data_8BAC # _model_server_result.job_id UBU2EbA7djW_Rkmv66Zv9Q _model_server_result.datetime_utc '2024-11-06 20:51:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8bac # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":602}' # _entry.id 8BAC # _exptl.entry_id 8BAC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.375 _cell.angle_gamma 90 _cell.entry_id 8BAC _cell.length_a 44.838 _cell.length_b 71.188 _cell.length_c 78.628 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8BAC _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 283 AAA CYS 437 1_555 A SG CYS 388 AAA CYS 542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? covale ? covale1 A ND2 ASN 46 AAA ASN 200 1_555 D C1 NAG . AAA NAG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.477 ? covale ? covale2 A ND2 ASN 305 AAA ASN 459 1_555 C C1 NAG . AAA NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.481 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 246 n n C1 O1 NAG sing 247 n n C1 O5 NAG sing 248 n n C1 H1 NAG sing 249 n n C2 C3 NAG sing 250 n n C2 N2 NAG sing 251 n n C2 H2 NAG sing 252 n n C3 C4 NAG sing 253 n n C3 O3 NAG sing 254 n n C3 H3 NAG sing 255 n n C4 C5 NAG sing 256 n n C4 O4 NAG sing 257 n n C4 H4 NAG sing 258 n n C5 C6 NAG sing 259 n n C5 O5 NAG sing 260 n n C5 H5 NAG sing 261 n n C6 O6 NAG sing 262 n n C6 H61 NAG sing 263 n n C6 H62 NAG sing 264 n n C7 C8 NAG sing 265 n n C7 N2 NAG sing 266 n n C7 O7 NAG doub 267 n n C8 H81 NAG sing 268 n n C8 H82 NAG sing 269 n n C8 H83 NAG sing 270 n n N2 HN2 NAG sing 271 n n O1 HO1 NAG sing 272 n n O3 HO3 NAG sing 273 n n O4 HO4 NAG sing 274 n n O6 HO6 NAG sing 275 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 8BAC _atom_sites.fract_transf_matrix[1][1] 0.022303 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003283 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014047 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012855 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAG AAA 1 601 601 NAG NAG . D 3 NAG AAA 1 602 602 NAG NAG . E 4 EDO AAA 1 603 603 EDO EDO . F 5 SJ5 AAA 1 604 604 SJ5 GIF . G 6 HOH AAA 1 701 11 HOH HOH . G 6 HOH AAA 2 702 41 HOH HOH . G 6 HOH AAA 3 703 58 HOH HOH . G 6 HOH AAA 4 704 62 HOH HOH . G 6 HOH AAA 5 705 50 HOH HOH . G 6 HOH AAA 6 706 29 HOH HOH . G 6 HOH AAA 7 707 84 HOH HOH . G 6 HOH AAA 8 708 9 HOH HOH . G 6 HOH AAA 9 709 34 HOH HOH . G 6 HOH AAA 10 710 63 HOH HOH . G 6 HOH AAA 11 711 86 HOH HOH . G 6 HOH AAA 12 712 80 HOH HOH . G 6 HOH AAA 13 713 43 HOH HOH . G 6 HOH AAA 14 714 101 HOH HOH . G 6 HOH AAA 15 715 71 HOH HOH . G 6 HOH AAA 16 716 103 HOH HOH . G 6 HOH AAA 17 717 23 HOH HOH . G 6 HOH AAA 18 718 98 HOH HOH . G 6 HOH AAA 19 719 38 HOH HOH . G 6 HOH AAA 20 720 67 HOH HOH . G 6 HOH AAA 21 721 49 HOH HOH . G 6 HOH AAA 22 722 82 HOH HOH . G 6 HOH AAA 23 723 21 HOH HOH . G 6 HOH AAA 24 724 16 HOH HOH . G 6 HOH AAA 25 725 88 HOH HOH . G 6 HOH AAA 26 726 60 HOH HOH . G 6 HOH AAA 27 727 72 HOH HOH . G 6 HOH AAA 28 728 78 HOH HOH . G 6 HOH AAA 29 729 33 HOH HOH . G 6 HOH AAA 30 730 73 HOH HOH . G 6 HOH AAA 31 731 20 HOH HOH . G 6 HOH AAA 32 732 8 HOH HOH . G 6 HOH AAA 33 733 24 HOH HOH . G 6 HOH AAA 34 734 65 HOH HOH . G 6 HOH AAA 35 735 85 HOH HOH . G 6 HOH AAA 36 736 3 HOH HOH . G 6 HOH AAA 37 737 100 HOH HOH . G 6 HOH AAA 38 738 45 HOH HOH . G 6 HOH AAA 39 739 91 HOH HOH . G 6 HOH AAA 40 740 7 HOH HOH . G 6 HOH AAA 41 741 51 HOH HOH . G 6 HOH AAA 42 742 61 HOH HOH . G 6 HOH AAA 43 743 37 HOH HOH . G 6 HOH AAA 44 744 57 HOH HOH . G 6 HOH AAA 45 745 89 HOH HOH . G 6 HOH AAA 46 746 15 HOH HOH . G 6 HOH AAA 47 747 79 HOH HOH . G 6 HOH AAA 48 748 46 HOH HOH . G 6 HOH AAA 49 749 4 HOH HOH . G 6 HOH AAA 50 750 6 HOH HOH . G 6 HOH AAA 51 751 55 HOH HOH . G 6 HOH AAA 52 752 19 HOH HOH . G 6 HOH AAA 53 753 22 HOH HOH . G 6 HOH AAA 54 754 66 HOH HOH . G 6 HOH AAA 55 755 5 HOH HOH . G 6 HOH AAA 56 756 25 HOH HOH . G 6 HOH AAA 57 757 90 HOH HOH . G 6 HOH AAA 58 758 56 HOH HOH . G 6 HOH AAA 59 759 81 HOH HOH . G 6 HOH AAA 60 760 54 HOH HOH . G 6 HOH AAA 61 761 44 HOH HOH . G 6 HOH AAA 62 762 52 HOH HOH . G 6 HOH AAA 63 763 27 HOH HOH . G 6 HOH AAA 64 764 18 HOH HOH . G 6 HOH AAA 65 765 64 HOH HOH . G 6 HOH AAA 66 766 53 HOH HOH . G 6 HOH AAA 67 767 48 HOH HOH . G 6 HOH AAA 68 768 69 HOH HOH . G 6 HOH AAA 69 769 39 HOH HOH . G 6 HOH AAA 70 770 68 HOH HOH . G 6 HOH AAA 71 771 1 HOH HOH . G 6 HOH AAA 72 772 2 HOH HOH . G 6 HOH AAA 73 773 96 HOH HOH . G 6 HOH AAA 74 774 99 HOH HOH . G 6 HOH AAA 75 775 17 HOH HOH . G 6 HOH AAA 76 776 26 HOH HOH . G 6 HOH AAA 77 777 95 HOH HOH . G 6 HOH AAA 78 778 77 HOH HOH . G 6 HOH AAA 79 779 32 HOH HOH . G 6 HOH AAA 80 780 94 HOH HOH . G 6 HOH AAA 81 781 75 HOH HOH . H 6 HOH BBB 1 101 102 HOH HOH . H 6 HOH BBB 2 102 36 HOH HOH . H 6 HOH BBB 3 103 93 HOH HOH . H 6 HOH BBB 4 104 83 HOH HOH . H 6 HOH BBB 5 105 87 HOH HOH . H 6 HOH BBB 6 106 31 HOH HOH . H 6 HOH BBB 7 107 35 HOH HOH . H 6 HOH BBB 8 108 74 HOH HOH . H 6 HOH BBB 9 109 40 HOH HOH . H 6 HOH BBB 10 110 92 HOH HOH . H 6 HOH BBB 11 111 12 HOH HOH . H 6 HOH BBB 12 112 76 HOH HOH . H 6 HOH BBB 13 113 70 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . D 3 -17.5 8.274 -7.247 1 85.41 ? C1 NAG 602 AAA 1 HETATM 2 C C2 NAG . . . D 3 -18.513 7.778 -8.314 1 89.28 ? C2 NAG 602 AAA 1 HETATM 3 C C3 NAG . . . D 3 -18.287 8.477 -9.679 1 87.11 ? C3 NAG 602 AAA 1 HETATM 4 C C4 NAG . . . D 3 -18.234 9.988 -9.537 1 88.7 ? C4 NAG 602 AAA 1 HETATM 5 C C5 NAG . . . D 3 -17.11 10.281 -8.561 1 87.55 ? C5 NAG 602 AAA 1 HETATM 6 C C6 NAG . . . D 3 -16.921 11.77 -8.367 1 91.06 ? C6 NAG 602 AAA 1 HETATM 7 C C7 NAG . . . D 3 -19.301 5.396 -8.085 1 87.6 ? C7 NAG 602 AAA 1 HETATM 8 C C8 NAG . . . D 3 -19.086 4.007 -8.614 1 86.11 ? C8 NAG 602 AAA 1 HETATM 9 N N2 NAG . . . D 3 -18.432 6.326 -8.533 1 92.41 ? N2 NAG 602 AAA 1 HETATM 10 O O3 NAG . . . D 3 -19.316 8.174 -10.626 1 88.25 ? O3 NAG 602 AAA 1 HETATM 11 O O4 NAG . . . D 3 -18.047 10.648 -10.804 1 84.01 ? O4 NAG 602 AAA 1 HETATM 12 O O5 NAG . . . D 3 -17.436 9.711 -7.293 1 84.37 ? O5 NAG 602 AAA 1 HETATM 13 O O6 NAG . . . D 3 -15.969 11.947 -7.318 1 92.56 ? O6 NAG 602 AAA 1 HETATM 14 O O7 NAG . . . D 3 -20.236 5.62 -7.333 1 90.39 ? O7 NAG 602 AAA 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 243 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 14 #