA sing 7 n n 
C4' C3' 2BA sing 8 n n 
O4' C1' 2BA sing 9 n n 
C3' O3' 2BA sing 10 n n 
C3' C2' 2BA sing 11 n n 
O3' P1 2BA sing 12 n n 
C2' O2' 2BA sing 13 n n 
C2' C1' 2BA sing 14 n n 
C1' N9 2BA sing 15 n n 
N9 C8 2BA sing 16 n y 
N9 C4 2BA sing 17 n y 
C8 N7 2BA doub 18 n y 
N7 C5 2BA sing 19 n y 
C5 C6 2BA doub 20 n y 
C5 C4 2BA sing 21 n y 
C6 N6 2BA sing 22 n n 
C6 N1 2BA sing 23 n y 
N1 C2 2BA doub 24 n y 
C2 N3 2BA sing 25 n y 
N3 C4 2BA doub 26 n y 
P1 O1P1 2BA doub 27 n n 
P1 O2P1 2BA sing 28 n n 
P1 "O5'1" 2BA sing 29 n n 
"O5'1" "C5'1" 2BA sing 30 n n 
"C5'1" "C4'1" 2BA sing 31 n n 
"C4'1" "O4'1" 2BA sing 32 n n 
"C4'1" "C3'1" 2BA sing 33 n n 
"O4'1" "C1'1" 2BA sing 34 n n 
"C3'1" "O3'1" 2BA sing 35 n n 
"C3'1" "C2'1" 2BA sing 36 n n 
"C2'1" "O2'1" 2BA sing 37 n n 
"C2'1" "C1'1" 2BA sing 38 n n 
"C1'1" N91 2BA sing 39 n n 
N91 C81 2BA sing 40 n y 
N91 C41 2BA sing 41 n y 
C81 N71 2BA doub 42 n y 
N71 C51 2BA sing 43 n y 
C51 C61 2BA doub 44 n y 
C51 C41 2BA sing 45 n y 
C61 N61 2BA sing 46 n n 
C61 N11 2BA sing 47 n y 
N11 C21 2BA doub 48 n y 
C21 N31 2BA sing 49 n y 
N31 C41 2BA doub 50 n y 
C5' H5' 2BA sing 51 n n 
C5' "H5'A" 2BA sing 52 n n 
C4' H4' 2BA sing 53 n n 
C3' H3' 2BA sing 54 n n 
C2' H2' 2BA sing 55 n n 
O2' HO2' 2BA sing 56 n n 
C1' H1' 2BA sing 57 n n 
C8 H8 2BA sing 58 n n 
N6 HN6 2BA sing 59 n n 
N6 HN6A 2BA sing 60 n n 
C2 H2 2BA sing 61 n n 
"C5'1" HC5' 2BA sing 62 n n 
"C5'1" HC5A 2BA sing 63 n n 
"C4'1" HC4' 2BA sing 64 n n 
"C3'1" HC3' 2BA sing 65 n n 
"C2'1" HC2' 2BA sing 66 n n 
"O2'1" HO2A 2BA sing 67 n n 
"C1'1" HC1' 2BA sing 68 n n 
C81 HC8 2BA sing 69 n n 
N61 H1N6 2BA sing 70 n n 
N61 H1NA 2BA sing 71 n n 
C21 HC2 2BA sing 72 n n 
O2P H2P 2BA sing 73 n n 
O2P1 H2OP 2BA sing 74 n n 
#
_atom_sites.entry_id                     8B71 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 2BA A 1 1001 1001 2BA 2BA . 
D 2 2BA B 1 901 901 2BA 2BA . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P 2BA . . . D 2 100.877 98.553 137.174 1 7.66 ? P 2BA 901 B 1 
HETATM 2 O O1P 2BA . . . D 2 102.053 98.434 138.09 1 7.66 ? O1P 2BA 901 B 1 
HETATM 3 O O2P 2BA . . . D 2 99.538 97.923 137.287 1 7.66 ? O2P 2BA 901 B 1 
HETATM 4 O O5' 2BA . . . D 2 101.44 98.184 135.641 1 7.66 ? O5' 2BA 901 B 1 
HETATM 5 C C5' 2BA . . . D 2 102.612 97.504 135.473 1 7.66 ? C5' 2BA 901 B 1 
HETATM 6 C C4' 2BA . . . D 2 102.707 97.105 133.994 1 7.66 ? C4' 2BA 901 B 1 
HETATM 7 O O4' 2BA . . . D 2 102.88 95.695 133.978 1 7.66 ? O4' 2BA 901 B 1 
HETATM 8 C C3' 2BA . . . D 2 101.398 97.382 133.224 1 7.66 ? C3' 2BA 901 B 1 
HETATM 9 O O3' 2BA . . . D 2 101.446 98.572 132.585 1 7.66 ? O3' 2BA 901 B 1 
HETATM 10 C C2' 2BA . . . D 2 101.423 96.256 132.181 1 7.66 ? C2' 2BA 901 B 1 
HETATM 11 O O2' 2BA . . . D 2 102.246 96.635 131.142 1 7.66 ? O2' 2BA 901 B 1 
HETATM 12 C C1' 2BA . . . D 2 102.094 95.121 132.975 1 7.66 ? C1' 2BA 901 B 1 
HETATM 13 N N9 2BA . . . D 2 101.043 94.357 133.638 1 7.66 ? N9 2BA 901 B 1 
HETATM 14 C C8 2BA . . . D 2 100.506 94.537 134.928 1 7.66 ? C8 2BA 901 B 1 
HETATM 15 N N7 2BA . . . D 2 99.532 93.647 135.204 1 7.66 ? N7 2BA 901 B 1 
HETATM 16 C C5 2BA . . . D 2 99.44 92.872 134.042 1 7.66 ? C5 2BA 901 B 1 
HETATM 17 C C6 2BA . . . D 2 98.616 91.785 133.703 1 7.66 ? C6 2BA 901 B 1 
HETATM 18 N N6 2BA . . . D 2 97.698 91.315 134.597 1 7.66 ? N6 2BA 901 B 1 
HETATM 19 N N1 2BA . . . D 2 98.728 91.189 132.474 1 7.66 ? N1 2BA 901 B 1 
HETATM 20 C C2 2BA . . . D 2 99.673 91.72 131.633 1 7.66 ? C2 2BA 901 B 1 
HETATM 21 N N3 2BA . . . D 2 100.521 92.746 131.824 1 7.66 ? N3 2BA 901 B 1 
HETATM 22 C C4 2BA . . . D 2 100.368 93.304 133.065 1 7.66 ? C4 2BA 901 B 1 
HETATM 23 P P1 2BA . . . D 2 100.079 99.341 131.993 1 7.66 ? P1 2BA 901 B 1 
HETATM 24 O O1P1 2BA . . . D 2 100.563 100.131 130.82 1 7.66 ? O1P1 2BA 901 B 1 
HETATM 25 O O2P1 2BA . . . D 2 98.938 98.396 132.054 1 7.66 ? O2P1 2BA 901 B 1 
HETATM 26 O "O5'1" 2BA . . . D 2 99.865 100.42 133.25 1 7.66 ? "O5'1" 2BA 901 B 1 
HETATM 27 C "C5'1" 2BA . . . D 2 100.961 100.859 133.948 1 7.66 ? "C5'1" 2BA 901 B 1 
HETATM 28 C "C4'1" 2BA . . . D 2 100.456 101.636 135.165 1 7.66 ? "C4'1" 2BA 901 B 1 
HETATM 29 O "O4'1" 2BA . . . D 2 99.46 102.549 134.733 1 7.66 ? "O4'1" 2BA 901 B 1 
HETATM 30 C "C3'1" 2BA . . . D 2 99.759 100.73 136.171 1 7.66 ? "C3'1" 2BA 901 B 1 
HETATM 31 O "O3'1" 2BA . . . D 2 100.667 100.192 137.004 1 7.66 ? "O3'1" 2BA 901 B 1 
HETATM 32 C "C2'1" 2BA . . . D 2 98.921 101.771 136.899 1 7.66 ? "C2'1" 2BA 901 B 1 
HETATM 33 O "O2'1" 2BA . . . D 2 99.747 102.488 137.732 1 7.66 ? "O2'1" 2BA 901 B 1 
HETATM 34 C "C1'1" 2BA . . . D 2 98.487 102.665 135.722 1 7.66 ? "C1'1" 2BA 901 B 1 
HETATM 35 N N91 2BA . . . D 2 97.265 102.12 135.157 1 7.66 ? N91 2BA 901 B 1 
HETATM 36 C C81 2BA . . . D 2 97.099 101.438 133.941 1 7.66 ? C81 2BA 901 B 1 
HETATM 37 N N71 2BA . . . D 2 95.823 101.061 133.743 1 7.66 ? N71 2BA 901 B 1 
HETATM 38 C C51 2BA . . . D 2 95.15 101.515 134.877 1 7.66 ? C51 2BA 901 B 1 
HETATM 39 C C61 2BA . . . D 2 93.808 101.428 135.256 1 7.66 ? C61 2BA 901 B 1 
HETATM 40 N N61 2BA . . . D 2 92.909 100.81 134.444 1 7.66 ? N61 2BA 901 B 1 
HETATM 41 N N11 2BA . . . D 2 93.39 101.962 136.438 1 7.66 ? N11 2BA 901 B 1 
HETATM 42 C C21 2BA . . . D 2 94.352 102.565 137.197 1 7.66 ? C21 2BA 901 B 1 
HETATM 43 N N31 2BA . . . D 2 95.661 102.72 136.963 1 7.66 ? N31 2BA 901 B 1 
HETATM 44 C C41 2BA . . . D 2 96.027 102.169 135.765 1 7.66 ? C41 2BA 901 B 1 
#
_model_server_stats.io_time_ms              41 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           270 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           44 
#