data_8BDC
#
_model_server_result.job_id            jm-2m62NNPk7U_hby2Xa7g 
_model_server_result.datetime_utc      '2024-11-04 22:46:28' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8bdc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":1202}' 
#
_entry.id    8BDC 
#
_exptl.entry_id    8BDC 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              760.076 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8BDC 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8BDC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 L N N 
? 3 R N N 
? 3 X N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 55 A CYS 54 1_555 A SG CYS 69 A CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf2 B SG CYS 55 B CYS 54 1_555 B SG CYS 69 B CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf3 C SG CYS 55 C CYS 54 1_555 C SG CYS 69 C CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf4 D SG CYS 55 D CYS 54 1_555 D SG CYS 69 D CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
#
_chem_comp.formula           'C42 H82 N O8 P' 
_chem_comp.formula_weight    760.076 
_chem_comp.id                POV 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     POPC 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N C12 POV sing 258 n n 
N C13 POV sing 259 n n 
N C14 POV sing 260 n n 
N C15 POV sing 261 n n 
P O11 POV sing 262 n n 
P O12 POV sing 263 n n 
P O13 POV sing 264 n n 
P O14 POV doub 265 n n 
C1 C2 POV sing 266 n n 
C1 O11 POV sing 267 n n 
C1 H1 POV sing 268 n n 
C1 H1A POV sing 269 n n 
C2 C3 POV sing 270 n n 
C2 O21 POV sing 271 n n 
C2 H2 POV sing 272 n n 
C3 O31 POV sing 273 n n 
C3 H3 POV sing 274 n n 
C3 H3A POV sing 275 n n 
C210 C211 POV sing 276 n n 
C210 C29 POV doub 277 z n 
C210 H210 POV sing 278 n n 
C310 C311 POV sing 279 n n 
C310 C39 POV sing 280 n n 
C310 H310 POV sing 281 n n 
C310 H31A POV sing 282 n n 
C11 C12 POV sing 283 n n 
C11 O12 POV sing 284 n n 
C11 H11 POV sing 285 n n 
C11 H11A POV sing 286 n n 
C211 C212 POV sing 287 n n 
C211 H211 POV sing 288 n n 
C211 H21A POV sing 289 n n 
C311 C312 POV sing 290 n n 
C311 H311 POV sing 291 n n 
C311 H31B POV sing 292 n n 
C12 H12 POV sing 293 n n 
C12 H12A POV sing 294 n n 
C212 C213 POV sing 295 n n 
C212 H212 POV sing 296 n n 
C212 H21B POV sing 297 n n 
C312 C313 POV sing 298 n n 
C312 H312 POV sing 299 n n 
C312 H31C POV sing 300 n n 
C13 H13 POV sing 301 n n 
C13 H13A POV sing 302 n n 
C13 H13B POV sing 303 n n 
C213 C214 POV sing 304 n n 
C213 H213 POV sing 305 n n 
C213 H21C POV sing 306 n n 
C313 C314 POV sing 307 n n 
C313 H313 POV sing 308 n n 
C313 H31D POV sing 309 n n 
C14 H14 POV sing 310 n n 
C14 H14A POV sing 311 n n 
C14 H14B POV sing 312 n n 
C214 C215 POV sing 313 n n 
C214 H214 POV sing 314 n n 
C214 H21D POV sing 315 n n 
C314 C315 POV sing 316 n n 
C314 H314 POV sing 317 n n 
C314 H31E POV sing 318 n n 
C15 H15 POV sing 319 n n 
C15 H15A POV sing 320 n n 
C15 H15B POV sing 321 n n 
C215 C216 POV sing 322 n n 
C215 H215 POV sing 323 n n 
C215 H21E POV sing 324 n n 
C315 C316 POV sing 325 n n 
C315 H315 POV sing 326 n n 
C315 H31F POV sing 327 n n 
C216 C217 POV sing 328 n n 
C216 H216 POV sing 329 n n 
C216 H21F POV sing 330 n n 
C316 H316 POV sing 331 n n 
C316 H31G POV sing 332 n n 
C316 H31H POV sing 333 n n 
C217 C218 POV sing 334 n n 
C217 H217 POV sing 335 n n 
C217 H21G POV sing 336 n n 
C218 H218 POV sing 337 n n 
C218 H21H POV sing 338 n n 
C218 H21J POV sing 339 n n 
C21 O21 POV sing 340 n n 
C21 C22 POV sing 341 n n 
C21 O22 POV doub 342 n n 
C22 C23 POV sing 343 n n 
C22 H22 POV sing 344 n n 
C22 H22A POV sing 345 n n 
C23 C24 POV sing 346 n n 
C23 H23 POV sing 347 n n 
C23 H23A POV sing 348 n n 
C24 C25 POV sing 349 n n 
C24 H24 POV sing 350 n n 
C24 H24A POV sing 351 n n 
C25 C26 POV sing 352 n n 
C25 H25 POV sing 353 n n 
C25 H25A POV sing 354 n n 
C26 C27 POV sing 355 n n 
C26 H26 POV sing 356 n n 
C26 H26A POV sing 357 n n 
C27 C28 POV sing 358 n n 
C27 H27 POV sing 359 n n 
C27 H27A POV sing 360 n n 
C28 C29 POV sing 361 n n 
C28 H28 POV sing 362 n n 
C28 H28A POV sing 363 n n 
C29 H29 POV sing 364 n n 
C31 O31 POV sing 365 n n 
C31 C32 POV sing 366 n n 
C31 O32 POV doub 367 n n 
C32 C33 POV sing 368 n n 
C32 H32 POV sing 369 n n 
C32 H32A POV sing 370 n n 
C33 C34 POV sing 371 n n 
C33 H33 POV sing 372 n n 
C33 H33A POV sing 373 n n 
C34 C35 POV sing 374 n n 
C34 H34 POV sing 375 n n 
C34 H34A POV sing 376 n n 
C35 C36 POV sing 377 n n 
C35 H35 POV sing 378 n n 
C35 H35A POV sing 379 n n 
C36 C37 POV sing 380 n n 
C36 H36 POV sing 381 n n 
C36 H36A POV sing 382 n n 
C37 C38 POV sing 383 n n 
C37 H37 POV sing 384 n n 
C37 H37A POV sing 385 n n 
C38 C39 POV sing 386 n n 
C38 H38 POV sing 387 n n 
C38 H38A POV sing 388 n n 
C39 H39 POV sing 389 n n 
C39 H39A POV sing 390 n n 
#
_atom_sites.entry_id                     8BDC 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 Y01 A 1 1201 1201 Y01 Y01 . 
F 3 POV A 1 1202 1202 POV POV . 
G 2 Y01 A 1 1203 1203 Y01 Y01 . 
H 4 UND A 1 1204 1204 UND UND . 
I 5 NA A 1 1205 1205 NA NA . 
J 5 NA A 1 1206 1206 NA NA . 
K 2 Y01 B 1 1201 1201 Y01 Y01 . 
L 3 POV B 1 1202 1202 POV POV . 
M 2 Y01 B 1 1203 1203 Y01 Y01 . 
N 4 UND B 1 1204 1204 UND UND . 
O 5 NA B 1 1205 1205 NA NA . 
P 5 NA B 1 1206 1206 NA NA . 
Q 2 Y01 C 1 1201 1201 Y01 Y01 . 
R 3 POV C 1 1202 1202 POV POV . 
S 2 Y01 C 1 1203 1203 Y01 Y01 . 
T 4 UND C 1 1204 1204 UND UND . 
U 5 NA C 1 1205 1205 NA NA . 
V 5 NA C 1 1206 1206 NA NA . 
W 2 Y01 D 1 1201 1201 Y01 Y01 . 
X 3 POV D 1 1202 1202 POV POV . 
Y 2 Y01 D 1 1203 1203 Y01 Y01 . 
Z 4 UND D 1 1204 1204 UND UND . 
AA 5 NA D 1 1205 1205 NA NA . 
BA 5 NA D 1 1206 1206 NA NA . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N POV . . . L 3 191.319 191.686 158.969 1 51.55 ? N POV 1202 B 1 
HETATM 2 P P POV . . . L 3 188.834 190.135 155.067 1 66.16 ? P POV 1202 B 1 
HETATM 3 C C1 POV . . . L 3 189.912 190.566 152.706 1 45.16 ? C1 POV 1202 B 1 
HETATM 4 C C2 POV . . . L 3 189.666 190.123 151.26 1 47.42 ? C2 POV 1202 B 1 
HETATM 5 C C3 POV . . . L 3 188.541 190.875 150.583 1 47.67 ? C3 POV 1202 B 1 
HETATM 6 C C210 POV . . . L 3 191.948 191.322 140.682 1 43.44 ? C210 POV 1202 B 1 
HETATM 7 C C11 POV . . . L 3 190.351 190.064 157.194 1 46.59 ? C11 POV 1202 B 1 
HETATM 8 O O11 POV . . . L 3 189.299 189.654 153.586 1 51.78 ? O11 POV 1202 B 1 
HETATM 9 C C211 POV . . . L 3 191.944 189.965 140.052 1 43.56 ? C211 POV 1202 B 1 
HETATM 10 C C12 POV . . . L 3 190.352 191.431 157.842 1 46.29 ? C12 POV 1202 B 1 
HETATM 11 O O12 POV . . . L 3 190.325 190.127 155.788 1 45.64 ? O12 POV 1202 B 1 
HETATM 12 C C212 POV . . . L 3 192.014 190.029 138.526 1 42.71 ? C212 POV 1202 B 1 
HETATM 13 C C13 POV . . . L 3 191.326 193.122 159.361 1 44.3 ? C13 POV 1202 B 1 
HETATM 14 O O13 POV . . . L 3 188.385 191.559 154.94 1 50.01 ? O13 POV 1202 B 1 
HETATM 15 C C213 POV . . . L 3 192.433 188.702 137.909 1 41.93 ? C213 POV 1202 B 1 
HETATM 16 C C14 POV . . . L 3 190.859 190.873 160.13 1 49.47 ? C14 POV 1202 B 1 
HETATM 17 O O14 POV . . . L 3 187.968 189.11 155.727 1 49.19 ? O14 POV 1202 B 1 
HETATM 18 C C214 POV . . . L 3 192.938 188.833 136.479 1 43.46 ? C214 POV 1202 B 1 
HETATM 19 C C15 POV . . . L 3 192.706 191.259 158.625 1 48.3 ? C15 POV 1202 B 1 
HETATM 20 C C215 POV . . . L 3 193.967 187.771 136.115 1 44.87 ? C215 POV 1202 B 1 
HETATM 21 C C216 POV . . . L 3 194.512 187.908 134.7 1 45.02 ? C216 POV 1202 B 1 
HETATM 22 C C217 POV . . . L 3 193.62 187.267 133.645 1 41.87 ? C217 POV 1202 B 1 
HETATM 23 C C218 POV . . . L 3 193.311 185.809 133.944 1 44.36 ? C218 POV 1202 B 1 
HETATM 24 C C21 POV . . . L 3 189.072 188.195 149.982 1 43.7 ? C21 POV 1202 B 1 
HETATM 25 O O21 POV . . . L 3 189.356 188.731 151.167 1 42.84 ? O21 POV 1202 B 1 
HETATM 26 C C22 POV . . . L 3 190.289 188.118 149.103 1 40.63 ? C22 POV 1202 B 1 
HETATM 27 O O22 POV . . . L 3 187.971 187.822 149.672 1 49.9 ? O22 POV 1202 B 1 
HETATM 28 C C23 POV . . . L 3 190.065 187.352 147.811 1 39.03 ? C23 POV 1202 B 1 
HETATM 29 C C24 POV . . . L 3 189.417 188.217 146.739 1 37.08 ? C24 POV 1202 B 1 
HETATM 30 C C25 POV . . . L 3 190.42 189.043 145.949 1 39.23 ? C25 POV 1202 B 1 
HETATM 31 C C26 POV . . . L 3 189.843 189.601 144.656 1 39.63 ? C26 POV 1202 B 1 
HETATM 32 C C27 POV . . . L 3 190.827 190.463 143.876 1 41.81 ? C27 POV 1202 B 1 
HETATM 33 C C28 POV . . . L 3 190.258 190.929 142.537 1 42.99 ? C28 POV 1202 B 1 
HETATM 34 C C29 POV . . . L 3 191.237 191.727 141.734 1 46.38 ? C29 POV 1202 B 1 
HETATM 35 C C31 POV . . . L 3 189.733 192.601 149.462 1 49.02 ? C31 POV 1202 B 1 
HETATM 36 O O31 POV . . . L 3 188.909 192.242 150.439 1 50.83 ? O31 POV 1202 B 1 
HETATM 37 C C32 POV . . . L 3 189.036 193.486 148.471 1 42.67 ? C32 POV 1202 B 1 
HETATM 38 O O32 POV . . . L 3 190.888 192.264 149.394 1 48.74 ? O32 POV 1202 B 1 
HETATM 39 C C33 POV . . . L 3 189.811 193.696 147.184 1 41.92 ? C33 POV 1202 B 1 
HETATM 40 C C34 POV . . . L 3 189.084 194.66 146.26 1 44.42 ? C34 POV 1202 B 1 
HETATM 41 C C35 POV . . . L 3 189.767 194.86 144.915 1 43.05 ? C35 POV 1202 B 1 
HETATM 42 C C36 POV . . . L 3 189.025 195.865 144.045 1 44.41 ? C36 POV 1202 B 1 
HETATM 43 C C37 POV . . . L 3 189.539 195.942 142.614 1 42.29 ? C37 POV 1202 B 1 
HETATM 44 C C38 POV . . . L 3 191.033 196.227 142.545 1 47.13 ? C38 POV 1202 B 1 
HETATM 45 C C39 POV . . . L 3 191.564 196.384 141.125 1 45.18 ? C39 POV 1202 B 1 
#
_model_server_stats.io_time_ms              40 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    30 
_model_server_stats.query_time_ms           269 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           45 
#