data_8BCA # _model_server_result.job_id '_KNOdrrjI_lrS_LoCE7n0w' _model_server_result.datetime_utc '2024-11-13 06:21:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8bca # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":5804}' # _entry.id 8BCA # _exptl.entry_id 8BCA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8BCA _cell.length_a 100.409 _cell.length_b 119.362 _cell.length_c 187.765 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8BCA _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id ND2 _struct_conn.ptnr1_label_comp_id ASN _struct_conn.ptnr1_label_seq_id 1034 _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id ASN _struct_conn.ptnr1_auth_seq_id 1423 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id L _struct_conn.ptnr2_label_atom_id O2 _struct_conn.ptnr2_label_comp_id EDO _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id EDO _struct_conn.ptnr2_auth_seq_id 5810 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.3 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 138 n n C1 C2 GOL sing 139 n n C1 H11 GOL sing 140 n n C1 H12 GOL sing 141 n n O1 HO1 GOL sing 142 n n C2 O2 GOL sing 143 n n C2 C3 GOL sing 144 n n C2 H2 GOL sing 145 n n O2 HO2 GOL sing 146 n n C3 O3 GOL sing 147 n n C3 H31 GOL sing 148 n n C3 H32 GOL sing 149 n n O3 HO3 GOL sing 150 n n # _atom_sites.entry_id 8BCA _atom_sites.fract_transf_matrix[1][1] 0.009959 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008378 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005326 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 Q96 B 1 5801 5801 Q96 LIG . D 3 Q96 B 1 5802 5901 Q96 LIG . E 4 EDO B 1 5803 5902 EDO EDO . F 5 GOL B 1 5804 5903 GOL GOL . G 4 EDO B 1 5805 5904 EDO EDO . H 4 EDO B 1 5806 5905 EDO EDO . I 4 EDO B 1 5807 5906 EDO EDO . J 4 EDO B 1 5808 5907 EDO EDO . K 4 EDO B 1 5809 5908 EDO EDO . L 4 EDO B 1 5810 5909 EDO EDO . M 4 EDO B 1 5811 5910 EDO EDO . N 4 EDO B 1 5812 5911 EDO EDO . O 6 HOH B 1 5901 42 HOH HOH . O 6 HOH B 2 5902 43 HOH HOH . O 6 HOH B 3 5903 83 HOH HOH . O 6 HOH B 4 5904 133 HOH HOH . O 6 HOH B 5 5905 139 HOH HOH . O 6 HOH B 6 5906 173 HOH HOH . O 6 HOH B 7 5907 84 HOH HOH . O 6 HOH B 8 5908 82 HOH HOH . O 6 HOH B 9 5909 16 HOH HOH . O 6 HOH B 10 5910 12 HOH HOH . O 6 HOH B 11 5911 63 HOH HOH . O 6 HOH B 12 5912 132 HOH HOH . O 6 HOH B 13 5913 151 HOH HOH . O 6 HOH B 14 5914 15 HOH HOH . O 6 HOH B 15 5915 47 HOH HOH . O 6 HOH B 16 5916 59 HOH HOH . O 6 HOH B 17 5917 56 HOH HOH . O 6 HOH B 18 5918 36 HOH HOH . O 6 HOH B 19 5919 152 HOH HOH . O 6 HOH B 20 5920 23 HOH HOH . O 6 HOH B 21 5921 62 HOH HOH . O 6 HOH B 22 5922 108 HOH HOH . O 6 HOH B 23 5923 109 HOH HOH . O 6 HOH B 24 5924 52 HOH HOH . O 6 HOH B 25 5925 46 HOH HOH . O 6 HOH B 26 5926 68 HOH HOH . O 6 HOH B 27 5927 175 HOH HOH . O 6 HOH B 28 5928 74 HOH HOH . O 6 HOH B 29 5929 163 HOH HOH . O 6 HOH B 30 5930 141 HOH HOH . O 6 HOH B 31 5931 50 HOH HOH . O 6 HOH B 32 5932 7 HOH HOH . O 6 HOH B 33 5933 131 HOH HOH . O 6 HOH B 34 5934 135 HOH HOH . O 6 HOH B 35 5935 148 HOH HOH . O 6 HOH B 36 5936 142 HOH HOH . O 6 HOH B 37 5937 30 HOH HOH . O 6 HOH B 38 5938 76 HOH HOH . O 6 HOH B 39 5939 161 HOH HOH . O 6 HOH B 40 5940 20 HOH HOH . O 6 HOH B 41 5941 86 HOH HOH . O 6 HOH B 42 5942 13 HOH HOH . O 6 HOH B 43 5943 136 HOH HOH . O 6 HOH B 44 5944 126 HOH HOH . O 6 HOH B 45 5945 101 HOH HOH . O 6 HOH B 46 5946 81 HOH HOH . O 6 HOH B 47 5947 158 HOH HOH . O 6 HOH B 48 5948 49 HOH HOH . O 6 HOH B 49 5949 72 HOH HOH . O 6 HOH B 50 5950 129 HOH HOH . O 6 HOH B 51 5951 39 HOH HOH . O 6 HOH B 52 5952 127 HOH HOH . O 6 HOH B 53 5953 9 HOH HOH . O 6 HOH B 54 5954 164 HOH HOH . O 6 HOH B 55 5955 140 HOH HOH . O 6 HOH B 56 5956 29 HOH HOH . O 6 HOH B 57 5957 58 HOH HOH . O 6 HOH B 58 5958 112 HOH HOH . O 6 HOH B 59 5959 2 HOH HOH . O 6 HOH B 60 5960 44 HOH HOH . O 6 HOH B 61 5961 100 HOH HOH . O 6 HOH B 62 5962 119 HOH HOH . O 6 HOH B 63 5963 115 HOH HOH . O 6 HOH B 64 5964 106 HOH HOH . O 6 HOH B 65 5965 75 HOH HOH . O 6 HOH B 66 5966 123 HOH HOH . O 6 HOH B 67 5967 57 HOH HOH . O 6 HOH B 68 5968 14 HOH HOH . O 6 HOH B 69 5969 98 HOH HOH . O 6 HOH B 70 5970 40 HOH HOH . O 6 HOH B 71 5971 147 HOH HOH . O 6 HOH B 72 5972 28 HOH HOH . O 6 HOH B 73 5973 121 HOH HOH . O 6 HOH B 74 5974 96 HOH HOH . O 6 HOH B 75 5975 157 HOH HOH . O 6 HOH B 76 5976 45 HOH HOH . O 6 HOH B 77 5977 165 HOH HOH . O 6 HOH B 78 5978 60 HOH HOH . O 6 HOH B 79 5979 10 HOH HOH . O 6 HOH B 80 5980 116 HOH HOH . O 6 HOH B 81 5981 134 HOH HOH . O 6 HOH B 82 5982 130 HOH HOH . O 6 HOH B 83 5983 32 HOH HOH . O 6 HOH B 84 5984 8 HOH HOH . O 6 HOH B 85 5985 71 HOH HOH . O 6 HOH B 86 5986 172 HOH HOH . O 6 HOH B 87 5987 77 HOH HOH . O 6 HOH B 88 5988 145 HOH HOH . O 6 HOH B 89 5989 159 HOH HOH . O 6 HOH B 90 5990 27 HOH HOH . O 6 HOH B 91 5991 21 HOH HOH . O 6 HOH B 92 5992 143 HOH HOH . O 6 HOH B 93 5993 25 HOH HOH . O 6 HOH B 94 5994 104 HOH HOH . O 6 HOH B 95 5995 125 HOH HOH . O 6 HOH B 96 5996 105 HOH HOH . O 6 HOH B 97 5997 70 HOH HOH . O 6 HOH B 98 5998 11 HOH HOH . O 6 HOH B 99 5999 6 HOH HOH . O 6 HOH B 100 6000 95 HOH HOH . O 6 HOH B 101 6001 38 HOH HOH . O 6 HOH B 102 6002 150 HOH HOH . O 6 HOH B 103 6003 128 HOH HOH . O 6 HOH B 104 6004 5 HOH HOH . O 6 HOH B 105 6005 118 HOH HOH . O 6 HOH B 106 6006 1 HOH HOH . O 6 HOH B 107 6007 146 HOH HOH . O 6 HOH B 108 6008 160 HOH HOH . O 6 HOH B 109 6009 110 HOH HOH . O 6 HOH B 110 6010 171 HOH HOH . O 6 HOH B 111 6011 170 HOH HOH . O 6 HOH B 112 6012 85 HOH HOH . O 6 HOH B 113 6013 37 HOH HOH . O 6 HOH B 114 6014 103 HOH HOH . O 6 HOH B 115 6015 80 HOH HOH . O 6 HOH B 116 6016 33 HOH HOH . O 6 HOH B 117 6017 156 HOH HOH . O 6 HOH B 118 6018 73 HOH HOH . O 6 HOH B 119 6019 117 HOH HOH . O 6 HOH B 120 6020 113 HOH HOH . O 6 HOH B 121 6021 166 HOH HOH . O 6 HOH B 122 6022 64 HOH HOH . O 6 HOH B 123 6023 55 HOH HOH . O 6 HOH B 124 6024 19 HOH HOH . O 6 HOH B 125 6025 167 HOH HOH . O 6 HOH B 126 6026 24 HOH HOH . O 6 HOH B 127 6027 35 HOH HOH . O 6 HOH B 128 6028 51 HOH HOH . O 6 HOH B 129 6029 41 HOH HOH . O 6 HOH B 130 6030 4 HOH HOH . O 6 HOH B 131 6031 48 HOH HOH . O 6 HOH B 132 6032 3 HOH HOH . O 6 HOH B 133 6033 22 HOH HOH . O 6 HOH B 134 6034 138 HOH HOH . O 6 HOH B 135 6035 153 HOH HOH . O 6 HOH B 136 6036 114 HOH HOH . O 6 HOH B 137 6037 54 HOH HOH . O 6 HOH B 138 6038 137 HOH HOH . O 6 HOH B 139 6039 34 HOH HOH . O 6 HOH B 140 6040 149 HOH HOH . O 6 HOH B 141 6041 79 HOH HOH . O 6 HOH B 142 6042 78 HOH HOH . O 6 HOH B 143 6043 124 HOH HOH . O 6 HOH B 144 6044 102 HOH HOH . O 6 HOH B 145 6045 162 HOH HOH . O 6 HOH B 146 6046 174 HOH HOH . O 6 HOH B 147 6047 26 HOH HOH . O 6 HOH B 148 6048 122 HOH HOH . O 6 HOH B 149 6049 69 HOH HOH . O 6 HOH B 150 6050 31 HOH HOH . O 6 HOH B 151 6051 155 HOH HOH . O 6 HOH B 152 6052 61 HOH HOH . O 6 HOH B 153 6053 99 HOH HOH . O 6 HOH B 154 6054 154 HOH HOH . O 6 HOH B 155 6055 53 HOH HOH . P 6 HOH J 1 2401 87 HOH HOH . P 6 HOH J 2 2402 89 HOH HOH . P 6 HOH J 3 2403 107 HOH HOH . P 6 HOH J 4 2404 168 HOH HOH . P 6 HOH J 5 2405 111 HOH HOH . P 6 HOH J 6 2406 66 HOH HOH . P 6 HOH J 7 2407 169 HOH HOH . P 6 HOH J 8 2408 90 HOH HOH . P 6 HOH J 9 2409 67 HOH HOH . P 6 HOH J 10 2410 91 HOH HOH . P 6 HOH J 11 2411 120 HOH HOH . P 6 HOH J 12 2412 93 HOH HOH . P 6 HOH J 13 2413 144 HOH HOH . P 6 HOH J 14 2414 94 HOH HOH . P 6 HOH J 15 2415 65 HOH HOH . P 6 HOH J 16 2416 97 HOH HOH . P 6 HOH J 17 2417 88 HOH HOH . P 6 HOH J 18 2418 92 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 5 -7.737 -12.862 -15.813 1 62.5 ? C1 GOL 5804 B 1 HETATM 2 O O1 GOL . . . F 5 -8.76 -13.776 -16.179 1 65.27 ? O1 GOL 5804 B 1 HETATM 3 C C2 GOL . . . F 5 -8.27 -11.998 -14.619 1 54.25 ? C2 GOL 5804 B 1 HETATM 4 O O2 GOL . . . F 5 -7.626 -12.331 -13.456 1 48.03 ? O2 GOL 5804 B 1 HETATM 5 C C3 GOL . . . F 5 -8.012 -10.497 -15.011 1 64.9 ? C3 GOL 5804 B 1 HETATM 6 O O3 GOL . . . F 5 -9.061 -10.058 -15.848 1 63.71 ? O3 GOL 5804 B 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 246 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #