data_8B98 # _model_server_result.job_id ofbBFkTlt4Zi_vlHEkgLVw _model_server_result.datetime_utc '2024-10-10 08:20:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8b98 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":204}' # _entry.id 8B98 # _exptl.entry_id 8B98 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8B98 _cell.length_a 44.295 _cell.length_b 48.084 _cell.length_c 58.26 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8B98 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 92 n n C1 C2 EDO sing 93 n n C1 H11 EDO sing 94 n n C1 H12 EDO sing 95 n n O1 HO1 EDO sing 96 n n C2 O2 EDO sing 97 n n C2 H21 EDO sing 98 n n C2 H22 EDO sing 99 n n O2 HO2 EDO sing 100 n n # _atom_sites.entry_id 8B98 _atom_sites.fract_transf_matrix[1][1] 0.022576 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020797 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017164 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 Q2F A 1 201 201 Q2F LIG . C 3 EDO A 1 202 301 EDO EDO . D 3 EDO A 1 203 401 EDO EDO . E 3 EDO A 1 204 501 EDO EDO . F 4 DMS A 1 205 503 DMS DMS . G 5 HOH A 1 301 68 HOH HOH . G 5 HOH A 2 302 86 HOH HOH . G 5 HOH A 3 303 87 HOH HOH . G 5 HOH A 4 304 75 HOH HOH . G 5 HOH A 5 305 98 HOH HOH . G 5 HOH A 6 306 48 HOH HOH . G 5 HOH A 7 307 79 HOH HOH . G 5 HOH A 8 308 70 HOH HOH . G 5 HOH A 9 309 64 HOH HOH . G 5 HOH A 10 310 99 HOH HOH . G 5 HOH A 11 311 43 HOH HOH . G 5 HOH A 12 312 39 HOH HOH . G 5 HOH A 13 313 5 HOH HOH . G 5 HOH A 14 314 92 HOH HOH . G 5 HOH A 15 315 100 HOH HOH . G 5 HOH A 16 316 12 HOH HOH . G 5 HOH A 17 317 23 HOH HOH . G 5 HOH A 18 318 97 HOH HOH . G 5 HOH A 19 319 56 HOH HOH . G 5 HOH A 20 320 19 HOH HOH . G 5 HOH A 21 321 27 HOH HOH . G 5 HOH A 22 322 18 HOH HOH . G 5 HOH A 23 323 78 HOH HOH . G 5 HOH A 24 324 58 HOH HOH . G 5 HOH A 25 325 2 HOH HOH . G 5 HOH A 26 326 42 HOH HOH . G 5 HOH A 27 327 59 HOH HOH . G 5 HOH A 28 328 17 HOH HOH . G 5 HOH A 29 329 55 HOH HOH . G 5 HOH A 30 330 6 HOH HOH . G 5 HOH A 31 331 37 HOH HOH . G 5 HOH A 32 332 7 HOH HOH . G 5 HOH A 33 333 65 HOH HOH . G 5 HOH A 34 334 94 HOH HOH . G 5 HOH A 35 335 4 HOH HOH . G 5 HOH A 36 336 34 HOH HOH . G 5 HOH A 37 337 51 HOH HOH . G 5 HOH A 38 338 30 HOH HOH . G 5 HOH A 39 339 66 HOH HOH . G 5 HOH A 40 340 3 HOH HOH . G 5 HOH A 41 341 25 HOH HOH . G 5 HOH A 42 342 101 HOH HOH . G 5 HOH A 43 343 57 HOH HOH . G 5 HOH A 44 344 21 HOH HOH . G 5 HOH A 45 345 63 HOH HOH . G 5 HOH A 46 346 29 HOH HOH . G 5 HOH A 47 347 26 HOH HOH . G 5 HOH A 48 348 33 HOH HOH . G 5 HOH A 49 349 15 HOH HOH . G 5 HOH A 50 350 67 HOH HOH . G 5 HOH A 51 351 50 HOH HOH . G 5 HOH A 52 352 44 HOH HOH . G 5 HOH A 53 353 45 HOH HOH . G 5 HOH A 54 354 13 HOH HOH . G 5 HOH A 55 355 102 HOH HOH . G 5 HOH A 56 356 88 HOH HOH . G 5 HOH A 57 357 104 HOH HOH . G 5 HOH A 58 358 53 HOH HOH . G 5 HOH A 59 359 10 HOH HOH . G 5 HOH A 60 360 32 HOH HOH . G 5 HOH A 61 361 81 HOH HOH . G 5 HOH A 62 362 60 HOH HOH . G 5 HOH A 63 363 90 HOH HOH . G 5 HOH A 64 364 24 HOH HOH . G 5 HOH A 65 365 28 HOH HOH . G 5 HOH A 66 366 103 HOH HOH . G 5 HOH A 67 367 82 HOH HOH . G 5 HOH A 68 368 14 HOH HOH . G 5 HOH A 69 369 35 HOH HOH . G 5 HOH A 70 370 9 HOH HOH . G 5 HOH A 71 371 38 HOH HOH . G 5 HOH A 72 372 31 HOH HOH . G 5 HOH A 73 373 69 HOH HOH . G 5 HOH A 74 374 84 HOH HOH . G 5 HOH A 75 375 62 HOH HOH . G 5 HOH A 76 376 85 HOH HOH . G 5 HOH A 77 377 72 HOH HOH . G 5 HOH A 78 378 20 HOH HOH . G 5 HOH A 79 379 83 HOH HOH . G 5 HOH A 80 380 11 HOH HOH . G 5 HOH A 81 381 47 HOH HOH . G 5 HOH A 82 382 46 HOH HOH . G 5 HOH A 83 383 105 HOH HOH . G 5 HOH A 84 384 52 HOH HOH . G 5 HOH A 85 385 16 HOH HOH . G 5 HOH A 86 386 71 HOH HOH . G 5 HOH A 87 387 96 HOH HOH . G 5 HOH A 88 388 80 HOH HOH . G 5 HOH A 89 389 93 HOH HOH . G 5 HOH A 90 390 74 HOH HOH . G 5 HOH A 91 391 95 HOH HOH . G 5 HOH A 92 392 76 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . E 3 -9.844 16.298 -15.705 1 46.77 ? C1 EDO 204 A 1 HETATM 2 O O1 EDO . . . E 3 -9.994 15.096 -16.417 1 34.53 ? O1 EDO 204 A 1 HETATM 3 C C2 EDO . . . E 3 -10.566 17.406 -16.355 1 47.74 ? C2 EDO 204 A 1 HETATM 4 O O2 EDO . . . E 3 -11.888 17.535 -15.903 1 42.46 ? O2 EDO 204 A 1 # _model_server_stats.io_time_ms 35 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 4 #