data_8B8N
#
_model_server_result.job_id            OrpV2L-D6drhL8c-SLuAgA 
_model_server_result.datetime_utc      '2024-11-06 01:29:54' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8b8n 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":902}' 
#
_entry.id    8B8N 
#
_exptl.entry_id    8B8N 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8B8N 
_cell.length_a            57.078 
_cell.length_b            61.164 
_cell.length_c            91.13 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8B8N 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    'P 2ac 2ab' 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
? 2 D N N 
#
_struct_conn.conn_type_id                   disulf 
_struct_conn.details                        ? 
_struct_conn.id                             disulf1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            SG 
_struct_conn.ptnr1_label_comp_id            CYS 
_struct_conn.ptnr1_label_seq_id             81 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             CYS 
_struct_conn.ptnr1_auth_seq_id              616 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            A 
_struct_conn.ptnr2_label_atom_id            SG 
_struct_conn.ptnr2_label_comp_id            CYS 
_struct_conn.ptnr2_label_seq_id             83 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             CYS 
_struct_conn.ptnr2_auth_seq_id              618 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                2.037 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 193 n n 
C1 C2 GOL sing 194 n n 
C1 H11 GOL sing 195 n n 
C1 H12 GOL sing 196 n n 
O1 HO1 GOL sing 197 n n 
C2 O2 GOL sing 198 n n 
C2 C3 GOL sing 199 n n 
C2 H2 GOL sing 200 n n 
O2 HO2 GOL sing 201 n n 
C3 O3 GOL sing 202 n n 
C3 H31 GOL sing 203 n n 
C3 H32 GOL sing 204 n n 
O3 HO3 GOL sing 205 n n 
#
_atom_sites.entry_id                     8B8N 
_atom_sites.fract_transf_matrix[1][1]    0.01752 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016349 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010973 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GOL A 1 901 902 GOL GOL . 
C 2 GOL A 1 902 904 GOL GOL . 
D 2 GOL A 1 903 905 GOL GOL . 
E 3 AQG A 1 904 906 AQG LIG . 
F 4 HOH A 1 1001 75 HOH HOH . 
F 4 HOH A 2 1002 21 HOH HOH . 
F 4 HOH A 3 1003 26 HOH HOH . 
F 4 HOH A 4 1004 54 HOH HOH . 
F 4 HOH A 5 1005 5 HOH HOH . 
F 4 HOH A 6 1006 13 HOH HOH . 
F 4 HOH A 7 1007 25 HOH HOH . 
F 4 HOH A 8 1008 12 HOH HOH . 
F 4 HOH A 9 1009 36 HOH HOH . 
F 4 HOH A 10 1010 44 HOH HOH . 
F 4 HOH A 11 1011 29 HOH HOH . 
F 4 HOH A 12 1012 14 HOH HOH . 
F 4 HOH A 13 1013 83 HOH HOH . 
F 4 HOH A 14 1014 42 HOH HOH . 
F 4 HOH A 15 1015 27 HOH HOH . 
F 4 HOH A 16 1016 11 HOH HOH . 
F 4 HOH A 17 1017 22 HOH HOH . 
F 4 HOH A 18 1018 28 HOH HOH . 
F 4 HOH A 19 1019 87 HOH HOH . 
F 4 HOH A 20 1020 68 HOH HOH . 
F 4 HOH A 21 1021 2 HOH HOH . 
F 4 HOH A 22 1022 23 HOH HOH . 
F 4 HOH A 23 1023 18 HOH HOH . 
F 4 HOH A 24 1024 10 HOH HOH . 
F 4 HOH A 25 1025 31 HOH HOH . 
F 4 HOH A 26 1026 55 HOH HOH . 
F 4 HOH A 27 1027 30 HOH HOH . 
F 4 HOH A 28 1028 39 HOH HOH . 
F 4 HOH A 29 1029 74 HOH HOH . 
F 4 HOH A 30 1030 16 HOH HOH . 
F 4 HOH A 31 1031 34 HOH HOH . 
F 4 HOH A 32 1032 4 HOH HOH . 
F 4 HOH A 33 1033 77 HOH HOH . 
F 4 HOH A 34 1034 9 HOH HOH . 
F 4 HOH A 35 1035 61 HOH HOH . 
F 4 HOH A 36 1036 6 HOH HOH . 
F 4 HOH A 37 1037 57 HOH HOH . 
F 4 HOH A 38 1038 58 HOH HOH . 
F 4 HOH A 39 1039 52 HOH HOH . 
F 4 HOH A 40 1040 66 HOH HOH . 
F 4 HOH A 41 1041 24 HOH HOH . 
F 4 HOH A 42 1042 62 HOH HOH . 
F 4 HOH A 43 1043 41 HOH HOH . 
F 4 HOH A 44 1044 50 HOH HOH . 
F 4 HOH A 45 1045 20 HOH HOH . 
F 4 HOH A 46 1046 45 HOH HOH . 
F 4 HOH A 47 1047 40 HOH HOH . 
F 4 HOH A 48 1048 59 HOH HOH . 
F 4 HOH A 49 1049 64 HOH HOH . 
F 4 HOH A 50 1050 37 HOH HOH . 
F 4 HOH A 51 1051 8 HOH HOH . 
F 4 HOH A 52 1052 48 HOH HOH . 
F 4 HOH A 53 1053 85 HOH HOH . 
F 4 HOH A 54 1054 60 HOH HOH . 
F 4 HOH A 55 1055 78 HOH HOH . 
F 4 HOH A 56 1056 51 HOH HOH . 
F 4 HOH A 57 1057 49 HOH HOH . 
F 4 HOH A 58 1058 67 HOH HOH . 
F 4 HOH A 59 1059 72 HOH HOH . 
F 4 HOH A 60 1060 38 HOH HOH . 
F 4 HOH A 61 1061 65 HOH HOH . 
F 4 HOH A 62 1062 84 HOH HOH . 
F 4 HOH A 63 1063 73 HOH HOH . 
F 4 HOH A 64 1064 76 HOH HOH . 
F 4 HOH A 65 1065 7 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . C 2 4.798 7.773 6.889 1 77.45 ? C1 GOL 902 A 1 
HETATM 2 O O1 GOL . . . C 2 3.663 8.54 6.612 1 51.69 ? O1 GOL 902 A 1 
HETATM 3 C C2 GOL . . . C 2 4.512 6.995 8.195 1 68.83 ? C2 GOL 902 A 1 
HETATM 4 O O2 GOL . . . C 2 4.115 7.848 9.221 1 67.35 ? O2 GOL 902 A 1 
HETATM 5 C C3 GOL . . . C 2 3.413 5.967 7.83 1 66.55 ? C3 GOL 902 A 1 
HETATM 6 O O3 GOL . . . C 2 4.042 4.891 7.182 1 67.73 ? O3 GOL 902 A 1 
HETATM 7 H H11 GOL . . . C 2 5.595 8.314 7.005 1 93.18 ? H11 GOL 902 A 1 
HETATM 8 H H12 GOL . . . C 2 5.005 7.144 6.18 1 93.18 ? H12 GOL 902 A 1 
HETATM 9 H H2 GOL . . . C 2 5.312 6.544 8.506 1 82.84 ? H2 GOL 902 A 1 
HETATM 10 H HO2 GOL . . . C 2 3.826 8.565 8.868 1 81.07 ? HO2 GOL 902 A 1 
HETATM 11 H H31 GOL . . . C 2 2.746 6.408 7.28 1 80.11 ? H31 GOL 902 A 1 
HETATM 12 H H32 GOL . . . C 2 2.948 5.708 8.64 1 80.11 ? H32 GOL 902 A 1 
HETATM 13 H HO3 GOL . . . C 2 3.592 4.739 6.474 1 81.53 ? HO3 GOL 902 A 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           306 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           13 
#