data_8BAK # _model_server_result.job_id XGW9x-sc4jr334MPHE7CyA _model_server_result.datetime_utc '2024-11-08 06:41:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8bak # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":904}' # _entry.id 8BAK # _exptl.entry_id 8BAK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8BAK _cell.length_a 53.282 _cell.length_b 56.966 _cell.length_c 114.365 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8BAK _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 81 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 616 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 83 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 618 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.019 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 189 n n C1 C2 GOL sing 190 n n C1 H11 GOL sing 191 n n C1 H12 GOL sing 192 n n O1 HO1 GOL sing 193 n n C2 O2 GOL sing 194 n n C2 C3 GOL sing 195 n n C2 H2 GOL sing 196 n n O2 HO2 GOL sing 197 n n C3 O3 GOL sing 198 n n C3 H31 GOL sing 199 n n C3 H32 GOL sing 200 n n O3 HO3 GOL sing 201 n n # _atom_sites.entry_id 8BAK _atom_sites.fract_transf_matrix[1][1] 0.018768 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017554 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008744 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 901 902 GOL GOL . C 2 GOL A 1 902 903 GOL GOL . D 2 GOL A 1 903 904 GOL GOL . E 2 GOL A 1 904 906 GOL GOL . F 2 GOL A 1 905 907 GOL GOL . G 3 AD5 A 1 906 908 AD5 LIG . H 4 HOH A 1 1001 139 HOH HOH . H 4 HOH A 2 1002 93 HOH HOH . H 4 HOH A 3 1003 186 HOH HOH . H 4 HOH A 4 1004 136 HOH HOH . H 4 HOH A 5 1005 157 HOH HOH . H 4 HOH A 6 1006 205 HOH HOH . H 4 HOH A 7 1007 168 HOH HOH . H 4 HOH A 8 1008 34 HOH HOH . H 4 HOH A 9 1009 163 HOH HOH . H 4 HOH A 10 1010 91 HOH HOH . H 4 HOH A 11 1011 143 HOH HOH . H 4 HOH A 12 1012 146 HOH HOH . H 4 HOH A 13 1013 148 HOH HOH . H 4 HOH A 14 1014 111 HOH HOH . H 4 HOH A 15 1015 31 HOH HOH . H 4 HOH A 16 1016 13 HOH HOH . H 4 HOH A 17 1017 41 HOH HOH . H 4 HOH A 18 1018 110 HOH HOH . H 4 HOH A 19 1019 78 HOH HOH . H 4 HOH A 20 1020 19 HOH HOH . H 4 HOH A 21 1021 7 HOH HOH . H 4 HOH A 22 1022 20 HOH HOH . H 4 HOH A 23 1023 73 HOH HOH . H 4 HOH A 24 1024 101 HOH HOH . H 4 HOH A 25 1025 8 HOH HOH . H 4 HOH A 26 1026 102 HOH HOH . H 4 HOH A 27 1027 122 HOH HOH . H 4 HOH A 28 1028 107 HOH HOH . H 4 HOH A 29 1029 134 HOH HOH . H 4 HOH A 30 1030 63 HOH HOH . H 4 HOH A 31 1031 27 HOH HOH . H 4 HOH A 32 1032 156 HOH HOH . H 4 HOH A 33 1033 114 HOH HOH . H 4 HOH A 34 1034 22 HOH HOH . H 4 HOH A 35 1035 44 HOH HOH . H 4 HOH A 36 1036 145 HOH HOH . H 4 HOH A 37 1037 86 HOH HOH . H 4 HOH A 38 1038 65 HOH HOH . H 4 HOH A 39 1039 87 HOH HOH . H 4 HOH A 40 1040 2 HOH HOH . H 4 HOH A 41 1041 95 HOH HOH . H 4 HOH A 42 1042 108 HOH HOH . H 4 HOH A 43 1043 140 HOH HOH . H 4 HOH A 44 1044 137 HOH HOH . H 4 HOH A 45 1045 60 HOH HOH . H 4 HOH A 46 1046 45 HOH HOH . H 4 HOH A 47 1047 74 HOH HOH . H 4 HOH A 48 1048 194 HOH HOH . H 4 HOH A 49 1049 85 HOH HOH . H 4 HOH A 50 1050 12 HOH HOH . H 4 HOH A 51 1051 37 HOH HOH . H 4 HOH A 52 1052 67 HOH HOH . H 4 HOH A 53 1053 147 HOH HOH . H 4 HOH A 54 1054 25 HOH HOH . H 4 HOH A 55 1055 149 HOH HOH . H 4 HOH A 56 1056 66 HOH HOH . H 4 HOH A 57 1057 165 HOH HOH . H 4 HOH A 58 1058 96 HOH HOH . H 4 HOH A 59 1059 83 HOH HOH . H 4 HOH A 60 1060 18 HOH HOH . H 4 HOH A 61 1061 17 HOH HOH . H 4 HOH A 62 1062 46 HOH HOH . H 4 HOH A 63 1063 113 HOH HOH . H 4 HOH A 64 1064 16 HOH HOH . H 4 HOH A 65 1065 206 HOH HOH . H 4 HOH A 66 1066 26 HOH HOH . H 4 HOH A 67 1067 202 HOH HOH . H 4 HOH A 68 1068 3 HOH HOH . H 4 HOH A 69 1069 55 HOH HOH . H 4 HOH A 70 1070 138 HOH HOH . H 4 HOH A 71 1071 49 HOH HOH . H 4 HOH A 72 1072 187 HOH HOH . H 4 HOH A 73 1073 58 HOH HOH . H 4 HOH A 74 1074 79 HOH HOH . H 4 HOH A 75 1075 153 HOH HOH . H 4 HOH A 76 1076 29 HOH HOH . H 4 HOH A 77 1077 1 HOH HOH . H 4 HOH A 78 1078 28 HOH HOH . H 4 HOH A 79 1079 23 HOH HOH . H 4 HOH A 80 1080 197 HOH HOH . H 4 HOH A 81 1081 70 HOH HOH . H 4 HOH A 82 1082 121 HOH HOH . H 4 HOH A 83 1083 35 HOH HOH . H 4 HOH A 84 1084 10 HOH HOH . H 4 HOH A 85 1085 40 HOH HOH . H 4 HOH A 86 1086 81 HOH HOH . H 4 HOH A 87 1087 198 HOH HOH . H 4 HOH A 88 1088 120 HOH HOH . H 4 HOH A 89 1089 4 HOH HOH . H 4 HOH A 90 1090 129 HOH HOH . H 4 HOH A 91 1091 24 HOH HOH . H 4 HOH A 92 1092 167 HOH HOH . H 4 HOH A 93 1093 38 HOH HOH . H 4 HOH A 94 1094 59 HOH HOH . H 4 HOH A 95 1095 82 HOH HOH . H 4 HOH A 96 1096 5 HOH HOH . H 4 HOH A 97 1097 71 HOH HOH . H 4 HOH A 98 1098 123 HOH HOH . H 4 HOH A 99 1099 142 HOH HOH . H 4 HOH A 100 1100 61 HOH HOH . H 4 HOH A 101 1101 166 HOH HOH . H 4 HOH A 102 1102 52 HOH HOH . H 4 HOH A 103 1103 11 HOH HOH . H 4 HOH A 104 1104 151 HOH HOH . H 4 HOH A 105 1105 209 HOH HOH . H 4 HOH A 106 1106 76 HOH HOH . H 4 HOH A 107 1107 47 HOH HOH . H 4 HOH A 108 1108 80 HOH HOH . H 4 HOH A 109 1109 109 HOH HOH . H 4 HOH A 110 1110 141 HOH HOH . H 4 HOH A 111 1111 51 HOH HOH . H 4 HOH A 112 1112 9 HOH HOH . H 4 HOH A 113 1113 64 HOH HOH . H 4 HOH A 114 1114 57 HOH HOH . H 4 HOH A 115 1115 97 HOH HOH . H 4 HOH A 116 1116 15 HOH HOH . H 4 HOH A 117 1117 21 HOH HOH . H 4 HOH A 118 1118 128 HOH HOH . H 4 HOH A 119 1119 88 HOH HOH . H 4 HOH A 120 1120 14 HOH HOH . H 4 HOH A 121 1121 160 HOH HOH . H 4 HOH A 122 1122 43 HOH HOH . H 4 HOH A 123 1123 75 HOH HOH . H 4 HOH A 124 1124 30 HOH HOH . H 4 HOH A 125 1125 103 HOH HOH . H 4 HOH A 126 1126 181 HOH HOH . H 4 HOH A 127 1127 164 HOH HOH . H 4 HOH A 128 1128 152 HOH HOH . H 4 HOH A 129 1129 190 HOH HOH . H 4 HOH A 130 1130 53 HOH HOH . H 4 HOH A 131 1131 115 HOH HOH . H 4 HOH A 132 1132 6 HOH HOH . H 4 HOH A 133 1133 124 HOH HOH . H 4 HOH A 134 1134 94 HOH HOH . H 4 HOH A 135 1135 68 HOH HOH . H 4 HOH A 136 1136 33 HOH HOH . H 4 HOH A 137 1137 185 HOH HOH . H 4 HOH A 138 1138 84 HOH HOH . H 4 HOH A 139 1139 116 HOH HOH . H 4 HOH A 140 1140 177 HOH HOH . H 4 HOH A 141 1141 119 HOH HOH . H 4 HOH A 142 1142 99 HOH HOH . H 4 HOH A 143 1143 112 HOH HOH . H 4 HOH A 144 1144 89 HOH HOH . H 4 HOH A 145 1145 62 HOH HOH . H 4 HOH A 146 1146 213 HOH HOH . H 4 HOH A 147 1147 176 HOH HOH . H 4 HOH A 148 1148 204 HOH HOH . H 4 HOH A 149 1149 32 HOH HOH . H 4 HOH A 150 1150 77 HOH HOH . H 4 HOH A 151 1151 132 HOH HOH . H 4 HOH A 152 1152 92 HOH HOH . H 4 HOH A 153 1153 72 HOH HOH . H 4 HOH A 154 1154 50 HOH HOH . H 4 HOH A 155 1155 48 HOH HOH . H 4 HOH A 156 1156 200 HOH HOH . H 4 HOH A 157 1157 172 HOH HOH . H 4 HOH A 158 1158 117 HOH HOH . H 4 HOH A 159 1159 36 HOH HOH . H 4 HOH A 160 1160 106 HOH HOH . H 4 HOH A 161 1161 105 HOH HOH . H 4 HOH A 162 1162 150 HOH HOH . H 4 HOH A 163 1163 173 HOH HOH . H 4 HOH A 164 1164 182 HOH HOH . H 4 HOH A 165 1165 214 HOH HOH . H 4 HOH A 166 1166 207 HOH HOH . H 4 HOH A 167 1167 191 HOH HOH . H 4 HOH A 168 1168 180 HOH HOH . H 4 HOH A 169 1169 131 HOH HOH . H 4 HOH A 170 1170 154 HOH HOH . H 4 HOH A 171 1171 162 HOH HOH . H 4 HOH A 172 1172 98 HOH HOH . H 4 HOH A 173 1173 39 HOH HOH . H 4 HOH A 174 1174 100 HOH HOH . H 4 HOH A 175 1175 90 HOH HOH . H 4 HOH A 176 1176 155 HOH HOH . H 4 HOH A 177 1177 189 HOH HOH . H 4 HOH A 178 1178 127 HOH HOH . H 4 HOH A 179 1179 188 HOH HOH . H 4 HOH A 180 1180 170 HOH HOH . H 4 HOH A 181 1181 69 HOH HOH . H 4 HOH A 182 1182 192 HOH HOH . H 4 HOH A 183 1183 193 HOH HOH . H 4 HOH A 184 1184 169 HOH HOH . H 4 HOH A 185 1185 133 HOH HOH . H 4 HOH A 186 1186 130 HOH HOH . H 4 HOH A 187 1187 211 HOH HOH . H 4 HOH A 188 1188 125 HOH HOH . H 4 HOH A 189 1189 183 HOH HOH . H 4 HOH A 190 1190 201 HOH HOH . H 4 HOH A 191 1191 144 HOH HOH . H 4 HOH A 192 1192 174 HOH HOH . H 4 HOH A 193 1193 118 HOH HOH . H 4 HOH A 194 1194 196 HOH HOH . H 4 HOH A 195 1195 135 HOH HOH . H 4 HOH A 196 1196 54 HOH HOH . H 4 HOH A 197 1197 178 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 2 -4.156 -2.764 -19.42 1 51.45 ? C1 GOL 904 A 1 HETATM 2 O O1 GOL . . . E 2 -3.293 -3.567 -20.267 1 39.06 ? O1 GOL 904 A 1 HETATM 3 C C2 GOL . . . E 2 -4.843 -3.687 -18.411 1 53.04 ? C2 GOL 904 A 1 HETATM 4 O O2 GOL . . . E 2 -6.233 -3.586 -18.498 1 56.83 ? O2 GOL 904 A 1 HETATM 5 C C3 GOL . . . E 2 -4.343 -3.237 -17.008 1 54.47 ? C3 GOL 904 A 1 HETATM 6 O O3 GOL . . . E 2 -4.787 -4.214 -16.073 1 59.75 ? O3 GOL 904 A 1 HETATM 7 H H11 GOL . . . E 2 -4.836 -2.293 -19.927 1 61.8 ? H11 GOL 904 A 1 HETATM 8 H H12 GOL . . . E 2 -3.665 -2.081 -18.936 1 61.8 ? H12 GOL 904 A 1 HETATM 9 H HO1 GOL . . . E 2 -3.81 -3.918 -20.841 1 46.93 ? HO1 GOL 904 A 1 HETATM 10 H H2 GOL . . . E 2 -4.599 -4.609 -18.588 1 63.71 ? H2 GOL 904 A 1 HETATM 11 H HO2 GOL . . . E 2 -6.573 -4.138 -17.942 1 68.25 ? HO2 GOL 904 A 1 HETATM 12 H H31 GOL . . . E 2 -4.684 -2.347 -16.825 1 65.42 ? H31 GOL 904 A 1 HETATM 13 H H32 GOL . . . E 2 -3.378 -3.141 -17.035 1 65.42 ? H32 GOL 904 A 1 HETATM 14 H HO3 GOL . . . E 2 -4.5 -3.971 -15.314 1 71.76 ? HO3 GOL 904 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 14 #