data_8BDC # _model_server_result.job_id q94JZ51CdYpcRLcGkd0LXg _model_server_result.datetime_utc '2024-11-04 22:39:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8bdc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Z","auth_seq_id":1204}' # _entry.id 8BDC # _exptl.entry_id 8BDC _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 156.308 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description UNDECANE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8BDC _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8BDC _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 H N N ? 4 N N N ? 4 T N N ? 4 Z N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 55 A CYS 54 1_555 A SG CYS 69 A CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf2 B SG CYS 55 B CYS 54 1_555 B SG CYS 69 B CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf3 C SG CYS 55 C CYS 54 1_555 C SG CYS 69 C CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf4 D SG CYS 55 D CYS 54 1_555 D SG CYS 69 D CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? # _chem_comp.formula 'C11 H24' _chem_comp.formula_weight 156.308 _chem_comp.id UND _chem_comp.mon_nstd_flag . _chem_comp.name UNDECANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'LIPID FRAGMENT' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 UND sing 489 n n C1 H11 UND sing 490 n n C1 H12 UND sing 491 n n C1 H13 UND sing 492 n n C2 C3 UND sing 493 n n C2 H21 UND sing 494 n n C2 H22 UND sing 495 n n C3 C4 UND sing 496 n n C3 H31 UND sing 497 n n C3 H32 UND sing 498 n n C4 C5 UND sing 499 n n C4 H41 UND sing 500 n n C4 H42 UND sing 501 n n C5 C6 UND sing 502 n n C5 H51 UND sing 503 n n C5 H52 UND sing 504 n n C6 C7 UND sing 505 n n C6 H61 UND sing 506 n n C6 H62 UND sing 507 n n C7 C8 UND sing 508 n n C7 H71 UND sing 509 n n C7 H72 UND sing 510 n n C8 C9 UND sing 511 n n C8 H81 UND sing 512 n n C8 H82 UND sing 513 n n C9 C10 UND sing 514 n n C9 H91 UND sing 515 n n C9 H92 UND sing 516 n n C10 C11 UND sing 517 n n C10 H101 UND sing 518 n n C10 H102 UND sing 519 n n C11 H111 UND sing 520 n n C11 H112 UND sing 521 n n C11 H113 UND sing 522 n n # _atom_sites.entry_id 8BDC _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 Y01 A 1 1201 1201 Y01 Y01 . F 3 POV A 1 1202 1202 POV POV . G 2 Y01 A 1 1203 1203 Y01 Y01 . H 4 UND A 1 1204 1204 UND UND . I 5 NA A 1 1205 1205 NA NA . J 5 NA A 1 1206 1206 NA NA . K 2 Y01 B 1 1201 1201 Y01 Y01 . L 3 POV B 1 1202 1202 POV POV . M 2 Y01 B 1 1203 1203 Y01 Y01 . N 4 UND B 1 1204 1204 UND UND . O 5 NA B 1 1205 1205 NA NA . P 5 NA B 1 1206 1206 NA NA . Q 2 Y01 C 1 1201 1201 Y01 Y01 . R 3 POV C 1 1202 1202 POV POV . S 2 Y01 C 1 1203 1203 Y01 Y01 . T 4 UND C 1 1204 1204 UND UND . U 5 NA C 1 1205 1205 NA NA . V 5 NA C 1 1206 1206 NA NA . W 2 Y01 D 1 1201 1201 Y01 Y01 . X 3 POV D 1 1202 1202 POV POV . Y 2 Y01 D 1 1203 1203 Y01 Y01 . Z 4 UND D 1 1204 1204 UND UND . AA 5 NA D 1 1205 1205 NA NA . BA 5 NA D 1 1206 1206 NA NA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 UND . . . Z 4 169.025 173.292 139.49 1 40.94 ? C1 UND 1204 D 1 HETATM 2 C C2 UND . . . Z 4 167.608 173.356 138.967 1 45.19 ? C2 UND 1204 D 1 HETATM 3 C C3 UND . . . Z 4 167.307 174.638 138.211 1 40.96 ? C3 UND 1204 D 1 HETATM 4 C C4 UND . . . Z 4 165.896 174.702 137.648 1 40.41 ? C4 UND 1204 D 1 HETATM 5 C C5 UND . . . Z 4 165.616 175.952 136.829 1 41.5 ? C5 UND 1204 D 1 HETATM 6 C C6 UND . . . Z 4 164.207 176.012 136.257 1 40.99 ? C6 UND 1204 D 1 HETATM 7 C C7 UND . . . Z 4 163.911 177.29 135.489 1 41.14 ? C7 UND 1204 D 1 HETATM 8 C C8 UND . . . Z 4 162.476 177.4 134.994 1 43 ? C8 UND 1204 D 1 HETATM 9 C C9 UND . . . Z 4 162.091 176.353 133.96 1 41.88 ? C9 UND 1204 D 1 HETATM 10 C C10 UND . . . Z 4 160.693 176.534 133.396 1 37.85 ? C10 UND 1204 D 1 HETATM 11 C C11 UND . . . Z 4 160.358 175.539 132.313 1 38.83 ? C11 UND 1204 D 1 # _model_server_stats.io_time_ms 217 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 201 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 11 #