data_8B7X # _model_server_result.job_id RyWScZo-QLfdPQfvc-dQ2g _model_server_result.datetime_utc '2024-11-26 09:46:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8b7x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 8B7X # _exptl.entry_id 8B7X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 597.822 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "O-(O-(2-AMINOPROPYL)-O'-(2-METHOXYETHYL)POLYPROPYLENE GLYCOL 500)" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 81.566 _cell.angle_beta 83.242 _cell.angle_gamma 65.06 _cell.entry_id 8B7X _cell.length_a 32.519 _cell.length_b 35.725 _cell.length_c 52.29 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8B7X _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C30 H63 N O10' _chem_comp.formula_weight 597.822 _chem_comp.id JEF _chem_comp.mon_nstd_flag . _chem_comp.name "O-(O-(2-AMINOPROPYL)-O'-(2-METHOXYETHYL)POLYPROPYLENE GLYCOL 500)" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms JEFFAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C38 O12 JEF sing 173 n n C38 H381 JEF sing 174 n n C38 H382 JEF sing 175 n n C38 H383 JEF sing 176 n n O12 C37 JEF sing 177 n n C37 C36 JEF sing 178 n n C37 H371 JEF sing 179 n n C37 H372 JEF sing 180 n n C36 O11 JEF sing 181 n n C36 H361 JEF sing 182 n n C36 H362 JEF sing 183 n n C33 C34 JEF sing 184 n n C33 C32 JEF sing 185 n n C33 H33 JEF sing 186 n n C34 H341 JEF sing 187 n n C34 H342 JEF sing 188 n n C34 H343 JEF sing 189 n n C32 O10 JEF sing 190 n n C32 H321 JEF sing 191 n n C32 H322 JEF sing 192 n n O10 C19 JEF sing 193 n n C19 C40 JEF sing 194 n n C19 C20 JEF sing 195 n n C19 H19 JEF sing 196 n n C40 H401 JEF sing 197 n n C40 H402 JEF sing 198 n n C40 H403 JEF sing 199 n n C20 O JEF sing 200 n n C20 H201 JEF sing 201 n n C20 H202 JEF sing 202 n n O C JEF sing 203 n n C C18 JEF sing 204 n n C C17 JEF sing 205 n n C H JEF sing 206 n n C18 H181 JEF sing 207 n n C18 H182 JEF sing 208 n n C18 H183 JEF sing 209 n n C17 OH JEF sing 210 n n C17 H171 JEF sing 211 n n C17 H172 JEF sing 212 n n OH C2 JEF sing 213 n n C2 C1 JEF sing 214 n n C2 C3 JEF sing 215 n n C2 H2 JEF sing 216 n n C1 H11A JEF sing 217 n n C1 H12 JEF sing 218 n n C1 H13A JEF sing 219 n n C3 O2 JEF sing 220 n n C3 H31 JEF sing 221 n n C3 H32 JEF sing 222 n n O2 C5 JEF sing 223 n n C5 C6 JEF sing 224 n n C5 C4 JEF sing 225 n n C5 H5 JEF sing 226 n n C6 H61 JEF sing 227 n n C6 H62 JEF sing 228 n n C6 H63 JEF sing 229 n n C4 O3 JEF sing 230 n n C4 H41 JEF sing 231 n n C4 H42 JEF sing 232 n n O3 C7 JEF sing 233 n n C7 C9 JEF sing 234 n n C7 C8 JEF sing 235 n n C7 H7 JEF sing 236 n n C9 H91 JEF sing 237 n n C9 H92 JEF sing 238 n n C9 H93 JEF sing 239 n n C8 O4 JEF sing 240 n n C8 H81 JEF sing 241 n n C8 H82 JEF sing 242 n n O4 C11 JEF sing 243 n n C11 C12 JEF sing 244 n n C11 C10 JEF sing 245 n n C11 H11 JEF sing 246 n n C12 H121 JEF sing 247 n n C12 H122 JEF sing 248 n n C12 H123 JEF sing 249 n n C10 O5 JEF sing 250 n n C10 H101 JEF sing 251 n n C10 H102 JEF sing 252 n n O5 C13 JEF sing 253 n n C13 C15 JEF sing 254 n n C13 C14 JEF sing 255 n n C13 H13 JEF sing 256 n n C15 H151 JEF sing 257 n n C15 H152 JEF sing 258 n n C15 H153 JEF sing 259 n n C14 O6 JEF sing 260 n n C14 H141 JEF sing 261 n n C14 H142 JEF sing 262 n n O6 C16 JEF sing 263 n n C16 C30 JEF sing 264 n n C16 H161 JEF sing 265 n n C16 H162 JEF sing 266 n n C30 C31 JEF sing 267 n n C30 N1 JEF sing 268 n n C30 H30 JEF sing 269 n n C31 H311 JEF sing 270 n n C31 H312 JEF sing 271 n n C31 H313 JEF sing 272 n n N1 HN11 JEF sing 273 n n N1 HN12 JEF sing 274 n n C33 O11 JEF sing 275 n n # _atom_sites.entry_id 8B7X _atom_sites.fract_transf_matrix[1][1] 0.030751 _atom_sites.fract_transf_matrix[1][2] -0.0143 _atom_sites.fract_transf_matrix[1][3] -0.002115 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.03087 _atom_sites.fract_transf_matrix[2][3] -0.003347 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019371 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 JEF A 1 401 401 JEF JEF . C 3 SO4 A 1 403 1 SO4 SO4 . D 4 HOH A 1 501 57 HOH HOH . D 4 HOH A 2 502 48 HOH HOH . D 4 HOH A 3 503 42 HOH HOH . D 4 HOH A 4 504 34 HOH HOH . D 4 HOH A 5 505 10 HOH HOH . D 4 HOH A 6 506 15 HOH HOH . D 4 HOH A 7 507 45 HOH HOH . D 4 HOH A 8 508 28 HOH HOH . D 4 HOH A 9 509 54 HOH HOH . D 4 HOH A 10 510 22 HOH HOH . D 4 HOH A 11 511 25 HOH HOH . D 4 HOH A 12 512 9 HOH HOH . D 4 HOH A 13 513 16 HOH HOH . D 4 HOH A 14 514 36 HOH HOH . D 4 HOH A 15 515 3 HOH HOH . D 4 HOH A 16 516 53 HOH HOH . D 4 HOH A 17 517 50 HOH HOH . D 4 HOH A 18 518 29 HOH HOH . D 4 HOH A 19 519 8 HOH HOH . D 4 HOH A 20 520 24 HOH HOH . D 4 HOH A 21 521 26 HOH HOH . D 4 HOH A 22 522 18 HOH HOH . D 4 HOH A 23 523 19 HOH HOH . D 4 HOH A 24 524 21 HOH HOH . D 4 HOH A 25 525 33 HOH HOH . D 4 HOH A 26 526 39 HOH HOH . D 4 HOH A 27 527 30 HOH HOH . D 4 HOH A 28 528 43 HOH HOH . D 4 HOH A 29 529 32 HOH HOH . D 4 HOH A 30 530 17 HOH HOH . D 4 HOH A 31 531 47 HOH HOH . D 4 HOH A 32 532 6 HOH HOH . D 4 HOH A 33 533 14 HOH HOH . D 4 HOH A 34 534 12 HOH HOH . D 4 HOH A 35 535 11 HOH HOH . D 4 HOH A 36 536 38 HOH HOH . D 4 HOH A 37 537 55 HOH HOH . D 4 HOH A 38 538 20 HOH HOH . D 4 HOH A 39 539 23 HOH HOH . D 4 HOH A 40 540 2 HOH HOH . D 4 HOH A 41 541 7 HOH HOH . D 4 HOH A 42 542 4 HOH HOH . D 4 HOH A 43 543 58 HOH HOH . D 4 HOH A 44 544 40 HOH HOH . D 4 HOH A 45 545 1 HOH HOH . D 4 HOH A 46 546 31 HOH HOH . D 4 HOH A 47 547 49 HOH HOH . D 4 HOH A 48 548 5 HOH HOH . D 4 HOH A 49 549 13 HOH HOH . D 4 HOH A 50 550 35 HOH HOH . D 4 HOH A 51 551 52 HOH HOH . D 4 HOH A 52 552 56 HOH HOH . D 4 HOH A 53 553 41 HOH HOH . D 4 HOH A 54 554 37 HOH HOH . D 4 HOH A 55 555 51 HOH HOH . D 4 HOH A 56 556 46 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C33 JEF . . . B 2 -2.357 -14.764 -14.168 1 73.11 0 C33 JEF 401 A 1 HETATM 2 C C34 JEF . . . B 2 -2.944 -15.448 -12.953 1 75.2 0 C34 JEF 401 A 1 HETATM 3 C C32 JEF . . . B 2 -2.199 -15.723 -15.361 1 57.5 0 C32 JEF 401 A 1 HETATM 4 O O10 JEF . . . B 2 -0.963 -15.407 -16.005 1 36.18 0 O10 JEF 401 A 1 HETATM 5 C C19 JEF . . . B 2 -1.092 -15.006 -17.387 1 32.66 0 C19 JEF 401 A 1 HETATM 6 C C40 JEF . . . B 2 -0.113 -13.901 -17.648 1 31.87 0 C40 JEF 401 A 1 HETATM 7 C C20 JEF . . . B 2 -0.859 -16.215 -18.278 1 48.43 0 C20 JEF 401 A 1 HETATM 8 O O JEF . . . B 2 -0.127 -15.886 -19.461 1 64.44 0 O JEF 401 A 1 HETATM 9 C C JEF . . . B 2 -0.858 -15.924 -20.711 1 62.11 0 C JEF 401 A 1 HETATM 10 C C18 JEF . . . B 2 -1.773 -17.112 -20.843 1 69.55 0 C18 JEF 401 A 1 HETATM 11 C C17 JEF . . . B 2 0.176 -15.925 -21.823 1 60.7 0 C17 JEF 401 A 1 HETATM 12 O OH JEF . . . B 2 0.981 -17.101 -21.744 1 63.91 0 OH JEF 401 A 1 HETATM 13 C C2 JEF . . . B 2 1.262 -17.729 -23.009 1 67.27 0 C2 JEF 401 A 1 HETATM 14 C C1 JEF . . . B 2 1.866 -19.087 -22.731 1 70.48 0 C1 JEF 401 A 1 HETATM 15 C C3 JEF . . . B 2 2.208 -16.868 -23.841 1 71.01 0 C3 JEF 401 A 1 HETATM 16 O O2 JEF . . . B 2 2.564 -17.605 -25.014 1 60.54 0 O2 JEF 401 A 1 HETATM 17 C C5 JEF . . . B 2 3.118 -16.794 -26.083 1 68.73 0 C5 JEF 401 A 1 HETATM 18 C C6 JEF . . . B 2 4.465 -17.31 -26.545 1 74.13 0 C6 JEF 401 A 1 HETATM 19 H H33 JEF . . . B 2 -1.452 -14.379 -13.928 1 70.65 0 H33 JEF 401 A 1 HETATM 20 H H341 JEF . . . B 2 -2.505 -15.111 -12.149 1 75.75 0 H341 JEF 401 A 1 HETATM 21 H H342 JEF . . . B 2 -2.804 -16.415 -13.016 1 73.1 0 H342 JEF 401 A 1 HETATM 22 H H343 JEF . . . B 2 -3.905 -15.26 -12.902 1 76.68 0 H343 JEF 401 A 1 HETATM 23 H H321 JEF . . . B 2 -2.966 -15.608 -15.993 1 55.33 0 H321 JEF 401 A 1 HETATM 24 H H322 JEF . . . B 2 -2.178 -16.669 -15.049 1 55.01 0 H322 JEF 401 A 1 HETATM 25 H H19 JEF . . . B 2 -2.013 -14.671 -17.544 1 34.18 0 H19 JEF 401 A 1 HETATM 26 H H401 JEF . . . B 2 0.785 -14.286 -17.781 1 32.07 0 H401 JEF 401 A 1 HETATM 27 H H402 JEF . . . B 2 -0.099 -13.289 -16.874 1 31.68 0 H402 JEF 401 A 1 HETATM 28 H H403 JEF . . . B 2 -0.386 -13.407 -18.456 1 32.54 0 H403 JEF 401 A 1 HETATM 29 H H201 JEF . . . B 2 -1.725 -16.601 -18.523 1 46.76 0 H201 JEF 401 A 1 HETATM 30 H H202 JEF . . . B 2 -0.356 -16.885 -17.775 1 48.64 0 H202 JEF 401 A 1 HETATM 31 H H JEF . . . B 2 -1.394 -15.093 -20.786 1 60.15 0 H JEF 401 A 1 HETATM 32 H H181 JEF . . . B 2 -1.83 -17.384 -21.788 1 69.22 0 H181 JEF 401 A 1 HETATM 33 H H182 JEF . . . B 2 -2.667 -16.869 -20.519 1 68.54 0 H182 JEF 401 A 1 HETATM 34 H H183 JEF . . . B 2 -1.417 -17.858 -20.311 1 67.7 0 H183 JEF 401 A 1 HETATM 35 H H171 JEF . . . B 2 0.75 -15.135 -21.735 1 60.53 0 H171 JEF 401 A 1 HETATM 36 H H172 JEF . . . B 2 -0.278 -15.887 -22.693 1 59.01 0 H172 JEF 401 A 1 HETATM 37 H H2 JEF . . . B 2 0.406 -17.84 -23.511 1 67.52 0 H2 JEF 401 A 1 HETATM 38 H H11A JEF . . . B 2 2.826 -18.975 -22.481 1 70.41 0 H11A JEF 401 A 1 HETATM 39 H H12 JEF . . . B 2 1.794 -19.656 -23.544 1 68.96 0 H12 JEF 401 A 1 HETATM 40 H H13A JEF . . . B 2 1.373 -19.513 -21.984 1 71.26 0 H13A JEF 401 A 1 HETATM 41 H H31 JEF . . . B 2 3.022 -16.654 -23.315 1 72.28 0 H31 JEF 401 A 1 HETATM 42 H H32 JEF . . . B 2 1.757 -16.025 -24.095 1 73.81 0 H32 JEF 401 A 1 HETATM 43 H H5 JEF . . . B 2 3.218 -15.857 -25.762 1 1.6 0 H5 JEF 401 A 1 HETATM 44 H H61 JEF . . . B 2 4.335 -18.037 -27.195 1 1.6 0 H61 JEF 401 A 1 HETATM 45 H H62 JEF . . . B 2 4.975 -17.648 -25.772 1 1.6 0 H62 JEF 401 A 1 HETATM 46 H H63 JEF . . . B 2 4.959 -16.578 -26.969 1 75.15 0 H63 JEF 401 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 46 #