data_8BAY # _model_server_result.job_id '_rxu7otbqCYodpdso1Ze9g' _model_server_result.datetime_utc '2024-11-30 00:09:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8bay # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"T","auth_seq_id":606}' # _entry.id 8BAY # _exptl.entry_id 8BAY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 6 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8BAY _cell.length_a 99.54 _cell.length_b 275.78 _cell.length_c 116.61 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8BAY _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,D,E,F,G,H,I,J,K,L,M,N,U,V 1 1 C,O,P,Q,R,S,T,W 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_575 x,-y+2,-z 1 0 0 0 -1 0 0 0 -1 0 551.56 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 I N N ? 6 J N N ? 6 T N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 252 A ASP 252 1_555 I CA CA . A CA 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? metalc ? metalc2 A OD1 ASP 275 A ASP 275 1_555 J CA CA . A CA 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? metalc ? metalc3 G O1 QDC . A QDC 704 1_555 J CA CA . A CA 707 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.727 ? metalc ? metalc4 G O4 QDC . A QDC 704 1_555 J CA CA . A CA 707 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.395 ? metalc ? metalc5 H O QD8 . A QD8 705 1_555 J CA CA . A CA 707 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.85 ? metalc ? metalc6 H O4 QD8 . A QD8 705 1_555 J CA CA . A CA 707 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.412 ? metalc ? metalc7 I CA CA . A CA 706 1_555 B OD1 ASP 275 B ASP 275 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.423 ? metalc ? metalc8 I CA CA . A CA 706 1_555 M O4 QDC . B QDC 803 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.432 ? metalc ? metalc9 I CA CA . A CA 706 1_555 N O4 QD8 . B QD8 804 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.608 ? metalc ? metalc10 I CA CA . A CA 706 1_555 V O HOH . B HOH 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? metalc ? metalc11 I CA CA . A CA 706 1_555 V O HOH . B HOH 946 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.469 ? metalc ? metalc12 J CA CA . A CA 707 1_555 U O HOH . A HOH 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? metalc ? metalc13 J CA CA . A CA 707 1_555 U O HOH . A HOH 807 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.429 ? metalc ? metalc14 J CA CA . A CA 707 1_555 B OD2 ASP 252 B ASP 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.569 ? metalc ? metalc15 C OD2 ASP 252 C ASP 252 1_555 T CA CA . C CA 606 4_575 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? metalc ? metalc16 C OD1 ASP 275 C ASP 275 1_555 T CA CA . C CA 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? metalc ? metalc17 R O4 QDC . C QDC 604 1_555 T CA CA . C CA 606 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.425 ? metalc ? metalc18 R O QDC . C QDC 604 1_555 T CA CA . C CA 606 1_555 ? B ? ? ? ? ? ? ? ? ? ? 3.026 ? metalc ? metalc19 S O1 QD8 . C QD8 605 1_555 T CA CA . C CA 606 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.732 ? metalc ? metalc20 S O4 QD8 . C QD8 605 1_555 T CA CA . C CA 606 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.558 ? metalc ? metalc21 T CA CA . C CA 606 1_555 W O HOH . C HOH 717 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? metalc ? metalc22 T CA CA . C CA 606 1_555 W O HOH . C HOH 788 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.472 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8BAY _atom_sites.fract_transf_matrix[1][1] 0.010046 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.003626 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008576 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 GOL A 1 701 701 GOL GOL . E 2 GOL A 1 702 801 GOL GOL . F 3 NDP A 1 703 901 NDP NPH . G 4 QDC A 1 704 1001 QDC XXX . H 5 QD8 A 1 705 601 QD8 BHB . I 6 CA A 1 706 1 CA CA . J 6 CA A 1 707 2 CA CA . K 3 NDP B 1 801 801 NDP NPH . L 2 GOL B 1 802 901 GOL GOL . M 4 QDC B 1 803 1001 QDC XXX . N 5 QD8 B 1 804 601 QD8 BHB . O 2 GOL C 1 601 601 GOL GOL . P 3 NDP C 1 602 801 NDP NPH . Q 2 GOL C 1 603 901 GOL GOL . R 4 QDC C 1 604 1001 QDC XXX . S 5 QD8 C 1 605 501 QD8 BHB . T 6 CA C 1 606 3 CA CA . U 7 HOH A 1 801 152 HOH HOH . U 7 HOH A 2 802 142 HOH HOH . U 7 HOH A 3 803 135 HOH HOH . U 7 HOH A 4 804 189 HOH HOH . U 7 HOH A 5 805 145 HOH HOH . U 7 HOH A 6 806 24 HOH HOH . U 7 HOH A 7 807 136 HOH HOH . U 7 HOH A 8 808 51 HOH HOH . U 7 HOH A 9 809 183 HOH HOH . U 7 HOH A 10 810 42 HOH HOH . U 7 HOH A 11 811 192 HOH HOH . U 7 HOH A 12 812 159 HOH HOH . U 7 HOH A 13 813 180 HOH HOH . U 7 HOH A 14 814 98 HOH HOH . U 7 HOH A 15 815 12 HOH HOH . U 7 HOH A 16 816 181 HOH HOH . U 7 HOH A 17 817 19 HOH HOH . U 7 HOH A 18 818 167 HOH HOH . U 7 HOH A 19 819 108 HOH HOH . U 7 HOH A 20 820 147 HOH HOH . U 7 HOH A 21 821 18 HOH HOH . U 7 HOH A 22 822 96 HOH HOH . U 7 HOH A 23 823 206 HOH HOH . U 7 HOH A 24 824 149 HOH HOH . U 7 HOH A 25 825 202 HOH HOH . U 7 HOH A 26 826 127 HOH HOH . U 7 HOH A 27 827 80 HOH HOH . U 7 HOH A 28 828 118 HOH HOH . U 7 HOH A 29 829 105 HOH HOH . U 7 HOH A 30 830 208 HOH HOH . U 7 HOH A 31 831 156 HOH HOH . U 7 HOH A 32 832 61 HOH HOH . U 7 HOH A 33 833 74 HOH HOH . U 7 HOH A 34 834 14 HOH HOH . U 7 HOH A 35 835 197 HOH HOH . U 7 HOH A 36 836 29 HOH HOH . U 7 HOH A 37 837 205 HOH HOH . U 7 HOH A 38 838 112 HOH HOH . U 7 HOH A 39 839 162 HOH HOH . U 7 HOH A 40 840 194 HOH HOH . U 7 HOH A 41 841 196 HOH HOH . U 7 HOH A 42 842 45 HOH HOH . U 7 HOH A 43 843 209 HOH HOH . U 7 HOH A 44 844 198 HOH HOH . U 7 HOH A 45 845 211 HOH HOH . U 7 HOH A 46 846 204 HOH HOH . U 7 HOH A 47 847 210 HOH HOH . U 7 HOH A 48 848 195 HOH HOH . U 7 HOH A 49 849 199 HOH HOH . U 7 HOH A 50 850 207 HOH HOH . U 7 HOH A 51 851 201 HOH HOH . U 7 HOH A 52 852 203 HOH HOH . V 7 HOH B 1 901 4 HOH HOH . V 7 HOH B 2 902 109 HOH HOH . V 7 HOH B 3 903 68 HOH HOH . V 7 HOH B 4 904 141 HOH HOH . V 7 HOH B 5 905 106 HOH HOH . V 7 HOH B 6 906 168 HOH HOH . V 7 HOH B 7 907 38 HOH HOH . V 7 HOH B 8 908 190 HOH HOH . V 7 HOH B 9 909 224 HOH HOH . V 7 HOH B 10 910 117 HOH HOH . V 7 HOH B 11 911 1 HOH HOH . V 7 HOH B 12 912 6 HOH HOH . V 7 HOH B 13 913 11 HOH HOH . V 7 HOH B 14 914 166 HOH HOH . V 7 HOH B 15 915 63 HOH HOH . V 7 HOH B 16 916 103 HOH HOH . V 7 HOH B 17 917 81 HOH HOH . V 7 HOH B 18 918 153 HOH HOH . V 7 HOH B 19 919 41 HOH HOH . V 7 HOH B 20 920 164 HOH HOH . V 7 HOH B 21 921 54 HOH HOH . V 7 HOH B 22 922 163 HOH HOH . V 7 HOH B 23 923 55 HOH HOH . V 7 HOH B 24 924 73 HOH HOH . V 7 HOH B 25 925 35 HOH HOH . V 7 HOH B 26 926 66 HOH HOH . V 7 HOH B 27 927 48 HOH HOH . V 7 HOH B 28 928 21 HOH HOH . V 7 HOH B 29 929 70 HOH HOH . V 7 HOH B 30 930 79 HOH HOH . V 7 HOH B 31 931 185 HOH HOH . V 7 HOH B 32 932 43 HOH HOH . V 7 HOH B 33 933 94 HOH HOH . V 7 HOH B 34 934 137 HOH HOH . V 7 HOH B 35 935 120 HOH HOH . V 7 HOH B 36 936 78 HOH HOH . V 7 HOH B 37 937 161 HOH HOH . V 7 HOH B 38 938 76 HOH HOH . V 7 HOH B 39 939 223 HOH HOH . V 7 HOH B 40 940 77 HOH HOH . V 7 HOH B 41 941 131 HOH HOH . V 7 HOH B 42 942 129 HOH HOH . V 7 HOH B 43 943 186 HOH HOH . V 7 HOH B 44 944 217 HOH HOH . V 7 HOH B 45 945 121 HOH HOH . V 7 HOH B 46 946 138 HOH HOH . V 7 HOH B 47 947 214 HOH HOH . V 7 HOH B 48 948 213 HOH HOH . V 7 HOH B 49 949 221 HOH HOH . V 7 HOH B 50 950 132 HOH HOH . V 7 HOH B 51 951 222 HOH HOH . V 7 HOH B 52 952 220 HOH HOH . V 7 HOH B 53 953 184 HOH HOH . V 7 HOH B 54 954 216 HOH HOH . V 7 HOH B 55 955 178 HOH HOH . V 7 HOH B 56 956 102 HOH HOH . V 7 HOH B 57 957 58 HOH HOH . V 7 HOH B 58 958 179 HOH HOH . V 7 HOH B 59 959 215 HOH HOH . W 7 HOH C 1 701 188 HOH HOH . W 7 HOH C 2 702 26 HOH HOH . W 7 HOH C 3 703 89 HOH HOH . W 7 HOH C 4 704 53 HOH HOH . W 7 HOH C 5 705 69 HOH HOH . W 7 HOH C 6 706 5 HOH HOH . W 7 HOH C 7 707 39 HOH HOH . W 7 HOH C 8 708 182 HOH HOH . W 7 HOH C 9 709 176 HOH HOH . W 7 HOH C 10 710 56 HOH HOH . W 7 HOH C 11 711 143 HOH HOH . W 7 HOH C 12 712 155 HOH HOH . W 7 HOH C 13 713 174 HOH HOH . W 7 HOH C 14 714 23 HOH HOH . W 7 HOH C 15 715 50 HOH HOH . W 7 HOH C 16 716 9 HOH HOH . W 7 HOH C 17 717 107 HOH HOH . W 7 HOH C 18 718 15 HOH HOH . W 7 HOH C 19 719 95 HOH HOH . W 7 HOH C 20 720 101 HOH HOH . W 7 HOH C 21 721 2 HOH HOH . W 7 HOH C 22 722 148 HOH HOH . W 7 HOH C 23 723 8 HOH HOH . W 7 HOH C 24 724 49 HOH HOH . W 7 HOH C 25 725 3 HOH HOH . W 7 HOH C 26 726 34 HOH HOH . W 7 HOH C 27 727 144 HOH HOH . W 7 HOH C 28 728 59 HOH HOH . W 7 HOH C 29 729 97 HOH HOH . W 7 HOH C 30 730 64 HOH HOH . W 7 HOH C 31 731 133 HOH HOH . W 7 HOH C 32 732 20 HOH HOH . W 7 HOH C 33 733 60 HOH HOH . W 7 HOH C 34 734 67 HOH HOH . W 7 HOH C 35 735 37 HOH HOH . W 7 HOH C 36 736 115 HOH HOH . W 7 HOH C 37 737 146 HOH HOH . W 7 HOH C 38 738 32 HOH HOH . W 7 HOH C 39 739 47 HOH HOH . W 7 HOH C 40 740 191 HOH HOH . W 7 HOH C 41 741 134 HOH HOH . W 7 HOH C 42 742 7 HOH HOH . W 7 HOH C 43 743 82 HOH HOH . W 7 HOH C 44 744 13 HOH HOH . W 7 HOH C 45 745 187 HOH HOH . W 7 HOH C 46 746 239 HOH HOH . W 7 HOH C 47 747 87 HOH HOH . W 7 HOH C 48 748 154 HOH HOH . W 7 HOH C 49 749 173 HOH HOH . W 7 HOH C 50 750 52 HOH HOH . W 7 HOH C 51 751 116 HOH HOH . W 7 HOH C 52 752 62 HOH HOH . W 7 HOH C 53 753 36 HOH HOH . W 7 HOH C 54 754 175 HOH HOH . W 7 HOH C 55 755 75 HOH HOH . W 7 HOH C 56 756 65 HOH HOH . W 7 HOH C 57 757 110 HOH HOH . W 7 HOH C 58 758 171 HOH HOH . W 7 HOH C 59 759 44 HOH HOH . W 7 HOH C 60 760 122 HOH HOH . W 7 HOH C 61 761 10 HOH HOH . W 7 HOH C 62 762 231 HOH HOH . W 7 HOH C 63 763 31 HOH HOH . W 7 HOH C 64 764 119 HOH HOH . W 7 HOH C 65 765 125 HOH HOH . W 7 HOH C 66 766 25 HOH HOH . W 7 HOH C 67 767 157 HOH HOH . W 7 HOH C 68 768 17 HOH HOH . W 7 HOH C 69 769 16 HOH HOH . W 7 HOH C 70 770 57 HOH HOH . W 7 HOH C 71 771 33 HOH HOH . W 7 HOH C 72 772 234 HOH HOH . W 7 HOH C 73 773 90 HOH HOH . W 7 HOH C 74 774 170 HOH HOH . W 7 HOH C 75 775 71 HOH HOH . W 7 HOH C 76 776 111 HOH HOH . W 7 HOH C 77 777 200 HOH HOH . W 7 HOH C 78 778 27 HOH HOH . W 7 HOH C 79 779 30 HOH HOH . W 7 HOH C 80 780 83 HOH HOH . W 7 HOH C 81 781 46 HOH HOH . W 7 HOH C 82 782 124 HOH HOH . W 7 HOH C 83 783 232 HOH HOH . W 7 HOH C 84 784 226 HOH HOH . W 7 HOH C 85 785 88 HOH HOH . W 7 HOH C 86 786 230 HOH HOH . W 7 HOH C 87 787 104 HOH HOH . W 7 HOH C 88 788 140 HOH HOH . W 7 HOH C 89 789 228 HOH HOH . W 7 HOH C 90 790 100 HOH HOH . W 7 HOH C 91 791 40 HOH HOH . W 7 HOH C 92 792 130 HOH HOH . W 7 HOH C 93 793 212 HOH HOH . W 7 HOH C 94 794 227 HOH HOH . W 7 HOH C 95 795 233 HOH HOH . W 7 HOH C 96 796 225 HOH HOH . W 7 HOH C 97 797 236 HOH HOH . W 7 HOH C 98 798 235 HOH HOH . W 7 HOH C 99 799 99 HOH HOH . W 7 HOH C 100 800 114 HOH HOH . W 7 HOH C 101 801 237 HOH HOH . W 7 HOH C 102 802 93 HOH HOH . W 7 HOH C 103 803 85 HOH HOH . W 7 HOH C 104 804 126 HOH HOH . W 7 HOH C 105 805 238 HOH HOH . W 7 HOH C 106 806 218 HOH HOH . W 7 HOH C 107 807 84 HOH HOH . W 7 HOH C 108 808 72 HOH HOH . W 7 HOH C 109 809 92 HOH HOH . W 7 HOH C 110 810 240 HOH HOH . W 7 HOH C 111 811 229 HOH HOH . W 7 HOH C 112 812 86 HOH HOH . W 7 HOH C 113 813 91 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id T _atom_site.label_entity_id 6 _atom_site.Cartn_x 27.652 _atom_site.Cartn_y 282.092 _atom_site.Cartn_z 9.316 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 54.56 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 606 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 35 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 96 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 16 _model_server_stats.element_count 1 #