data_8BC7
#
_model_server_result.job_id            IZQIQgRU9EwliSE2v_ae2Q 
_model_server_result.datetime_utc      '2024-12-05 00:35:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8bc7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":202}' 
#
_entry.id    8BC7 
#
_exptl.entry_id    8BC7 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              258.229 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            S-Thalidomide 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8BC7 
_cell.length_a            56.606 
_cell.length_b            59.45 
_cell.length_c            89.059 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8BC7 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,F,J 1 1 
B,D,G,K 2 1 
C,H,I,L 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 D C GLN 7 D GLN 7 1_555 D N QCI 8 D QCI 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.589 ? 
metalc ? metalc1 A SG CYS 24 A CYS 24 1_555 E ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? 
metalc ? metalc2 A SG CYS 27 A CYS 27 1_555 E ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? 
metalc ? metalc3 A SG CYS 90 A CYS 90 1_555 E ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? 
metalc ? metalc4 A SG CYS 93 A CYS 93 1_555 E ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? 
metalc ? metalc5 B SG CYS 24 B CYS 24 1_555 G ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? 
metalc ? metalc6 B SG CYS 27 B CYS 27 1_555 G ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? 
metalc ? metalc7 B SG CYS 90 B CYS 90 1_555 G ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? 
metalc ? metalc8 B SG CYS 93 B CYS 93 1_555 G ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? 
metalc ? metalc9 C SG CYS 24 C CYS 24 1_555 H ZN ZN . C ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? 
metalc ? metalc10 C SG CYS 27 C CYS 27 1_555 H ZN ZN . C ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? 
metalc ? metalc11 C SG CYS 90 C CYS 90 1_555 H ZN ZN . C ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? 
metalc ? metalc12 C SG CYS 93 C CYS 93 1_555 H ZN ZN . C ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? 
#
_chem_comp.formula           'C13 H10 N2 O4' 
_chem_comp.formula_weight    258.229 
_chem_comp.id                EF2 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              S-Thalidomide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O01 C02 EF2 doub 83 n n 
C02 N03 EF2 sing 84 n n 
C02 C08 EF2 sing 85 n n 
N03 C04 EF2 sing 86 n n 
C04 O05 EF2 doub 87 n n 
C04 C06 EF2 sing 88 n n 
C06 C07 EF2 sing 89 n n 
C07 C08 EF2 sing 90 n n 
C08 N09 EF2 sing 91 n n 
N09 C3 EF2 sing 92 n n 
N09 C4 EF2 sing 93 n n 
C11 C12 EF2 sing 94 n y 
C11 C20 EF2 doub 95 n y 
C12 C13 EF2 doub 96 n y 
C13 C14 EF2 sing 97 n y 
C13 C4 EF2 sing 98 n n 
C14 C19 EF2 doub 99 n y 
C14 C3 EF2 sing 100 n n 
O16 C4 EF2 doub 101 n n 
O18 C3 EF2 doub 102 n n 
C19 C20 EF2 sing 103 n y 
N03 H03 EF2 sing 104 n n 
C08 H08 EF2 sing 105 n n 
C06 H061 EF2 sing 106 n n 
C06 H062 EF2 sing 107 n n 
C07 H071 EF2 sing 108 n n 
C07 H072 EF2 sing 109 n n 
C11 H11 EF2 sing 110 n n 
C12 H12 EF2 sing 111 n n 
C20 H20 EF2 sing 112 n n 
C19 H19 EF2 sing 113 n n 
#
_atom_sites.entry_id                     8BC7 
_atom_sites.fract_transf_matrix[1][1]    0.017666 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016821 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011229 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 ZN A 1 201 201 ZN ZN . 
F 4 EF2 A 1 202 202 EF2 EF2 . 
G 3 ZN B 1 201 201 ZN ZN . 
H 3 ZN C 1 201 201 ZN ZN . 
I 4 EF2 C 1 202 202 EF2 EF2 . 
J 5 HOH A 1 301 301 HOH HOH . 
J 5 HOH A 2 302 302 HOH HOH . 
J 5 HOH A 3 303 303 HOH HOH . 
J 5 HOH A 4 304 304 HOH HOH . 
J 5 HOH A 5 305 305 HOH HOH . 
J 5 HOH A 6 306 306 HOH HOH . 
J 5 HOH A 7 307 307 HOH HOH . 
J 5 HOH A 8 308 308 HOH HOH . 
J 5 HOH A 9 309 309 HOH HOH . 
J 5 HOH A 10 310 310 HOH HOH . 
J 5 HOH A 11 311 311 HOH HOH . 
J 5 HOH A 12 312 312 HOH HOH . 
J 5 HOH A 13 313 313 HOH HOH . 
J 5 HOH A 14 314 314 HOH HOH . 
J 5 HOH A 15 315 315 HOH HOH . 
J 5 HOH A 16 316 316 HOH HOH . 
J 5 HOH A 17 317 317 HOH HOH . 
J 5 HOH A 18 318 318 HOH HOH . 
J 5 HOH A 19 319 319 HOH HOH . 
J 5 HOH A 20 320 320 HOH HOH . 
J 5 HOH A 21 321 321 HOH HOH . 
J 5 HOH A 22 322 322 HOH HOH . 
J 5 HOH A 23 323 323 HOH HOH . 
J 5 HOH A 24 324 324 HOH HOH . 
J 5 HOH A 25 325 325 HOH HOH . 
J 5 HOH A 26 326 326 HOH HOH . 
J 5 HOH A 27 327 327 HOH HOH . 
J 5 HOH A 28 328 328 HOH HOH . 
J 5 HOH A 29 329 329 HOH HOH . 
J 5 HOH A 30 330 330 HOH HOH . 
J 5 HOH A 31 331 331 HOH HOH . 
J 5 HOH A 32 332 332 HOH HOH . 
J 5 HOH A 33 333 333 HOH HOH . 
J 5 HOH A 34 334 334 HOH HOH . 
J 5 HOH A 35 335 335 HOH HOH . 
J 5 HOH A 36 336 336 HOH HOH . 
J 5 HOH A 37 337 337 HOH HOH . 
J 5 HOH A 38 338 338 HOH HOH . 
J 5 HOH A 39 339 339 HOH HOH . 
J 5 HOH A 40 340 340 HOH HOH . 
J 5 HOH A 41 341 341 HOH HOH . 
J 5 HOH A 42 342 342 HOH HOH . 
J 5 HOH A 43 343 343 HOH HOH . 
J 5 HOH A 44 344 344 HOH HOH . 
K 5 HOH B 1 301 301 HOH HOH . 
K 5 HOH B 2 302 302 HOH HOH . 
K 5 HOH B 3 303 303 HOH HOH . 
K 5 HOH B 4 304 304 HOH HOH . 
K 5 HOH B 5 305 305 HOH HOH . 
K 5 HOH B 6 306 306 HOH HOH . 
K 5 HOH B 7 307 307 HOH HOH . 
K 5 HOH B 8 308 308 HOH HOH . 
K 5 HOH B 9 309 309 HOH HOH . 
K 5 HOH B 10 310 310 HOH HOH . 
K 5 HOH B 11 311 311 HOH HOH . 
K 5 HOH B 12 312 312 HOH HOH . 
K 5 HOH B 13 313 313 HOH HOH . 
K 5 HOH B 14 314 314 HOH HOH . 
K 5 HOH B 15 315 315 HOH HOH . 
K 5 HOH B 16 316 316 HOH HOH . 
K 5 HOH B 17 317 317 HOH HOH . 
K 5 HOH B 18 318 318 HOH HOH . 
K 5 HOH B 19 319 319 HOH HOH . 
K 5 HOH B 20 320 320 HOH HOH . 
K 5 HOH B 21 321 321 HOH HOH . 
K 5 HOH B 22 322 322 HOH HOH . 
K 5 HOH B 23 323 323 HOH HOH . 
K 5 HOH B 24 324 324 HOH HOH . 
K 5 HOH B 25 325 325 HOH HOH . 
K 5 HOH B 26 326 326 HOH HOH . 
K 5 HOH B 27 327 327 HOH HOH . 
K 5 HOH B 28 328 328 HOH HOH . 
K 5 HOH B 29 329 329 HOH HOH . 
K 5 HOH B 30 330 330 HOH HOH . 
K 5 HOH B 31 331 331 HOH HOH . 
K 5 HOH B 32 332 332 HOH HOH . 
K 5 HOH B 33 333 333 HOH HOH . 
K 5 HOH B 34 334 334 HOH HOH . 
K 5 HOH B 35 335 335 HOH HOH . 
K 5 HOH B 36 336 336 HOH HOH . 
K 5 HOH B 37 337 337 HOH HOH . 
K 5 HOH B 38 338 338 HOH HOH . 
K 5 HOH B 39 339 339 HOH HOH . 
K 5 HOH B 40 340 340 HOH HOH . 
K 5 HOH B 41 341 341 HOH HOH . 
K 5 HOH B 42 342 342 HOH HOH . 
K 5 HOH B 43 343 343 HOH HOH . 
K 5 HOH B 44 344 344 HOH HOH . 
K 5 HOH B 45 345 345 HOH HOH . 
L 5 HOH C 1 301 301 HOH HOH . 
L 5 HOH C 2 302 302 HOH HOH . 
L 5 HOH C 3 303 303 HOH HOH . 
L 5 HOH C 4 304 304 HOH HOH . 
L 5 HOH C 5 305 305 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O01 EF2 . . . I 4 22.848 -15.219 0.751 1 72.84 0 O01 EF2 202 C 1 
HETATM 2 C C02 EF2 . . . I 4 23.71 -14.944 -0.065 1 74.3 0 C02 EF2 202 C 1 
HETATM 3 N N03 EF2 . . . I 4 23.536 -15.171 -1.418 1 72.22 0 N03 EF2 202 C 1 
HETATM 4 C C04 EF2 . . . I 4 24.418 -14.882 -2.452 1 68.64 0 C04 EF2 202 C 1 
HETATM 5 O O05 EF2 . . . I 4 24.107 -15.061 -3.62 1 65.03 0 O05 EF2 202 C 1 
HETATM 6 C C06 EF2 . . . I 4 25.748 -14.317 -2.065 1 66.78 0 C06 EF2 202 C 1 
HETATM 7 C C07 EF2 . . . I 4 26.162 -14.645 -0.64 1 69.22 0 C07 EF2 202 C 1 
HETATM 8 C C08 EF2 . . . I 4 25.038 -14.292 0.32 1 72.33 0 C08 EF2 202 C 1 
HETATM 9 N N09 EF2 . . . I 4 25.361 -14.649 1.687 1 78.49 0 N09 EF2 202 C 1 
HETATM 10 C C11 EF2 . . . I 4 27.732 -16.112 5.329 1 90.27 0 C11 EF2 202 C 1 
HETATM 11 C C12 EF2 . . . I 4 27.179 -16.605 4.152 1 88.75 0 C12 EF2 202 C 1 
HETATM 12 C C13 EF2 . . . I 4 26.414 -15.734 3.403 1 85.94 0 C13 EF2 202 C 1 
HETATM 13 C C14 EF2 . . . I 4 26.205 -14.42 3.803 1 85.29 0 C14 EF2 202 C 1 
HETATM 14 O O16 EF2 . . . I 4 25.474 -16.974 1.51 1 81.07 0 O16 EF2 202 C 1 
HETATM 15 O O18 EF2 . . . I 4 24.958 -12.607 2.706 1 78.71 0 O18 EF2 202 C 1 
HETATM 16 C C19 EF2 . . . I 4 26.767 -13.923 4.965 1 87.24 0 C19 EF2 202 C 1 
HETATM 17 C C20 EF2 . . . I 4 27.526 -14.799 5.732 1 88.85 0 C20 EF2 202 C 1 
HETATM 18 C C3 EF2 . . . I 4 25.399 -13.738 2.749 1 81.98 0 C3 EF2 202 C 1 
HETATM 19 C C4 EF2 . . . I 4 25.703 -15.943 2.113 1 83.06 0 C4 EF2 202 C 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           36 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           495 
_model_server_stats.encode_time_ms          11 
_model_server_stats.element_count           19 
#