data_8BAC # _model_server_result.job_id ofnW7dh8gs1PWGqURA_rHA _model_server_result.datetime_utc '2024-11-24 14:10:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8bac # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":604}' # _entry.id 8BAC # _exptl.entry_id 8BAC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 161.156 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(3S,4R,5R)-4,5-dihydroxypiperidine-3-carboxylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.375 _cell.angle_gamma 90 _cell.entry_id 8BAC _cell.length_a 44.838 _cell.length_b 71.188 _cell.length_c 78.628 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8BAC _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 283 AAA CYS 437 1_555 A SG CYS 388 AAA CYS 542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? covale ? covale1 A ND2 ASN 46 AAA ASN 200 1_555 D C1 NAG . AAA NAG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.477 ? covale ? covale2 A ND2 ASN 305 AAA ASN 459 1_555 C C1 NAG . AAA NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.481 ? # _chem_comp.formula 'C6 H11 N O4' _chem_comp.formula_weight 161.156 _chem_comp.id SJ5 _chem_comp.mon_nstd_flag . _chem_comp.name '(3S,4R,5R)-4,5-dihydroxypiperidine-3-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O61 C6 SJ5 doub 329 n n O4 C4 SJ5 sing 330 n n O62 C6 SJ5 sing 331 n n C6 C5 SJ5 sing 332 n n C4 C5 SJ5 sing 333 n n C4 C3 SJ5 sing 334 n n O3 C3 SJ5 sing 335 n n C5 C7 SJ5 sing 336 n n C7 N SJ5 sing 337 n n C3 C2 SJ5 sing 338 n n C2 N SJ5 sing 339 n n C2 H1 SJ5 sing 340 n n C2 H2 SJ5 sing 341 n n C3 H3 SJ5 sing 342 n n O3 H4 SJ5 sing 343 n n N H5 SJ5 sing 344 n n C7 H7 SJ5 sing 345 n n C7 H8 SJ5 sing 346 n n C5 H9 SJ5 sing 347 n n O62 H10 SJ5 sing 348 n n C4 H11 SJ5 sing 349 n n O4 H12 SJ5 sing 350 n n # _atom_sites.entry_id 8BAC _atom_sites.fract_transf_matrix[1][1] 0.022303 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003283 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014047 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012855 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAG AAA 1 601 601 NAG NAG . D 3 NAG AAA 1 602 602 NAG NAG . E 4 EDO AAA 1 603 603 EDO EDO . F 5 SJ5 AAA 1 604 604 SJ5 GIF . G 6 HOH AAA 1 701 11 HOH HOH . G 6 HOH AAA 2 702 41 HOH HOH . G 6 HOH AAA 3 703 58 HOH HOH . G 6 HOH AAA 4 704 62 HOH HOH . G 6 HOH AAA 5 705 50 HOH HOH . G 6 HOH AAA 6 706 29 HOH HOH . G 6 HOH AAA 7 707 84 HOH HOH . G 6 HOH AAA 8 708 9 HOH HOH . G 6 HOH AAA 9 709 34 HOH HOH . G 6 HOH AAA 10 710 63 HOH HOH . G 6 HOH AAA 11 711 86 HOH HOH . G 6 HOH AAA 12 712 80 HOH HOH . G 6 HOH AAA 13 713 43 HOH HOH . G 6 HOH AAA 14 714 101 HOH HOH . G 6 HOH AAA 15 715 71 HOH HOH . G 6 HOH AAA 16 716 103 HOH HOH . G 6 HOH AAA 17 717 23 HOH HOH . G 6 HOH AAA 18 718 98 HOH HOH . G 6 HOH AAA 19 719 38 HOH HOH . G 6 HOH AAA 20 720 67 HOH HOH . G 6 HOH AAA 21 721 49 HOH HOH . G 6 HOH AAA 22 722 82 HOH HOH . G 6 HOH AAA 23 723 21 HOH HOH . G 6 HOH AAA 24 724 16 HOH HOH . G 6 HOH AAA 25 725 88 HOH HOH . G 6 HOH AAA 26 726 60 HOH HOH . G 6 HOH AAA 27 727 72 HOH HOH . G 6 HOH AAA 28 728 78 HOH HOH . G 6 HOH AAA 29 729 33 HOH HOH . G 6 HOH AAA 30 730 73 HOH HOH . G 6 HOH AAA 31 731 20 HOH HOH . G 6 HOH AAA 32 732 8 HOH HOH . G 6 HOH AAA 33 733 24 HOH HOH . G 6 HOH AAA 34 734 65 HOH HOH . G 6 HOH AAA 35 735 85 HOH HOH . G 6 HOH AAA 36 736 3 HOH HOH . G 6 HOH AAA 37 737 100 HOH HOH . G 6 HOH AAA 38 738 45 HOH HOH . G 6 HOH AAA 39 739 91 HOH HOH . G 6 HOH AAA 40 740 7 HOH HOH . G 6 HOH AAA 41 741 51 HOH HOH . G 6 HOH AAA 42 742 61 HOH HOH . G 6 HOH AAA 43 743 37 HOH HOH . G 6 HOH AAA 44 744 57 HOH HOH . G 6 HOH AAA 45 745 89 HOH HOH . G 6 HOH AAA 46 746 15 HOH HOH . G 6 HOH AAA 47 747 79 HOH HOH . G 6 HOH AAA 48 748 46 HOH HOH . G 6 HOH AAA 49 749 4 HOH HOH . G 6 HOH AAA 50 750 6 HOH HOH . G 6 HOH AAA 51 751 55 HOH HOH . G 6 HOH AAA 52 752 19 HOH HOH . G 6 HOH AAA 53 753 22 HOH HOH . G 6 HOH AAA 54 754 66 HOH HOH . G 6 HOH AAA 55 755 5 HOH HOH . G 6 HOH AAA 56 756 25 HOH HOH . G 6 HOH AAA 57 757 90 HOH HOH . G 6 HOH AAA 58 758 56 HOH HOH . G 6 HOH AAA 59 759 81 HOH HOH . G 6 HOH AAA 60 760 54 HOH HOH . G 6 HOH AAA 61 761 44 HOH HOH . G 6 HOH AAA 62 762 52 HOH HOH . G 6 HOH AAA 63 763 27 HOH HOH . G 6 HOH AAA 64 764 18 HOH HOH . G 6 HOH AAA 65 765 64 HOH HOH . G 6 HOH AAA 66 766 53 HOH HOH . G 6 HOH AAA 67 767 48 HOH HOH . G 6 HOH AAA 68 768 69 HOH HOH . G 6 HOH AAA 69 769 39 HOH HOH . G 6 HOH AAA 70 770 68 HOH HOH . G 6 HOH AAA 71 771 1 HOH HOH . G 6 HOH AAA 72 772 2 HOH HOH . G 6 HOH AAA 73 773 96 HOH HOH . G 6 HOH AAA 74 774 99 HOH HOH . G 6 HOH AAA 75 775 17 HOH HOH . G 6 HOH AAA 76 776 26 HOH HOH . G 6 HOH AAA 77 777 95 HOH HOH . G 6 HOH AAA 78 778 77 HOH HOH . G 6 HOH AAA 79 779 32 HOH HOH . G 6 HOH AAA 80 780 94 HOH HOH . G 6 HOH AAA 81 781 75 HOH HOH . H 6 HOH BBB 1 101 102 HOH HOH . H 6 HOH BBB 2 102 36 HOH HOH . H 6 HOH BBB 3 103 93 HOH HOH . H 6 HOH BBB 4 104 83 HOH HOH . H 6 HOH BBB 5 105 87 HOH HOH . H 6 HOH BBB 6 106 31 HOH HOH . H 6 HOH BBB 7 107 35 HOH HOH . H 6 HOH BBB 8 108 74 HOH HOH . H 6 HOH BBB 9 109 40 HOH HOH . H 6 HOH BBB 10 110 92 HOH HOH . H 6 HOH BBB 11 111 12 HOH HOH . H 6 HOH BBB 12 112 76 HOH HOH . H 6 HOH BBB 13 113 70 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 SJ5 . . . F 5 -15.095 16.011 17.1 1 43.22 ? C2 SJ5 604 AAA 1 HETATM 2 C C3 SJ5 . . . F 5 -14.422 17.376 17.095 1 42.57 ? C3 SJ5 604 AAA 1 HETATM 3 O O3 SJ5 . . . F 5 -14.523 17.956 15.8 1 44.31 ? O3 SJ5 604 AAA 1 HETATM 4 N N SJ5 . . . F 5 -15.15 15.433 18.452 1 38.95 ? N SJ5 604 AAA 1 HETATM 5 C C7 SJ5 . . . F 5 -15.813 16.317 19.418 1 41.13 ? C7 SJ5 604 AAA 1 HETATM 6 C C5 SJ5 . . . F 5 -15.1 17.663 19.506 1 40.86 ? C5 SJ5 604 AAA 1 HETATM 7 C C6 SJ5 . . . F 5 -15.717 18.612 20.529 1 40.34 ? C6 SJ5 604 AAA 1 HETATM 8 O O62 SJ5 . . . F 5 -14.98 19.427 21.095 1 36.94 ? O62 SJ5 604 AAA 1 HETATM 9 C C4 SJ5 . . . F 5 -15.068 18.309 18.114 1 41.96 ? C4 SJ5 604 AAA 1 HETATM 10 O O4 SJ5 . . . F 5 -14.321 19.528 18.192 1 39.84 ? O4 SJ5 604 AAA 1 HETATM 11 O O61 SJ5 . . . F 5 -16.92 18.536 20.715 1 41.71 ? O61 SJ5 604 AAA 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 11 #