data_8BCQ
#
_model_server_result.job_id            yN1wBgOUpB47oo39ivHaDg 
_model_server_result.datetime_utc      '2025-07-17 11:49:46' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8bcq 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":306}' 
#
_entry.id    8BCQ 
#
_exptl.entry_id    8BCQ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    19 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          106.13 
_cell.angle_gamma         90 
_cell.entry_id            8BCQ 
_cell.length_a            129.979 
_cell.length_b            88.683 
_cell.length_c            169.284 
_cell.Z_PDB               20 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 8BCQ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    'C 2y' 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA dimeric 2 author_and_software_defined_assembly 3 
? tetrameric 4 author_defined_assembly 4 
? hexameric 6 author_defined_assembly 5 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,F,G,H,I,J,K,L,M,N,O,P,GA 1 1,2 
B,C,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,HA,IA 2 1 
D,E,FA,JA 3 1 
A,B,C,D,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA 4 1 
A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA 5 1 
A,F,G,H,I,J,K,L,M,N,O,P,GA 5 2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 82.948912 0 162.619936 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 I N N 
? 3 J N N 
? 3 K N N 
? 3 L N N 
? 3 M N N 
? 3 N N N 
? 3 O N N 
? 3 P N N 
? 3 U N N 
? 3 V N N 
? 3 W N N 
? 3 X N N 
? 3 Y N N 
? 3 Z N N 
? 3 AA N N 
? 3 CA N N 
? 3 DA N N 
? 3 EA N N 
? 3 FA N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     8BCQ 
_atom_sites.fract_transf_matrix[1][1]    0.007694 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002225 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011276 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006149 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 2 SO4 A 1 301 1 SO4 SO4 . 
G 2 SO4 A 1 302 2 SO4 SO4 . 
H 2 SO4 A 1 303 3 SO4 SO4 . 
I 3 GOL A 1 304 1 GOL GOL . 
J 3 GOL A 1 305 2 GOL GOL . 
K 3 GOL A 1 306 3 GOL GOL . 
L 3 GOL A 1 307 7 GOL GOL . 
M 3 GOL A 1 308 8 GOL GOL . 
N 3 GOL A 1 309 9 GOL GOL . 
O 3 GOL A 1 310 11 GOL GOL . 
P 3 GOL A 1 311 12 GOL GOL . 
Q 2 SO4 B 1 301 4 SO4 SO4 . 
R 2 SO4 B 1 302 5 SO4 SO4 . 
S 2 SO4 B 1 303 6 SO4 SO4 . 
T 2 SO4 B 1 304 7 SO4 SO4 . 
U 3 GOL B 1 305 4 GOL GOL . 
V 3 GOL B 1 306 5 GOL GOL . 
W 3 GOL B 1 307 14 GOL GOL . 
X 3 GOL B 1 308 15 GOL GOL . 
Y 3 GOL B 1 309 17 GOL GOL . 
Z 3 GOL B 1 310 20 GOL GOL . 
AA 3 GOL B 1 311 21 GOL GOL . 
BA 2 SO4 C 1 301 8 SO4 SO4 . 
CA 3 GOL C 1 302 6 GOL GOL . 
DA 3 GOL C 1 303 16 GOL GOL . 
EA 3 GOL C 1 304 22 GOL GOL . 
FA 3 GOL D 1 301 23 GOL GOL . 
GA 4 HOH A 1 401 8 HOH HOH . 
GA 4 HOH A 2 402 7 HOH HOH . 
GA 4 HOH A 3 403 10 HOH HOH . 
GA 4 HOH A 4 404 6 HOH HOH . 
GA 4 HOH A 5 405 11 HOH HOH . 
GA 4 HOH A 6 406 4 HOH HOH . 
GA 4 HOH A 7 407 1 HOH HOH . 
GA 4 HOH A 8 408 2 HOH HOH . 
GA 4 HOH A 9 409 5 HOH HOH . 
GA 4 HOH A 10 410 9 HOH HOH . 
HA 4 HOH B 1 401 12 HOH HOH . 
HA 4 HOH B 2 402 3 HOH HOH . 
HA 4 HOH B 3 403 13 HOH HOH . 
HA 4 HOH B 4 404 15 HOH HOH . 
IA 4 HOH C 1 401 14 HOH HOH . 
JA 4 HOH D 1 401 16 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . K 3 10.886 36.795 87.025 1 162.77 ? C1 GOL 306 A 1 
HETATM 2 O O1 GOL . . . K 3 9.664 36.248 86.587 1 152.4 ? O1 GOL 306 A 1 
HETATM 3 C C2 GOL . . . K 3 11.038 36.564 88.514 1 139.4 ? C2 GOL 306 A 1 
HETATM 4 O O2 GOL . . . K 3 11.999 37.468 89.012 1 134.94 ? O2 GOL 306 A 1 
HETATM 5 C C3 GOL . . . K 3 11.443 35.124 88.784 1 113.73 ? C3 GOL 306 A 1 
HETATM 6 O O3 GOL . . . K 3 11.61 34.977 90.178 1 125.37 ? O3 GOL 306 A 1 
#
_model_server_stats.io_time_ms              22 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           227 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           6 
#