data_8BCB # _model_server_result.job_id V841HpRREOg6IdSRsJDvoA _model_server_result.datetime_utc '2024-11-17 01:43:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8bcb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":2203}' # _entry.id 8BCB # _exptl.entry_id 8BCB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 16 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8BCB _cell.length_a 100.205 _cell.length_b 119.231 _cell.length_c 186.728 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8BCB _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N ? 3 M N N ? 3 N N N ? 3 O N N ? 3 P N N ? 3 Q N N ? 3 T N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 8BCB _atom_sites.fract_transf_matrix[1][1] 0.00998 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008387 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005355 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 EDO B 1 2201 2201 EDO EDO . D 3 EDO B 1 2202 2202 EDO EDO . E 3 EDO B 1 2203 2203 EDO EDO . F 3 EDO B 1 2204 2204 EDO EDO . G 3 EDO B 1 2205 2205 EDO EDO . H 3 EDO B 1 2206 2206 EDO EDO . I 3 EDO B 1 2207 2207 EDO EDO . J 3 EDO B 1 2208 2208 EDO EDO . K 3 EDO B 1 2209 2209 EDO EDO . L 3 EDO B 1 2210 2210 EDO EDO . M 3 EDO B 1 2211 2211 EDO EDO . N 3 EDO B 1 2212 2212 EDO EDO . O 3 EDO B 1 2213 2213 EDO EDO . P 3 EDO B 1 2214 2214 EDO EDO . Q 3 EDO B 1 2215 2215 EDO EDO . R 4 SAN B 1 2216 5801 SAN LIG . S 4 SAN B 1 2217 5901 SAN LIG . T 3 EDO J 1 2401 2401 EDO EDO . U 5 HOH B 1 2301 26 HOH HOH . U 5 HOH B 2 2302 79 HOH HOH . U 5 HOH B 3 2303 22 HOH HOH . U 5 HOH B 4 2304 174 HOH HOH . U 5 HOH B 5 2305 170 HOH HOH . U 5 HOH B 6 2306 116 HOH HOH . U 5 HOH B 7 2307 204 HOH HOH . U 5 HOH B 8 2308 143 HOH HOH . U 5 HOH B 9 2309 71 HOH HOH . U 5 HOH B 10 2310 156 HOH HOH . U 5 HOH B 11 2311 202 HOH HOH . U 5 HOH B 12 2312 84 HOH HOH . U 5 HOH B 13 2313 85 HOH HOH . U 5 HOH B 14 2314 107 HOH HOH . U 5 HOH B 15 2315 125 HOH HOH . U 5 HOH B 16 2316 87 HOH HOH . U 5 HOH B 17 2317 157 HOH HOH . U 5 HOH B 18 2318 171 HOH HOH . U 5 HOH B 19 2319 139 HOH HOH . U 5 HOH B 20 2320 74 HOH HOH . U 5 HOH B 21 2321 189 HOH HOH . U 5 HOH B 22 2322 72 HOH HOH . U 5 HOH B 23 2323 18 HOH HOH . U 5 HOH B 24 2324 120 HOH HOH . U 5 HOH B 25 2325 127 HOH HOH . U 5 HOH B 26 2326 10 HOH HOH . U 5 HOH B 27 2327 61 HOH HOH . U 5 HOH B 28 2328 131 HOH HOH . U 5 HOH B 29 2329 126 HOH HOH . U 5 HOH B 30 2330 175 HOH HOH . U 5 HOH B 31 2331 147 HOH HOH . U 5 HOH B 32 2332 118 HOH HOH . U 5 HOH B 33 2333 6 HOH HOH . U 5 HOH B 34 2334 20 HOH HOH . U 5 HOH B 35 2335 8 HOH HOH . U 5 HOH B 36 2336 182 HOH HOH . U 5 HOH B 37 2337 173 HOH HOH . U 5 HOH B 38 2338 176 HOH HOH . U 5 HOH B 39 2339 83 HOH HOH . U 5 HOH B 40 2340 81 HOH HOH . U 5 HOH B 41 2341 211 HOH HOH . U 5 HOH B 42 2342 80 HOH HOH . U 5 HOH B 43 2343 160 HOH HOH . U 5 HOH B 44 2344 69 HOH HOH . U 5 HOH B 45 2345 5 HOH HOH . U 5 HOH B 46 2346 76 HOH HOH . U 5 HOH B 47 2347 70 HOH HOH . U 5 HOH B 48 2348 146 HOH HOH . U 5 HOH B 49 2349 24 HOH HOH . U 5 HOH B 50 2350 90 HOH HOH . U 5 HOH B 51 2351 108 HOH HOH . U 5 HOH B 52 2352 193 HOH HOH . U 5 HOH B 53 2353 42 HOH HOH . U 5 HOH B 54 2354 64 HOH HOH . U 5 HOH B 55 2355 188 HOH HOH . U 5 HOH B 56 2356 92 HOH HOH . U 5 HOH B 57 2357 185 HOH HOH . U 5 HOH B 58 2358 91 HOH HOH . U 5 HOH B 59 2359 68 HOH HOH . U 5 HOH B 60 2360 177 HOH HOH . U 5 HOH B 61 2361 9 HOH HOH . U 5 HOH B 62 2362 104 HOH HOH . U 5 HOH B 63 2363 82 HOH HOH . U 5 HOH B 64 2364 180 HOH HOH . U 5 HOH B 65 2365 109 HOH HOH . U 5 HOH B 66 2366 133 HOH HOH . U 5 HOH B 67 2367 56 HOH HOH . U 5 HOH B 68 2368 100 HOH HOH . U 5 HOH B 69 2369 34 HOH HOH . U 5 HOH B 70 2370 37 HOH HOH . U 5 HOH B 71 2371 149 HOH HOH . U 5 HOH B 72 2372 135 HOH HOH . U 5 HOH B 73 2373 161 HOH HOH . U 5 HOH B 74 2374 195 HOH HOH . U 5 HOH B 75 2375 187 HOH HOH . U 5 HOH B 76 2376 129 HOH HOH . U 5 HOH B 77 2377 93 HOH HOH . U 5 HOH B 78 2378 29 HOH HOH . U 5 HOH B 79 2379 55 HOH HOH . U 5 HOH B 80 2380 128 HOH HOH . U 5 HOH B 81 2381 136 HOH HOH . U 5 HOH B 82 2382 183 HOH HOH . U 5 HOH B 83 2383 88 HOH HOH . U 5 HOH B 84 2384 59 HOH HOH . U 5 HOH B 85 2385 97 HOH HOH . U 5 HOH B 86 2386 60 HOH HOH . U 5 HOH B 87 2387 191 HOH HOH . U 5 HOH B 88 2388 123 HOH HOH . U 5 HOH B 89 2389 115 HOH HOH . U 5 HOH B 90 2390 199 HOH HOH . U 5 HOH B 91 2391 19 HOH HOH . U 5 HOH B 92 2392 158 HOH HOH . U 5 HOH B 93 2393 27 HOH HOH . U 5 HOH B 94 2394 203 HOH HOH . U 5 HOH B 95 2395 140 HOH HOH . U 5 HOH B 96 2396 36 HOH HOH . U 5 HOH B 97 2397 98 HOH HOH . U 5 HOH B 98 2398 124 HOH HOH . U 5 HOH B 99 2399 186 HOH HOH . U 5 HOH B 100 2400 39 HOH HOH . U 5 HOH B 101 2401 67 HOH HOH . U 5 HOH B 102 2402 11 HOH HOH . U 5 HOH B 103 2403 86 HOH HOH . U 5 HOH B 104 2404 2 HOH HOH . U 5 HOH B 105 2405 38 HOH HOH . U 5 HOH B 106 2406 1 HOH HOH . U 5 HOH B 107 2407 210 HOH HOH . U 5 HOH B 108 2408 105 HOH HOH . U 5 HOH B 109 2409 89 HOH HOH . U 5 HOH B 110 2410 114 HOH HOH . U 5 HOH B 111 2411 75 HOH HOH . U 5 HOH B 112 2412 214 HOH HOH . U 5 HOH B 113 2413 3 HOH HOH . U 5 HOH B 114 2414 25 HOH HOH . U 5 HOH B 115 2415 95 HOH HOH . U 5 HOH B 116 2416 213 HOH HOH . U 5 HOH B 117 2417 44 HOH HOH . U 5 HOH B 118 2418 15 HOH HOH . U 5 HOH B 119 2419 103 HOH HOH . U 5 HOH B 120 2420 142 HOH HOH . U 5 HOH B 121 2421 198 HOH HOH . U 5 HOH B 122 2422 13 HOH HOH . U 5 HOH B 123 2423 7 HOH HOH . U 5 HOH B 124 2424 205 HOH HOH . U 5 HOH B 125 2425 169 HOH HOH . U 5 HOH B 126 2426 35 HOH HOH . U 5 HOH B 127 2427 152 HOH HOH . U 5 HOH B 128 2428 172 HOH HOH . U 5 HOH B 129 2429 12 HOH HOH . U 5 HOH B 130 2430 99 HOH HOH . U 5 HOH B 131 2431 148 HOH HOH . U 5 HOH B 132 2432 159 HOH HOH . U 5 HOH B 133 2433 144 HOH HOH . U 5 HOH B 134 2434 106 HOH HOH . U 5 HOH B 135 2435 16 HOH HOH . U 5 HOH B 136 2436 57 HOH HOH . U 5 HOH B 137 2437 117 HOH HOH . U 5 HOH B 138 2438 23 HOH HOH . U 5 HOH B 139 2439 21 HOH HOH . U 5 HOH B 140 2440 178 HOH HOH . U 5 HOH B 141 2441 62 HOH HOH . U 5 HOH B 142 2442 119 HOH HOH . U 5 HOH B 143 2443 110 HOH HOH . U 5 HOH B 144 2444 155 HOH HOH . U 5 HOH B 145 2445 130 HOH HOH . U 5 HOH B 146 2446 162 HOH HOH . U 5 HOH B 147 2447 197 HOH HOH . U 5 HOH B 148 2448 17 HOH HOH . U 5 HOH B 149 2449 208 HOH HOH . U 5 HOH B 150 2450 181 HOH HOH . U 5 HOH B 151 2451 145 HOH HOH . U 5 HOH B 152 2452 196 HOH HOH . U 5 HOH B 153 2453 102 HOH HOH . U 5 HOH B 154 2454 151 HOH HOH . U 5 HOH B 155 2455 138 HOH HOH . U 5 HOH B 156 2456 111 HOH HOH . U 5 HOH B 157 2457 4 HOH HOH . U 5 HOH B 158 2458 194 HOH HOH . U 5 HOH B 159 2459 200 HOH HOH . U 5 HOH B 160 2460 63 HOH HOH . U 5 HOH B 161 2461 77 HOH HOH . U 5 HOH B 162 2462 209 HOH HOH . U 5 HOH B 163 2463 150 HOH HOH . U 5 HOH B 164 2464 43 HOH HOH . U 5 HOH B 165 2465 78 HOH HOH . U 5 HOH B 166 2466 121 HOH HOH . U 5 HOH B 167 2467 14 HOH HOH . U 5 HOH B 168 2468 153 HOH HOH . U 5 HOH B 169 2469 94 HOH HOH . U 5 HOH B 170 2470 28 HOH HOH . U 5 HOH B 171 2471 66 HOH HOH . U 5 HOH B 172 2472 154 HOH HOH . U 5 HOH B 173 2473 96 HOH HOH . U 5 HOH B 174 2474 122 HOH HOH . U 5 HOH B 175 2475 73 HOH HOH . U 5 HOH B 176 2476 132 HOH HOH . U 5 HOH B 177 2477 201 HOH HOH . U 5 HOH B 178 2478 184 HOH HOH . U 5 HOH B 179 2479 58 HOH HOH . U 5 HOH B 180 2480 65 HOH HOH . U 5 HOH B 181 2481 192 HOH HOH . U 5 HOH B 182 2482 137 HOH HOH . U 5 HOH B 183 2483 113 HOH HOH . U 5 HOH B 184 2484 179 HOH HOH . U 5 HOH B 185 2485 134 HOH HOH . U 5 HOH B 186 2486 141 HOH HOH . U 5 HOH B 187 2487 101 HOH HOH . U 5 HOH B 188 2488 33 HOH HOH . U 5 HOH B 189 2489 45 HOH HOH . U 5 HOH B 190 2490 112 HOH HOH . V 5 HOH J 1 2501 167 HOH HOH . V 5 HOH J 2 2502 166 HOH HOH . V 5 HOH J 3 2503 190 HOH HOH . V 5 HOH J 4 2504 47 HOH HOH . V 5 HOH J 5 2505 40 HOH HOH . V 5 HOH J 6 2506 49 HOH HOH . V 5 HOH J 7 2507 164 HOH HOH . V 5 HOH J 8 2508 50 HOH HOH . V 5 HOH J 9 2509 163 HOH HOH . V 5 HOH J 10 2510 206 HOH HOH . V 5 HOH J 11 2511 53 HOH HOH . V 5 HOH J 12 2512 165 HOH HOH . V 5 HOH J 13 2513 168 HOH HOH . V 5 HOH J 14 2514 46 HOH HOH . V 5 HOH J 15 2515 31 HOH HOH . V 5 HOH J 16 2516 207 HOH HOH . V 5 HOH J 17 2517 51 HOH HOH . V 5 HOH J 18 2518 212 HOH HOH . V 5 HOH J 19 2519 32 HOH HOH . V 5 HOH J 20 2520 54 HOH HOH . V 5 HOH J 21 2521 30 HOH HOH . V 5 HOH J 22 2522 52 HOH HOH . V 5 HOH J 23 2523 48 HOH HOH . V 5 HOH J 24 2524 41 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . E 3 -4.228 25.443 -23.907 1 51.07 ? C1 EDO 2203 B 1 HETATM 2 O O1 EDO . . . E 3 -2.99 25.74 -23.256 1 52.33 ? O1 EDO 2203 B 1 HETATM 3 C C2 EDO . . . E 3 -4.392 26.682 -24.744 1 54.91 ? C2 EDO 2203 B 1 HETATM 4 O O2 EDO . . . E 3 -3.391 27.546 -24.189 1 52.36 ? O2 EDO 2203 B 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 38 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 444 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 4 #