data_8B9H # _model_server_result.job_id '_s2rkyEoByH7yd1VlVCMCw' _model_server_result.datetime_utc '2024-11-22 07:39:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8b9h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":905}' # _entry.id 8B9H # _exptl.entry_id 8B9H _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 110.953 _cell.angle_gamma 90 _cell.entry_id 8B9H _cell.length_a 44.181 _cell.length_b 57.081 _cell.length_c 61.378 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8B9H _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 81 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 616 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 83 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 618 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.043 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 8B9H _atom_sites.fract_transf_matrix[1][1] 0.022634 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.008667 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017519 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017446 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 Q7F A 1 901 901 Q7F LIG . C 3 GOL A 1 902 902 GOL GOL . D 3 GOL A 1 903 903 GOL GOL . E 3 GOL A 1 904 904 GOL GOL . F 3 GOL A 1 905 905 GOL GOL . G 4 HOH A 1 1001 168 HOH HOH . G 4 HOH A 2 1002 2 HOH HOH . G 4 HOH A 3 1003 11 HOH HOH . G 4 HOH A 4 1004 189 HOH HOH . G 4 HOH A 5 1005 88 HOH HOH . G 4 HOH A 6 1006 159 HOH HOH . G 4 HOH A 7 1007 69 HOH HOH . G 4 HOH A 8 1008 177 HOH HOH . G 4 HOH A 9 1009 161 HOH HOH . G 4 HOH A 10 1010 63 HOH HOH . G 4 HOH A 11 1011 28 HOH HOH . G 4 HOH A 12 1012 184 HOH HOH . G 4 HOH A 13 1013 150 HOH HOH . G 4 HOH A 14 1014 115 HOH HOH . G 4 HOH A 15 1015 117 HOH HOH . G 4 HOH A 16 1016 39 HOH HOH . G 4 HOH A 17 1017 26 HOH HOH . G 4 HOH A 18 1018 52 HOH HOH . G 4 HOH A 19 1019 78 HOH HOH . G 4 HOH A 20 1020 171 HOH HOH . G 4 HOH A 21 1021 112 HOH HOH . G 4 HOH A 22 1022 82 HOH HOH . G 4 HOH A 23 1023 128 HOH HOH . G 4 HOH A 24 1024 75 HOH HOH . G 4 HOH A 25 1025 192 HOH HOH . G 4 HOH A 26 1026 53 HOH HOH . G 4 HOH A 27 1027 86 HOH HOH . G 4 HOH A 28 1028 1 HOH HOH . G 4 HOH A 29 1029 33 HOH HOH . G 4 HOH A 30 1030 67 HOH HOH . G 4 HOH A 31 1031 87 HOH HOH . G 4 HOH A 32 1032 38 HOH HOH . G 4 HOH A 33 1033 6 HOH HOH . G 4 HOH A 34 1034 110 HOH HOH . G 4 HOH A 35 1035 29 HOH HOH . G 4 HOH A 36 1036 109 HOH HOH . G 4 HOH A 37 1037 92 HOH HOH . G 4 HOH A 38 1038 23 HOH HOH . G 4 HOH A 39 1039 4 HOH HOH . G 4 HOH A 40 1040 113 HOH HOH . G 4 HOH A 41 1041 127 HOH HOH . G 4 HOH A 42 1042 111 HOH HOH . G 4 HOH A 43 1043 56 HOH HOH . G 4 HOH A 44 1044 47 HOH HOH . G 4 HOH A 45 1045 101 HOH HOH . G 4 HOH A 46 1046 105 HOH HOH . G 4 HOH A 47 1047 42 HOH HOH . G 4 HOH A 48 1048 10 HOH HOH . G 4 HOH A 49 1049 154 HOH HOH . G 4 HOH A 50 1050 58 HOH HOH . G 4 HOH A 51 1051 43 HOH HOH . G 4 HOH A 52 1052 44 HOH HOH . G 4 HOH A 53 1053 136 HOH HOH . G 4 HOH A 54 1054 57 HOH HOH . G 4 HOH A 55 1055 20 HOH HOH . G 4 HOH A 56 1056 89 HOH HOH . G 4 HOH A 57 1057 169 HOH HOH . G 4 HOH A 58 1058 35 HOH HOH . G 4 HOH A 59 1059 36 HOH HOH . G 4 HOH A 60 1060 41 HOH HOH . G 4 HOH A 61 1061 3 HOH HOH . G 4 HOH A 62 1062 137 HOH HOH . G 4 HOH A 63 1063 9 HOH HOH . G 4 HOH A 64 1064 73 HOH HOH . G 4 HOH A 65 1065 18 HOH HOH . G 4 HOH A 66 1066 14 HOH HOH . G 4 HOH A 67 1067 90 HOH HOH . G 4 HOH A 68 1068 22 HOH HOH . G 4 HOH A 69 1069 7 HOH HOH . G 4 HOH A 70 1070 157 HOH HOH . G 4 HOH A 71 1071 34 HOH HOH . G 4 HOH A 72 1072 74 HOH HOH . G 4 HOH A 73 1073 141 HOH HOH . G 4 HOH A 74 1074 79 HOH HOH . G 4 HOH A 75 1075 84 HOH HOH . G 4 HOH A 76 1076 46 HOH HOH . G 4 HOH A 77 1077 37 HOH HOH . G 4 HOH A 78 1078 80 HOH HOH . G 4 HOH A 79 1079 143 HOH HOH . G 4 HOH A 80 1080 55 HOH HOH . G 4 HOH A 81 1081 24 HOH HOH . G 4 HOH A 82 1082 149 HOH HOH . G 4 HOH A 83 1083 25 HOH HOH . G 4 HOH A 84 1084 17 HOH HOH . G 4 HOH A 85 1085 163 HOH HOH . G 4 HOH A 86 1086 178 HOH HOH . G 4 HOH A 87 1087 100 HOH HOH . G 4 HOH A 88 1088 175 HOH HOH . G 4 HOH A 89 1089 68 HOH HOH . G 4 HOH A 90 1090 134 HOH HOH . G 4 HOH A 91 1091 118 HOH HOH . G 4 HOH A 92 1092 129 HOH HOH . G 4 HOH A 93 1093 91 HOH HOH . G 4 HOH A 94 1094 21 HOH HOH . G 4 HOH A 95 1095 120 HOH HOH . G 4 HOH A 96 1096 16 HOH HOH . G 4 HOH A 97 1097 71 HOH HOH . G 4 HOH A 98 1098 116 HOH HOH . G 4 HOH A 99 1099 65 HOH HOH . G 4 HOH A 100 1100 77 HOH HOH . G 4 HOH A 101 1101 66 HOH HOH . G 4 HOH A 102 1102 64 HOH HOH . G 4 HOH A 103 1103 27 HOH HOH . G 4 HOH A 104 1104 12 HOH HOH . G 4 HOH A 105 1105 50 HOH HOH . G 4 HOH A 106 1106 8 HOH HOH . G 4 HOH A 107 1107 45 HOH HOH . G 4 HOH A 108 1108 131 HOH HOH . G 4 HOH A 109 1109 97 HOH HOH . G 4 HOH A 110 1110 54 HOH HOH . G 4 HOH A 111 1111 49 HOH HOH . G 4 HOH A 112 1112 188 HOH HOH . G 4 HOH A 113 1113 5 HOH HOH . G 4 HOH A 114 1114 151 HOH HOH . G 4 HOH A 115 1115 107 HOH HOH . G 4 HOH A 116 1116 62 HOH HOH . G 4 HOH A 117 1117 15 HOH HOH . G 4 HOH A 118 1118 138 HOH HOH . G 4 HOH A 119 1119 130 HOH HOH . G 4 HOH A 120 1120 61 HOH HOH . G 4 HOH A 121 1121 121 HOH HOH . G 4 HOH A 122 1122 114 HOH HOH . G 4 HOH A 123 1123 104 HOH HOH . G 4 HOH A 124 1124 95 HOH HOH . G 4 HOH A 125 1125 13 HOH HOH . G 4 HOH A 126 1126 191 HOH HOH . G 4 HOH A 127 1127 85 HOH HOH . G 4 HOH A 128 1128 152 HOH HOH . G 4 HOH A 129 1129 72 HOH HOH . G 4 HOH A 130 1130 40 HOH HOH . G 4 HOH A 131 1131 76 HOH HOH . G 4 HOH A 132 1132 99 HOH HOH . G 4 HOH A 133 1133 162 HOH HOH . G 4 HOH A 134 1134 132 HOH HOH . G 4 HOH A 135 1135 145 HOH HOH . G 4 HOH A 136 1136 19 HOH HOH . G 4 HOH A 137 1137 180 HOH HOH . G 4 HOH A 138 1138 124 HOH HOH . G 4 HOH A 139 1139 181 HOH HOH . G 4 HOH A 140 1140 190 HOH HOH . G 4 HOH A 141 1141 133 HOH HOH . G 4 HOH A 142 1142 176 HOH HOH . G 4 HOH A 143 1143 119 HOH HOH . G 4 HOH A 144 1144 185 HOH HOH . G 4 HOH A 145 1145 93 HOH HOH . G 4 HOH A 146 1146 183 HOH HOH . G 4 HOH A 147 1147 167 HOH HOH . G 4 HOH A 148 1148 83 HOH HOH . G 4 HOH A 149 1149 194 HOH HOH . G 4 HOH A 150 1150 146 HOH HOH . G 4 HOH A 151 1151 179 HOH HOH . G 4 HOH A 152 1152 48 HOH HOH . G 4 HOH A 153 1153 158 HOH HOH . G 4 HOH A 154 1154 30 HOH HOH . G 4 HOH A 155 1155 187 HOH HOH . G 4 HOH A 156 1156 135 HOH HOH . G 4 HOH A 157 1157 186 HOH HOH . G 4 HOH A 158 1158 31 HOH HOH . G 4 HOH A 159 1159 108 HOH HOH . G 4 HOH A 160 1160 70 HOH HOH . G 4 HOH A 161 1161 166 HOH HOH . G 4 HOH A 162 1162 32 HOH HOH . G 4 HOH A 163 1163 96 HOH HOH . G 4 HOH A 164 1164 144 HOH HOH . G 4 HOH A 165 1165 172 HOH HOH . G 4 HOH A 166 1166 98 HOH HOH . G 4 HOH A 167 1167 165 HOH HOH . G 4 HOH A 168 1168 140 HOH HOH . G 4 HOH A 169 1169 102 HOH HOH . G 4 HOH A 170 1170 142 HOH HOH . G 4 HOH A 171 1171 125 HOH HOH . G 4 HOH A 172 1172 103 HOH HOH . G 4 HOH A 173 1173 160 HOH HOH . G 4 HOH A 174 1174 81 HOH HOH . G 4 HOH A 175 1175 59 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 3 9.221 -21.54 3.437 1 48.17 ? C1 GOL 905 A 1 HETATM 2 O O1 GOL . . . F 3 8.089 -21.781 4.203 1 47.71 ? O1 GOL 905 A 1 HETATM 3 C C2 GOL . . . F 3 10.466 -22.084 4.149 1 50.03 ? C2 GOL 905 A 1 HETATM 4 O O2 GOL . . . F 3 11.524 -22.11 3.268 1 49.65 ? O2 GOL 905 A 1 HETATM 5 C C3 GOL . . . F 3 10.767 -21.119 5.331 1 51.8 ? C3 GOL 905 A 1 HETATM 6 O O3 GOL . . . F 3 10.708 -21.877 6.519 1 52.62 ? O3 GOL 905 A 1 HETATM 7 H H11 GOL . . . F 3 9.352 -20.593 3.272 1 57.8 ? H11 GOL 905 A 1 HETATM 8 H H12 GOL . . . F 3 9.162 -21.957 2.563 1 57.8 ? H12 GOL 905 A 1 HETATM 9 H HO1 GOL . . . F 3 7.839 -21.024 4.504 1 57.26 ? HO1 GOL 905 A 1 HETATM 10 H H2 GOL . . . F 3 10.3 -22.979 4.484 1 60.04 ? H2 GOL 905 A 1 HETATM 11 H HO2 GOL . . . F 3 11.867 -22.888 3.294 1 59.58 ? HO2 GOL 905 A 1 HETATM 12 H H31 GOL . . . F 3 10.128 -20.39 5.309 1 62.16 ? H31 GOL 905 A 1 HETATM 13 H H32 GOL . . . F 3 11.633 -20.706 5.183 1 62.16 ? H32 GOL 905 A 1 HETATM 14 H HO3 GOL . . . F 3 9.941 -21.725 6.87 1 63.14 ? HO3 GOL 905 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 246 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 14 #