data_8BBX # _model_server_result.job_id RmkiXCbcPYxJlQjRDQJEpA _model_server_result.datetime_utc '2024-10-21 02:09:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8bbx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":601}' # _entry.id 8BBX # _exptl.entry_id 8BBX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 194.226 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TETRAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8BBX _cell.length_a 102.17 _cell.length_b 156.206 _cell.length_c 193.4 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8BBX _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall 'C 2c 2' _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,M 1 1 B,G,H,I,J,K,L,N 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id L _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide 4 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing 4 ? 3 4 3 MAN BMA C1 O1 . O3 HO3 . sing 5 ? 3 5 4 MAN MAN C1 O1 . O2 HO2 . sing 6 ? 3 6 5 MAN MAN C1 O1 . O2 HO2 . sing 7 ? 3 7 3 MAN BMA C1 O1 . O6 HO6 . sing 8 ? 3 8 7 MAN MAN C1 O1 . O3 HO3 . sing 9 ? 3 9 8 MAN MAN C1 O1 . O3 HO3 . sing 10 ? 3 10 7 MAN MAN C1 O1 . O6 HO6 . sing 11 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 12 ? 4 3 2 BMA NAG C1 O1 . O4 HO4 . sing 13 ? 4 4 3 MAN BMA C1 O1 . O3 HO3 . sing 14 ? 4 5 4 MAN MAN C1 O1 . O2 HO2 . sing 15 ? 4 6 5 MAN MAN C1 O1 . O2 HO2 . sing 16 ? 4 7 3 MAN BMA C1 O1 . O6 HO6 . sing 17 ? 4 8 7 MAN MAN C1 O1 . O3 HO3 . sing 18 ? 4 9 7 MAN MAN C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C NAG 1 C 1 NAG C 1 NAG 2 n C NAG 2 C 2 NAG C 2 NAG 3 n D NAG 1 D 1 NAG D 1 NAG 3 n D NAG 2 D 2 NAG D 2 NAG 3 n D BMA 3 D 3 BMA D 3 BMA 3 n D MAN 4 D 4 MAN D 4 MAN 3 n D MAN 5 D 5 MAN D 5 MAN 3 n D MAN 6 D 6 MAN D 6 MAN 3 n D MAN 7 D 7 MAN D 7 MAN 3 n D MAN 8 D 8 MAN D 8 MAN 3 n D MAN 9 D 9 MAN D 9 MAN 3 n D MAN 10 D 10 MAN D 10 MAN 2 n E NAG 1 E 1 NAG E 1 NAG 2 n E NAG 2 E 2 NAG E 2 NAG 2 n F NAG 1 F 1 NAG F 1 NAG 2 n F NAG 2 F 2 NAG F 2 NAG 2 n G NAG 1 G 1 NAG G 1 NAG 2 n G NAG 2 G 2 NAG G 2 NAG 2 n H NAG 1 H 1 NAG H 1 NAG 2 n H NAG 2 H 2 NAG H 2 NAG 2 n I NAG 1 I 1 NAG I 1 NAG 2 n I NAG 2 I 2 NAG I 2 NAG 4 n J NAG 1 J 1 NAG J 1 NAG 4 n J NAG 2 J 2 NAG J 2 NAG 4 n J BMA 3 J 3 BMA J 3 BMA 4 n J MAN 4 J 4 MAN J 4 MAN 4 n J MAN 5 J 5 MAN J 5 MAN 4 n J MAN 6 J 6 MAN J 6 MAN 4 n J MAN 7 J 7 MAN J 7 MAN 4 n J MAN 8 J 8 MAN J 8 MAN 4 n J MAN 9 J 9 MAN J 9 MAN 2 n K NAG 1 K 1 NAG K 1 NAG 2 n K NAG 2 K 2 NAG K 2 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 186 A CYS 227 1_555 A SG CYS 254 A CYS 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? disulf ? disulf2 A SG CYS 295 A CYS 336 1_555 A SG CYS 309 A CYS 350 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? disulf ? disulf3 A SG CYS 338 A CYS 379 1_555 A SG CYS 370 A CYS 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? disulf ? disulf4 B SG CYS 186 B CYS 227 1_555 B SG CYS 254 B CYS 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? disulf ? disulf5 B SG CYS 295 B CYS 336 1_555 B SG CYS 309 B CYS 350 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? disulf ? disulf6 B SG CYS 338 B CYS 379 1_555 B SG CYS 370 B CYS 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? covale ? covale1 A ND2 ASN 59 A ASN 100 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? covale ? covale2 A ND2 ASN 185 A ASN 226 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale3 A ND2 ASN 314 A ASN 355 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale4 A ND2 ASN 405 A ASN 446 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale5 B ND2 ASN 59 B ASN 100 1_555 G C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale6 B ND2 ASN 185 B ASN 226 1_555 J C1 NAG . J NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale7 B ND2 ASN 287 B ASN 328 1_555 K C1 NAG . K NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale8 B ND2 ASN 314 B ASN 355 1_555 H C1 NAG . H NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale9 B ND2 ASN 405 B ASN 446 1_555 I C1 NAG . I NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale10 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale11 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale12 D O4 NAG . D NAG 2 1_555 D C1 BMA . D BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.425 ? covale ? covale13 D O3 BMA . D BMA 3 1_555 D C1 MAN . D MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale14 D O6 BMA . D BMA 3 1_555 D C1 MAN . D MAN 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale15 D O2 MAN . D MAN 4 1_555 D C1 MAN . D MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale16 D O2 MAN . D MAN 5 1_555 D C1 MAN . D MAN 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale17 D O3 MAN . D MAN 7 1_555 D C1 MAN . D MAN 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale18 D O6 MAN . D MAN 7 1_555 D C1 MAN . D MAN 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale19 D O3 MAN . D MAN 8 1_555 D C1 MAN . D MAN 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? covale ? covale20 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale21 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.478 ? covale ? covale22 G O4 NAG . G NAG 1 1_555 G C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale23 H O4 NAG . H NAG 1 1_555 H C1 NAG . H NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale24 I O4 NAG . I NAG 1 1_555 I C1 NAG . I NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale25 J O4 NAG . J NAG 1 1_555 J C1 NAG . J NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale26 J O4 NAG . J NAG 2 1_555 J C1 BMA . J BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale27 J O3 BMA . J BMA 3 1_555 J C1 MAN . J MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? covale ? covale28 J O6 BMA . J BMA 3 1_555 J C1 MAN . J MAN 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale29 J O2 MAN . J MAN 4 1_555 J C1 MAN . J MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale30 J O2 MAN . J MAN 5 1_555 J C1 MAN . J MAN 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale31 J O3 MAN . J MAN 7 1_555 J C1 MAN . J MAN 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale32 J O6 MAN . J MAN 7 1_555 J C1 MAN . J MAN 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale33 K O4 NAG . K NAG 1 1_555 K C1 NAG . K NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? # _chem_comp.formula 'C8 H18 O5' _chem_comp.formula_weight 194.226 _chem_comp.id PG4 _chem_comp.mon_nstd_flag . _chem_comp.name 'TETRAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 PG4 sing 315 n n O1 HO1 PG4 sing 316 n n C1 C2 PG4 sing 317 n n C1 H11 PG4 sing 318 n n C1 H12 PG4 sing 319 n n C2 O2 PG4 sing 320 n n C2 H21 PG4 sing 321 n n C2 H22 PG4 sing 322 n n O2 C3 PG4 sing 323 n n C3 C4 PG4 sing 324 n n C3 H31 PG4 sing 325 n n C3 H32 PG4 sing 326 n n C4 O3 PG4 sing 327 n n C4 H41 PG4 sing 328 n n C4 H42 PG4 sing 329 n n O3 C5 PG4 sing 330 n n C5 C6 PG4 sing 331 n n C5 H51 PG4 sing 332 n n C5 H52 PG4 sing 333 n n C6 O4 PG4 sing 334 n n C6 H61 PG4 sing 335 n n C6 H62 PG4 sing 336 n n O4 C7 PG4 sing 337 n n C7 C8 PG4 sing 338 n n C7 H71 PG4 sing 339 n n C7 H72 PG4 sing 340 n n C8 O5 PG4 sing 341 n n C8 H81 PG4 sing 342 n n C8 H82 PG4 sing 343 n n O5 HO5 PG4 sing 344 n n # _atom_sites.entry_id 8BBX _atom_sites.fract_transf_matrix[1][1] 0.009788 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006402 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005171 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code L 5 PG4 B 1 601 601 PG4 PG4 . M 6 HOH A 1 601 602 HOH HOH . M 6 HOH A 2 602 601 HOH HOH . M 6 HOH A 3 603 603 HOH HOH . M 6 HOH A 4 604 604 HOH HOH . M 6 HOH A 5 605 605 HOH HOH . M 6 HOH A 6 606 606 HOH HOH . M 6 HOH A 7 607 608 HOH HOH . M 6 HOH A 8 608 607 HOH HOH . N 6 HOH B 1 701 702 HOH HOH . N 6 HOH B 2 702 701 HOH HOH . N 6 HOH B 3 703 705 HOH HOH . N 6 HOH B 4 704 703 HOH HOH . N 6 HOH B 5 705 704 HOH HOH . N 6 HOH B 6 706 706 HOH HOH . N 6 HOH B 7 707 707 HOH HOH . N 6 HOH B 8 708 708 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 PG4 . . . L 5 18.934 -40.498 -15.614 1 57.65 ? O1 PG4 601 B 1 HETATM 2 C C1 PG4 . . . L 5 19.633 -39.268 -15.616 1 60.65 ? C1 PG4 601 B 1 HETATM 3 C C2 PG4 . . . L 5 20.953 -39.365 -16.396 1 69.18 ? C2 PG4 601 B 1 HETATM 4 O O2 PG4 . . . L 5 21.33 -38.112 -16.925 1 65.57 ? O2 PG4 601 B 1 HETATM 5 C C3 PG4 . . . L 5 22.575 -38.098 -17.6 1 60.98 ? C3 PG4 601 B 1 HETATM 6 C C4 PG4 . . . L 5 23.784 -38.03 -16.648 1 58.3 ? C4 PG4 601 B 1 HETATM 7 O O3 PG4 . . . L 5 24.559 -36.879 -16.898 1 57.4 ? O3 PG4 601 B 1 HETATM 8 C C5 PG4 . . . L 5 25.038 -36.197 -15.763 1 54.34 ? C5 PG4 601 B 1 HETATM 9 C C6 PG4 . . . L 5 26.575 -36.198 -15.696 1 58.55 ? C6 PG4 601 B 1 HETATM 10 O O4 PG4 . . . L 5 27.124 -37.475 -15.439 1 70.96 ? O4 PG4 601 B 1 HETATM 11 C C7 PG4 . . . L 5 28.239 -37.52 -14.564 1 62.68 ? C7 PG4 601 B 1 HETATM 12 C C8 PG4 . . . L 5 28.785 -38.955 -14.407 1 56.45 ? C8 PG4 601 B 1 HETATM 13 O O5 PG4 . . . L 5 28.909 -39.349 -13.058 1 53.87 ? O5 PG4 601 B 1 # _model_server_stats.io_time_ms 94 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 33 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 13 #