data_8BDC
#
_model_server_result.job_id            f7IliwtR2IN_nRgUCxqzXA 
_model_server_result.datetime_utc      '2024-11-04 22:42:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8bdc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":1201}' 
#
_entry.id    8BDC 
#
_exptl.entry_id    8BDC 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              486.726 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CHOLESTEROL HEMISUCCINATE' 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8BDC 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8BDC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 G N N 
? 2 K N N 
? 2 M N N 
? 2 Q N N 
? 2 S N N 
? 2 W N N 
? 2 Y N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 55 A CYS 54 1_555 A SG CYS 69 A CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf2 B SG CYS 55 B CYS 54 1_555 B SG CYS 69 B CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf3 C SG CYS 55 C CYS 54 1_555 C SG CYS 69 C CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf4 D SG CYS 55 D CYS 54 1_555 D SG CYS 69 D CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
#
_chem_comp.formula           'C31 H50 O4' 
_chem_comp.formula_weight    486.726 
_chem_comp.id                Y01 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CHOLESTEROL HEMISUCCINATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAA CBA Y01 sing 541 n n 
CBA CAB Y01 sing 542 n n 
CBA CAN Y01 sing 543 n n 
CAN CAJ Y01 sing 544 n n 
CAJ CAO Y01 sing 545 n n 
CAO CBB Y01 sing 546 n n 
CBB CAC Y01 sing 547 n n 
CBB CBE Y01 sing 548 n n 
CBE CAP Y01 sing 549 n n 
CBE CBI Y01 sing 550 n n 
CAP CAQ Y01 sing 551 n n 
CAQ CBG Y01 sing 552 n n 
CBG CBI Y01 sing 553 n n 
CBG CBD Y01 sing 554 n n 
CBI CAE Y01 sing 555 n n 
CBI CAU Y01 sing 556 n n 
CAU CAS Y01 sing 557 n n 
CAS CBF Y01 sing 558 n n 
CBF CBD Y01 sing 559 n n 
CBF CBH Y01 sing 560 n n 
CBD CAK Y01 sing 561 n n 
CAK CAI Y01 sing 562 n n 
CAI CAZ Y01 doub 563 n n 
CAZ CAV Y01 sing 564 n n 
CAZ CBH Y01 sing 565 n n 
CAV CBC Y01 sing 566 n n 
CBH CAD Y01 sing 567 n n 
CBH CAT Y01 sing 568 n n 
CAT CAR Y01 sing 569 n n 
CAR CBC Y01 sing 570 n n 
CBC OAW Y01 sing 571 n n 
OAW CAY Y01 sing 572 n n 
CAY OAG Y01 doub 573 n n 
CAY CAM Y01 sing 574 n n 
CAM CAL Y01 sing 575 n n 
CAL CAX Y01 sing 576 n n 
CAX OAH Y01 sing 577 n n 
CAX OAF Y01 doub 578 n n 
CAA HAA1 Y01 sing 579 n n 
CAA HAA2 Y01 sing 580 n n 
CAA HAA3 Y01 sing 581 n n 
CBA HBA Y01 sing 582 n n 
CAB HAB1 Y01 sing 583 n n 
CAB HAB2 Y01 sing 584 n n 
CAB HAB3 Y01 sing 585 n n 
CAN HAN1 Y01 sing 586 n n 
CAN HAN2 Y01 sing 587 n n 
CAJ HAJ1 Y01 sing 588 n n 
CAJ HAJ2 Y01 sing 589 n n 
CAO HAO1 Y01 sing 590 n n 
CAO HAO2 Y01 sing 591 n n 
CBB HBB Y01 sing 592 n n 
CAC HAC1 Y01 sing 593 n n 
CAC HAC2 Y01 sing 594 n n 
CAC HAC3 Y01 sing 595 n n 
CBE HBE Y01 sing 596 n n 
CAP HAP1 Y01 sing 597 n n 
CAP HAP2 Y01 sing 598 n n 
CAQ HAQ1 Y01 sing 599 n n 
CAQ HAQ2 Y01 sing 600 n n 
CBG HBG Y01 sing 601 n n 
CBD HBD Y01 sing 602 n n 
CAE HAE1 Y01 sing 603 n n 
CAE HAE2 Y01 sing 604 n n 
CAE HAE3 Y01 sing 605 n n 
CAU HAU1 Y01 sing 606 n n 
CAU HAU2 Y01 sing 607 n n 
CAS HAS1 Y01 sing 608 n n 
CAS HAS2 Y01 sing 609 n n 
CBF HBF Y01 sing 610 n n 
CAK HAK1 Y01 sing 611 n n 
CAK HAK2 Y01 sing 612 n n 
CAI HAI Y01 sing 613 n n 
CAV HAV1 Y01 sing 614 n n 
CAV HAV2 Y01 sing 615 n n 
CBC HBC Y01 sing 616 n n 
CAD HAD1 Y01 sing 617 n n 
CAD HAD2 Y01 sing 618 n n 
CAD HAD3 Y01 sing 619 n n 
CAT HAT1 Y01 sing 620 n n 
CAT HAT2 Y01 sing 621 n n 
CAR HAR1 Y01 sing 622 n n 
CAR HAR2 Y01 sing 623 n n 
CAM HAM1 Y01 sing 624 n n 
CAM HAM2 Y01 sing 625 n n 
CAL HAL1 Y01 sing 626 n n 
CAL HAL2 Y01 sing 627 n n 
OAH HAH Y01 sing 628 n n 
#
_atom_sites.entry_id                     8BDC 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 Y01 A 1 1201 1201 Y01 Y01 . 
F 3 POV A 1 1202 1202 POV POV . 
G 2 Y01 A 1 1203 1203 Y01 Y01 . 
H 4 UND A 1 1204 1204 UND UND . 
I 5 NA A 1 1205 1205 NA NA . 
J 5 NA A 1 1206 1206 NA NA . 
K 2 Y01 B 1 1201 1201 Y01 Y01 . 
L 3 POV B 1 1202 1202 POV POV . 
M 2 Y01 B 1 1203 1203 Y01 Y01 . 
N 4 UND B 1 1204 1204 UND UND . 
O 5 NA B 1 1205 1205 NA NA . 
P 5 NA B 1 1206 1206 NA NA . 
Q 2 Y01 C 1 1201 1201 Y01 Y01 . 
R 3 POV C 1 1202 1202 POV POV . 
S 2 Y01 C 1 1203 1203 Y01 Y01 . 
T 4 UND C 1 1204 1204 UND UND . 
U 5 NA C 1 1205 1205 NA NA . 
V 5 NA C 1 1206 1206 NA NA . 
W 2 Y01 D 1 1201 1201 Y01 Y01 . 
X 3 POV D 1 1202 1202 POV POV . 
Y 2 Y01 D 1 1203 1203 Y01 Y01 . 
Z 4 UND D 1 1204 1204 UND UND . 
AA 5 NA D 1 1205 1205 NA NA . 
BA 5 NA D 1 1206 1206 NA NA . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAA Y01 . . . E 2 194.066 150.125 140.058 1 42.43 ? CAA Y01 1201 A 1 
HETATM 2 C CBA Y01 . . . E 2 194.842 149.071 140.824 1 42.75 ? CBA Y01 1201 A 1 
HETATM 3 C CAB Y01 . . . E 2 194.28 147.69 140.546 1 43.86 ? CAB Y01 1201 A 1 
HETATM 4 C CAN Y01 . . . E 2 194.879 149.371 142.312 1 39.08 ? CAN Y01 1201 A 1 
HETATM 5 C CAJ Y01 . . . E 2 193.532 149.397 143.023 1 38.95 ? CAJ Y01 1201 A 1 
HETATM 6 C CAO Y01 . . . E 2 193.659 149.575 144.53 1 39.59 ? CAO Y01 1201 A 1 
HETATM 7 C CBB Y01 . . . E 2 192.336 149.527 145.313 1 39.9 ? CBB Y01 1201 A 1 
HETATM 8 C CAC Y01 . . . E 2 191.451 148.402 144.785 1 44.35 ? CAC Y01 1201 A 1 
HETATM 9 C CBE Y01 . . . E 2 192.622 149.417 146.822 1 38.98 ? CBE Y01 1201 A 1 
HETATM 10 C CAP Y01 . . . E 2 193.856 150.247 147.231 1 41.56 ? CAP Y01 1201 A 1 
HETATM 11 C CAQ Y01 . . . E 2 193.633 150.669 148.693 1 42.88 ? CAQ Y01 1201 A 1 
HETATM 12 C CBG Y01 . . . E 2 192.373 149.909 149.124 1 38.68 ? CBG Y01 1201 A 1 
HETATM 13 C CBI Y01 . . . E 2 191.53 149.839 147.836 1 37.18 ? CBI Y01 1201 A 1 
HETATM 14 C CAE Y01 . . . E 2 190.937 151.209 147.472 1 41.79 ? CAE Y01 1201 A 1 
HETATM 15 C CAU Y01 . . . E 2 190.411 148.828 148.115 1 37.11 ? CAU Y01 1201 A 1 
HETATM 16 C CAS Y01 . . . E 2 189.575 149.224 149.334 1 42.71 ? CAS Y01 1201 A 1 
HETATM 17 C CBF Y01 . . . E 2 190.406 149.453 150.604 1 37.28 ? CBF Y01 1201 A 1 
HETATM 18 C CBD Y01 . . . E 2 191.597 150.389 150.353 1 38.58 ? CBD Y01 1201 A 1 
HETATM 19 C CAK Y01 . . . E 2 192.503 150.411 151.577 1 44.25 ? CAK Y01 1201 A 1 
HETATM 20 C CAI Y01 . . . E 2 191.735 150.533 152.854 1 44.08 ? CAI Y01 1201 A 1 
HETATM 21 C CAZ Y01 . . . E 2 190.436 150.307 152.986 1 37.85 ? CAZ Y01 1201 A 1 
HETATM 22 C CAV Y01 . . . E 2 189.763 150.465 154.329 1 39.29 ? CAV Y01 1201 A 1 
HETATM 23 C CBH Y01 . . . E 2 189.539 149.893 151.822 1 38.31 ? CBH Y01 1201 A 1 
HETATM 24 C CAD Y01 . . . E 2 188.63 151.084 151.468 1 38.37 ? CAD Y01 1201 A 1 
HETATM 25 C CAT Y01 . . . E 2 188.667 148.703 152.261 1 43.25 ? CAT Y01 1201 A 1 
HETATM 26 C CAR Y01 . . . E 2 187.938 148.94 153.585 1 36.06 ? CAR Y01 1201 A 1 
HETATM 27 C CBC Y01 . . . E 2 188.94 149.241 154.676 1 40.1 ? CBC Y01 1201 A 1 
HETATM 28 O OAW Y01 . . . E 2 188.274 149.473 155.961 1 44.76 ? OAW Y01 1201 A 1 
HETATM 29 C CAY Y01 . . . E 2 187.042 150.006 155.962 1 47.18 ? CAY Y01 1201 A 1 
HETATM 30 O OAG Y01 . . . E 2 186.781 151.094 155.521 1 50.17 ? OAG Y01 1201 A 1 
HETATM 31 C CAM Y01 . . . E 2 186.054 149.078 156.607 1 41.65 ? CAM Y01 1201 A 1 
HETATM 32 C CAL Y01 . . . E 2 185.14 149.77 157.605 1 42.99 ? CAL Y01 1201 A 1 
HETATM 33 C CAX Y01 . . . E 2 185.856 150.295 158.815 1 44.33 ? CAX Y01 1201 A 1 
HETATM 34 O OAH Y01 . . . E 2 186.742 149.462 159.297 1 42.26 ? OAH Y01 1201 A 1 
HETATM 35 O OAF Y01 . . . E 2 185.63 151.385 159.298 1 40.84 ? OAF Y01 1201 A 1 
#
_model_server_stats.io_time_ms              40 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    54 
_model_server_stats.query_time_ms           277 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           35 
#