data_8BDC # _model_server_result.job_id KdKkzYZ0p8BHCq_nQ_Fx0g _model_server_result.datetime_utc '2024-11-04 22:40:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8bdc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":1203}' # _entry.id 8BDC # _exptl.entry_id 8BDC _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 486.726 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHOLESTEROL HEMISUCCINATE' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8BDC _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8BDC _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 G N N ? 2 K N N ? 2 M N N ? 2 Q N N ? 2 S N N ? 2 W N N ? 2 Y N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 55 A CYS 54 1_555 A SG CYS 69 A CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf2 B SG CYS 55 B CYS 54 1_555 B SG CYS 69 B CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf3 C SG CYS 55 C CYS 54 1_555 C SG CYS 69 C CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf4 D SG CYS 55 D CYS 54 1_555 D SG CYS 69 D CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? # _chem_comp.formula 'C31 H50 O4' _chem_comp.formula_weight 486.726 _chem_comp.id Y01 _chem_comp.mon_nstd_flag . _chem_comp.name 'CHOLESTEROL HEMISUCCINATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA CBA Y01 sing 541 n n CBA CAB Y01 sing 542 n n CBA CAN Y01 sing 543 n n CAN CAJ Y01 sing 544 n n CAJ CAO Y01 sing 545 n n CAO CBB Y01 sing 546 n n CBB CAC Y01 sing 547 n n CBB CBE Y01 sing 548 n n CBE CAP Y01 sing 549 n n CBE CBI Y01 sing 550 n n CAP CAQ Y01 sing 551 n n CAQ CBG Y01 sing 552 n n CBG CBI Y01 sing 553 n n CBG CBD Y01 sing 554 n n CBI CAE Y01 sing 555 n n CBI CAU Y01 sing 556 n n CAU CAS Y01 sing 557 n n CAS CBF Y01 sing 558 n n CBF CBD Y01 sing 559 n n CBF CBH Y01 sing 560 n n CBD CAK Y01 sing 561 n n CAK CAI Y01 sing 562 n n CAI CAZ Y01 doub 563 n n CAZ CAV Y01 sing 564 n n CAZ CBH Y01 sing 565 n n CAV CBC Y01 sing 566 n n CBH CAD Y01 sing 567 n n CBH CAT Y01 sing 568 n n CAT CAR Y01 sing 569 n n CAR CBC Y01 sing 570 n n CBC OAW Y01 sing 571 n n OAW CAY Y01 sing 572 n n CAY OAG Y01 doub 573 n n CAY CAM Y01 sing 574 n n CAM CAL Y01 sing 575 n n CAL CAX Y01 sing 576 n n CAX OAH Y01 sing 577 n n CAX OAF Y01 doub 578 n n CAA HAA1 Y01 sing 579 n n CAA HAA2 Y01 sing 580 n n CAA HAA3 Y01 sing 581 n n CBA HBA Y01 sing 582 n n CAB HAB1 Y01 sing 583 n n CAB HAB2 Y01 sing 584 n n CAB HAB3 Y01 sing 585 n n CAN HAN1 Y01 sing 586 n n CAN HAN2 Y01 sing 587 n n CAJ HAJ1 Y01 sing 588 n n CAJ HAJ2 Y01 sing 589 n n CAO HAO1 Y01 sing 590 n n CAO HAO2 Y01 sing 591 n n CBB HBB Y01 sing 592 n n CAC HAC1 Y01 sing 593 n n CAC HAC2 Y01 sing 594 n n CAC HAC3 Y01 sing 595 n n CBE HBE Y01 sing 596 n n CAP HAP1 Y01 sing 597 n n CAP HAP2 Y01 sing 598 n n CAQ HAQ1 Y01 sing 599 n n CAQ HAQ2 Y01 sing 600 n n CBG HBG Y01 sing 601 n n CBD HBD Y01 sing 602 n n CAE HAE1 Y01 sing 603 n n CAE HAE2 Y01 sing 604 n n CAE HAE3 Y01 sing 605 n n CAU HAU1 Y01 sing 606 n n CAU HAU2 Y01 sing 607 n n CAS HAS1 Y01 sing 608 n n CAS HAS2 Y01 sing 609 n n CBF HBF Y01 sing 610 n n CAK HAK1 Y01 sing 611 n n CAK HAK2 Y01 sing 612 n n CAI HAI Y01 sing 613 n n CAV HAV1 Y01 sing 614 n n CAV HAV2 Y01 sing 615 n n CBC HBC Y01 sing 616 n n CAD HAD1 Y01 sing 617 n n CAD HAD2 Y01 sing 618 n n CAD HAD3 Y01 sing 619 n n CAT HAT1 Y01 sing 620 n n CAT HAT2 Y01 sing 621 n n CAR HAR1 Y01 sing 622 n n CAR HAR2 Y01 sing 623 n n CAM HAM1 Y01 sing 624 n n CAM HAM2 Y01 sing 625 n n CAL HAL1 Y01 sing 626 n n CAL HAL2 Y01 sing 627 n n OAH HAH Y01 sing 628 n n # _atom_sites.entry_id 8BDC _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 Y01 A 1 1201 1201 Y01 Y01 . F 3 POV A 1 1202 1202 POV POV . G 2 Y01 A 1 1203 1203 Y01 Y01 . H 4 UND A 1 1204 1204 UND UND . I 5 NA A 1 1205 1205 NA NA . J 5 NA A 1 1206 1206 NA NA . K 2 Y01 B 1 1201 1201 Y01 Y01 . L 3 POV B 1 1202 1202 POV POV . M 2 Y01 B 1 1203 1203 Y01 Y01 . N 4 UND B 1 1204 1204 UND UND . O 5 NA B 1 1205 1205 NA NA . P 5 NA B 1 1206 1206 NA NA . Q 2 Y01 C 1 1201 1201 Y01 Y01 . R 3 POV C 1 1202 1202 POV POV . S 2 Y01 C 1 1203 1203 Y01 Y01 . T 4 UND C 1 1204 1204 UND UND . U 5 NA C 1 1205 1205 NA NA . V 5 NA C 1 1206 1206 NA NA . W 2 Y01 D 1 1201 1201 Y01 Y01 . X 3 POV D 1 1202 1202 POV POV . Y 2 Y01 D 1 1203 1203 Y01 Y01 . Z 4 UND D 1 1204 1204 UND UND . AA 5 NA D 1 1205 1205 NA NA . BA 5 NA D 1 1206 1206 NA NA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CBB Y01 . . . G 2 200.573 147.873 139.948 1 41.84 ? CBB Y01 1203 A 1 HETATM 2 C CBE Y01 . . . G 2 200.555 147.816 141.487 1 44.06 ? CBE Y01 1203 A 1 HETATM 3 C CAP Y01 . . . G 2 201.865 147.247 142.067 1 41.88 ? CAP Y01 1203 A 1 HETATM 4 C CAQ Y01 . . . G 2 201.96 147.804 143.506 1 39.24 ? CAQ Y01 1203 A 1 HETATM 5 C CBG Y01 . . . G 2 200.657 148.596 143.705 1 38.82 ? CBG Y01 1203 A 1 HETATM 6 C CBI Y01 . . . G 2 200.329 149.114 142.292 1 42.24 ? CBI Y01 1203 A 1 HETATM 7 C CAE Y01 . . . G 2 201.305 150.219 141.855 1 40.35 ? CAE Y01 1203 A 1 HETATM 8 C CAU Y01 . . . G 2 198.895 149.653 142.34 1 43.75 ? CAU Y01 1203 A 1 HETATM 9 C CAS Y01 . . . G 2 198.73 150.732 143.409 1 44.09 ? CAS Y01 1203 A 1 HETATM 10 C CBF Y01 . . . G 2 199.167 150.277 144.808 1 40.76 ? CBF Y01 1203 A 1 HETATM 11 C CBD Y01 . . . G 2 200.574 149.662 144.804 1 39.6 ? CBD Y01 1203 A 1 HETATM 12 C CAK Y01 . . . G 2 200.871 149.044 146.165 1 40.58 ? CAK Y01 1203 A 1 HETATM 13 C CAI Y01 . . . G 2 200.457 149.926 147.3 1 40.09 ? CAI Y01 1203 A 1 HETATM 14 C CAZ Y01 . . . G 2 199.627 150.955 147.201 1 39.29 ? CAZ Y01 1203 A 1 HETATM 15 C CAV Y01 . . . G 2 199.285 151.784 148.417 1 39.83 ? CAV Y01 1203 A 1 HETATM 16 C CBH Y01 . . . G 2 198.992 151.389 145.884 1 40.89 ? CBH Y01 1203 A 1 HETATM 17 C CAD Y01 . . . G 2 199.652 152.711 145.445 1 43.29 ? CAD Y01 1203 A 1 HETATM 18 C CAT Y01 . . . G 2 197.49 151.621 146.108 1 41.37 ? CAT Y01 1203 A 1 HETATM 19 C CAR Y01 . . . G 2 197.209 152.565 147.276 1 39.68 ? CAR Y01 1203 A 1 HETATM 20 C CBC Y01 . . . G 2 197.789 151.999 148.551 1 37.97 ? CBC Y01 1203 A 1 HETATM 21 O OAW Y01 . . . G 2 197.571 152.966 149.624 1 43.22 ? OAW Y01 1203 A 1 HETATM 22 C CAY Y01 . . . G 2 196.765 152.604 150.631 1 43.86 ? CAY Y01 1203 A 1 HETATM 23 O OAG Y01 . . . G 2 196.084 151.614 150.62 1 46.26 ? OAG Y01 1203 A 1 HETATM 24 C CAM Y01 . . . G 2 196.831 153.591 151.758 1 39.25 ? CAM Y01 1203 A 1 HETATM 25 C CAL Y01 . . . G 2 195.576 153.599 152.609 1 39.05 ? CAL Y01 1203 A 1 HETATM 26 C CAX Y01 . . . G 2 195.651 154.55 153.768 1 47.68 ? CAX Y01 1203 A 1 HETATM 27 O OAH Y01 . . . G 2 194.609 155.334 153.863 1 50.37 ? OAH Y01 1203 A 1 HETATM 28 O OAF Y01 . . . G 2 196.589 154.585 154.538 1 48.17 ? OAF Y01 1203 A 1 # _model_server_stats.io_time_ms 34 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 244 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 28 #