data_8BDT
#
_model_server_result.job_id            4Uc0LTGKdMW-rF3qRqsyIA 
_model_server_result.datetime_utc      '2024-10-19 03:35:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8bdt 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":201}' 
#
_entry.id    8BDT 
#
_exptl.entry_id    8BDT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              102.046 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MALONATE ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            8BDT 
_cell.length_a            82.483 
_cell.length_b            82.483 
_cell.length_c            169.088 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8BDT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        145 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? tetrameric 4 author_defined_assembly 1 
? tetrameric 4 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,I,L,M,N,O 1 1 
E,F,G,H,J,K,P,Q,R,S 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      6 
_struct_asym.id                             J 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C3 H2 O4 -2' 
_chem_comp.formula_weight    102.046 
_chem_comp.id                MLI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MALONATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 MLI sing 237 n n 
C1 C3 MLI sing 238 n n 
C1 H11 MLI sing 239 n n 
C1 H12 MLI sing 240 n n 
C2 O6 MLI doub 241 n n 
C2 O7 MLI sing 242 n n 
C3 O8 MLI doub 243 n n 
C3 O9 MLI sing 244 n n 
#
_atom_sites.entry_id                     8BDT 
_atom_sites.fract_transf_matrix[1][1]    0.012124 
_atom_sites.fract_transf_matrix[1][2]    0.007 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013999 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005914 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 5 QLX D 1 301 301 QLX XXX . 
J 6 MLI G 1 201 201 MLI MLI . 
K 5 QLX H 1 301 301 QLX XXX . 
L 7 HOH A 1 501 19 HOH HOH . 
L 7 HOH A 2 502 103 HOH HOH . 
L 7 HOH A 3 503 13 HOH HOH . 
L 7 HOH A 4 504 58 HOH HOH . 
L 7 HOH A 5 505 52 HOH HOH . 
L 7 HOH A 6 506 14 HOH HOH . 
L 7 HOH A 7 507 37 HOH HOH . 
M 7 HOH B 1 201 8 HOH HOH . 
M 7 HOH B 2 202 8 HOH HOH . 
M 7 HOH B 3 203 54 HOH HOH . 
M 7 HOH B 4 204 3 HOH HOH . 
M 7 HOH B 5 205 17 HOH HOH . 
M 7 HOH B 6 206 30 HOH HOH . 
M 7 HOH B 7 207 64 HOH HOH . 
M 7 HOH B 8 208 126 HOH HOH . 
N 7 HOH C 1 201 65 HOH HOH . 
N 7 HOH C 2 202 9 HOH HOH . 
N 7 HOH C 3 203 7 HOH HOH . 
N 7 HOH C 4 204 24 HOH HOH . 
N 7 HOH C 5 205 8 HOH HOH . 
N 7 HOH C 6 206 12 HOH HOH . 
N 7 HOH C 7 207 22 HOH HOH . 
N 7 HOH C 8 208 4 HOH HOH . 
N 7 HOH C 9 209 15 HOH HOH . 
N 7 HOH C 10 210 40 HOH HOH . 
N 7 HOH C 11 211 110 HOH HOH . 
N 7 HOH C 12 212 6 HOH HOH . 
N 7 HOH C 13 213 69 HOH HOH . 
N 7 HOH C 14 214 31 HOH HOH . 
N 7 HOH C 15 215 158 HOH HOH . 
O 7 HOH D 1 401 1 HOH HOH . 
O 7 HOH D 2 402 40 HOH HOH . 
O 7 HOH D 3 403 7 HOH HOH . 
O 7 HOH D 4 404 4 HOH HOH . 
O 7 HOH D 5 405 73 HOH HOH . 
O 7 HOH D 6 406 6 HOH HOH . 
O 7 HOH D 7 407 26 HOH HOH . 
O 7 HOH D 8 408 1 HOH HOH . 
O 7 HOH D 9 409 84 HOH HOH . 
P 7 HOH E 1 501 5 HOH HOH . 
P 7 HOH E 2 502 21 HOH HOH . 
P 7 HOH E 3 503 55 HOH HOH . 
P 7 HOH E 4 504 3 HOH HOH . 
P 7 HOH E 5 505 7 HOH HOH . 
P 7 HOH E 6 506 71 HOH HOH . 
P 7 HOH E 7 507 9 HOH HOH . 
P 7 HOH E 8 508 77 HOH HOH . 
P 7 HOH E 9 509 2 HOH HOH . 
Q 7 HOH F 1 201 28 HOH HOH . 
Q 7 HOH F 2 202 85 HOH HOH . 
Q 7 HOH F 3 203 11 HOH HOH . 
R 7 HOH G 1 301 66 HOH HOH . 
R 7 HOH G 2 302 41 HOH HOH . 
R 7 HOH G 3 303 2 HOH HOH . 
R 7 HOH G 4 304 4 HOH HOH . 
R 7 HOH G 5 305 36 HOH HOH . 
R 7 HOH G 6 306 33 HOH HOH . 
R 7 HOH G 7 307 44 HOH HOH . 
R 7 HOH G 8 308 21 HOH HOH . 
R 7 HOH G 9 309 44 HOH HOH . 
R 7 HOH G 10 310 1 HOH HOH . 
S 7 HOH H 1 401 1 HOH HOH . 
S 7 HOH H 2 402 48 HOH HOH . 
S 7 HOH H 3 403 61 HOH HOH . 
S 7 HOH H 4 404 100 HOH HOH . 
S 7 HOH H 5 405 38 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MLI . . . J 6 16.239 7.278 -6.869 1 99.04 ? C1 MLI 201 G 1 
HETATM 2 C C2 MLI . . . J 6 15.595 7.785 -8.171 1 97.62 ? C2 MLI 201 G 1 
HETATM 3 C C3 MLI . . . J 6 15.861 8.06 -5.588 1 101.63 ? C3 MLI 201 G 1 
HETATM 4 O O6 MLI . . . J 6 16.339 8.201 -9.069 1 99.16 ? O6 MLI 201 G 1 
HETATM 5 O O7 MLI . . . J 6 14.352 7.772 -8.269 1 91.67 ? O7 MLI 201 G 1 
HETATM 6 O O8 MLI . . . J 6 15.296 9.175 -5.72 1 94.36 ? O8 MLI 201 G 1 
HETATM 7 O O9 MLI . . . J 6 16.13 7.551 -4.454 1 94.77 ? O9 MLI 201 G 1 
#
_model_server_stats.io_time_ms              80 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           319 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           7 
#