data_8BDX
#
_model_server_result.job_id            f91A0FqMh1SSbidEdQzw-w 
_model_server_result.datetime_utc      '2024-10-19 03:35:27' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8bdx 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":301}' 
#
_entry.id    8BDX 
#
_exptl.entry_id    8BDX 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              1037.061 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (2S,4R)-N-[(1S)-1-(4-chlorophenyl)-3-[2-[2-[2-[2-[2-[(9S)-7-(4-chlorophenyl)-4,5,13-trimethyl-3-thia-1,8$l^{5},11,12-tetrazatricyclo[8.3.0.0^{2,6}]trideca-2(6),4,7,10,12-pentaen-9-yl]ethanoylamino]ethoxy]ethoxy]ethoxy]ethylamino]-3-oxidanylidene-propyl]-1-[(2R)-3-methyl-2-(3-methyl-1,2-oxazol-5-yl)butanoyl]-4-oxidanyl-pyrrolidine-2-carboxamide 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            8BDX 
_cell.length_a            82.341 
_cell.length_b            82.341 
_cell.length_c            168.96 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8BDX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        145 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? tetrameric 4 author_defined_assembly 1 
? tetrameric 4 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,I 1 1 
E,F,G,H,J,K,L 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 I N N 
? 5 J N N 
#
_chem_comp.formula           'C50 H63 Cl2 N9 O9 S' 
_chem_comp.formula_weight    1037.061 
_chem_comp.id                QIY 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (2S,4R)-N-[(1S)-1-(4-chlorophenyl)-3-[2-[2-[2-[2-[2-[(9S)-7-(4-chlorophenyl)-4,5,13-trimethyl-3-thia-1,8$l^{5},11,12-tetrazatricyclo[8.3.0.0^{2,6}]trideca-2(6),4,7,10,12-pentaen-9-yl]ethanoylamino]ethoxy]ethoxy]ethoxy]ethylamino]-3-oxidanylidene-propyl]-1-[(2R)-3-methyl-2-(3-methyl-1,2-oxazol-5-yl)butanoyl]-4-oxidanyl-pyrrolidine-2-carboxamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O53 C52 QIY sing 277 n n 
C52 C51 QIY sing 278 n n 
C52 C54 QIY sing 279 n n 
C51 C50 QIY sing 280 n n 
CL38 C39 QIY sing 281 n n 
C54 N55 QIY sing 282 n n 
C40 C39 QIY doub 283 n y 
C40 C41 QIY sing 284 n y 
C39 C42 QIY sing 285 n y 
C41 C44 QIY doub 286 n y 
N55 C50 QIY sing 287 n n 
N55 C56 QIY sing 288 n n 
O66 N67 QIY sing 289 n y 
O66 C65 QIY sing 290 n y 
C50 C48 QIY sing 291 n n 
N67 C62 QIY doub 292 n y 
C42 C43 QIY doub 293 n y 
C56 C58 QIY sing 294 n n 
C56 O57 QIY doub 295 n n 
C58 C65 QIY sing 296 n n 
C58 C59 QIY sing 297 n n 
C48 N47 QIY sing 298 n n 
C48 O49 QIY doub 299 n n 
C65 C64 QIY doub 300 n y 
C44 C43 QIY sing 301 n y 
C44 C45 QIY sing 302 n n 
N47 C45 QIY sing 303 n n 
C62 C64 QIY sing 304 n y 
C62 C63 QIY sing 305 n n 
O71 C70 QIY doub 306 n n 
C45 C46 QIY sing 307 n n 
C61 C59 QIY sing 308 n n 
C59 C60 QIY sing 309 n n 
C70 C46 QIY sing 310 n n 
C70 N69 QIY sing 311 n n 
CL30 C29 QIY sing 312 n n 
C68 N69 QIY sing 313 n n 
C68 C1 QIY sing 314 n n 
C29 C28 QIY doub 315 n y 
C29 C31 QIY sing 316 n y 
C1 O2 QIY sing 317 n n 
C28 C27 QIY sing 318 n y 
C23 C22 QIY sing 319 n n 
C31 C32 QIY doub 320 n y 
O2 C37 QIY sing 321 n n 
C27 C26 QIY doub 322 n y 
C21 C20 QIY sing 323 n n 
C32 C26 QIY sing 324 n y 
C22 C20 QIY doub 325 n y 
C22 C24 QIY sing 326 n y 
C26 C25 QIY sing 327 n n 
C37 C36 QIY sing 328 n n 
C20 S19 QIY sing 329 n y 
O35 C36 QIY sing 330 n n 
O35 C34 QIY sing 331 n n 
C33 C34 QIY sing 332 n n 
C33 O3 QIY sing 333 n n 
C24 C25 QIY sing 334 n n 
C24 C18 QIY doub 335 n y 
C25 N11 QIY doub 336 n n 
S19 C18 QIY sing 337 n y 
C18 N17 QIY sing 338 n n 
C4 O3 QIY sing 339 n n 
C4 C5 QIY sing 340 n n 
N11 C10 QIY sing 341 n n 
O8 C7 QIY doub 342 n n 
N17 C12 QIY sing 343 n y 
N17 C15 QIY sing 344 n y 
C10 C12 QIY sing 345 n n 
C10 C9 QIY sing 346 n n 
C5 N6 QIY sing 347 n n 
C7 N6 QIY sing 348 n n 
C7 C9 QIY sing 349 n n 
C16 C15 QIY sing 350 n n 
C12 N13 QIY doub 351 n y 
C15 N14 QIY doub 352 n y 
N13 N14 QIY sing 353 n y 
C1 H1 QIY sing 354 n n 
C1 H2 QIY sing 355 n n 
N6 H3 QIY sing 356 n n 
C9 H4 QIY sing 357 n n 
C9 H5 QIY sing 358 n n 
C10 H6 QIY sing 359 n n 
C16 H7 QIY sing 360 n n 
C16 H8 QIY sing 361 n n 
C16 H9 QIY sing 362 n n 
C21 H10 QIY sing 363 n n 
C21 H11 QIY sing 364 n n 
C21 H12 QIY sing 365 n n 
C27 H13 QIY sing 366 n n 
C31 H14 QIY sing 367 n n 
C32 H15 QIY sing 368 n n 
C33 H16 QIY sing 369 n n 
C33 H17 QIY sing 370 n n 
C34 H18 QIY sing 371 n n 
C34 H19 QIY sing 372 n n 
C4 H20 QIY sing 373 n n 
C4 H21 QIY sing 374 n n 
C5 H22 QIY sing 375 n n 
C5 H23 QIY sing 376 n n 
N11 H24 QIY sing 377 n n 
N11 H25 QIY sing 378 n n 
C23 H26 QIY sing 379 n n 
C23 H27 QIY sing 380 n n 
C23 H28 QIY sing 381 n n 
C28 H30 QIY sing 382 n n 
C36 H31 QIY sing 383 n n 
C36 H32 QIY sing 384 n n 
C37 H33 QIY sing 385 n n 
C37 H34 QIY sing 386 n n 
C40 H35 QIY sing 387 n n 
C41 H36 QIY sing 388 n n 
C42 H37 QIY sing 389 n n 
C43 H38 QIY sing 390 n n 
C45 H39 QIY sing 391 n n 
C46 H40 QIY sing 392 n n 
C46 H41 QIY sing 393 n n 
N47 H42 QIY sing 394 n n 
C50 H43 QIY sing 395 n n 
C51 H44 QIY sing 396 n n 
C51 H45 QIY sing 397 n n 
C52 H46 QIY sing 398 n n 
O53 H47 QIY sing 399 n n 
C54 H48 QIY sing 400 n n 
C54 H49 QIY sing 401 n n 
C58 H50 QIY sing 402 n n 
C59 H51 QIY sing 403 n n 
C60 H52 QIY sing 404 n n 
C60 H53 QIY sing 405 n n 
C60 H54 QIY sing 406 n n 
C61 H55 QIY sing 407 n n 
C61 H56 QIY sing 408 n n 
C61 H57 QIY sing 409 n n 
C63 H58 QIY sing 410 n n 
C63 H59 QIY sing 411 n n 
C63 H60 QIY sing 412 n n 
C64 H61 QIY sing 413 n n 
C68 H62 QIY sing 414 n n 
C68 H63 QIY sing 415 n n 
N69 H64 QIY sing 416 n n 
#
_atom_sites.entry_id                     8BDX 
_atom_sites.fract_transf_matrix[1][1]    0.012145 
_atom_sites.fract_transf_matrix[1][2]    0.007012 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014023 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005919 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 5 QIY D 1 301 301 QIY INH . 
J 5 QIY H 1 301 301 QIY INH . 
K 6 HOH E 1 501 1 HOH HOH . 
L 6 HOH G 1 201 2 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 QIY . . . J 5 22.872 -8.661 -23.21 1 133.32 ? C1 QIY 301 H 1 
HETATM 2 N N6 QIY . . . J 5 17.428 -10.146 -25.944 1 99.45 ? N6 QIY 301 H 1 
HETATM 3 C C7 QIY . . . J 5 17.472 -10.831 -24.804 1 92.22 ? C7 QIY 301 H 1 
HETATM 4 C C9 QIY . . . J 5 17.033 -12.273 -24.862 1 92.05 ? C9 QIY 301 H 1 
HETATM 5 C C10 QIY . . . J 5 17.328 -12.991 -23.549 1 90.35 ? C10 QIY 301 H 1 
HETATM 6 C C12 QIY . . . J 5 16.714 -14.352 -23.521 1 86.39 ? C12 QIY 301 H 1 
HETATM 7 C C15 QIY . . . J 5 16.103 -16.33 -22.8 1 88.02 ? C15 QIY 301 H 1 
HETATM 8 C C16 QIY . . . J 5 15.943 -17.531 -21.94 1 84.53 ? C16 QIY 301 H 1 
HETATM 9 C C20 QIY . . . J 5 18.203 -14.384 -18.94 1 83.76 ? C20 QIY 301 H 1 
HETATM 10 C C21 QIY . . . J 5 18.365 -14.519 -17.459 1 83.95 ? C21 QIY 301 H 1 
HETATM 11 C C22 QIY . . . J 5 18.979 -13.691 -19.817 1 84.98 ? C22 QIY 301 H 1 
HETATM 12 C C24 QIY . . . J 5 18.63 -13.968 -21.18 1 90.96 ? C24 QIY 301 H 1 
HETATM 13 C C27 QIY . . . J 5 21.423 -14.746 -21.609 1 90.92 ? C27 QIY 301 H 1 
HETATM 14 C C31 QIY . . . J 5 23.026 -13.007 -23.056 1 96.45 ? C31 QIY 301 H 1 
HETATM 15 C C32 QIY . . . J 5 21.653 -12.843 -23.054 1 93.53 ? C32 QIY 301 H 1 
HETATM 16 C C33 QIY . . . J 5 21.011 -7.952 -26.86 1 129.69 ? C33 QIY 301 H 1 
HETATM 17 C C34 QIY . . . J 5 22.177 -8.37 -27.699 1 134.78 ? C34 QIY 301 H 1 
HETATM 18 O O2 QIY . . . J 5 23.843 -9.324 -24.005 1 134.08 ? O2 QIY 301 H 1 
HETATM 19 O O3 QIY . . . J 5 20.034 -8.991 -26.857 1 123.15 ? O3 QIY 301 H 1 
HETATM 20 C C4 QIY . . . J 5 18.736 -8.552 -27.244 1 109.71 ? C4 QIY 301 H 1 
HETATM 21 C C5 QIY . . . J 5 17.806 -8.748 -26.078 1 101.1 ? C5 QIY 301 H 1 
HETATM 22 O O8 QIY . . . J 5 17.857 -10.324 -23.757 1 107.05 ? O8 QIY 301 H 1 
HETATM 23 N N11 QIY . . . J 5 18.78 -13.072 -23.393 1 92.36 ? N11 QIY 301 H 1 
HETATM 24 N N13 QIY . . . J 5 16.014 -14.908 -24.474 1 82 ? N13 QIY 301 H 1 
HETATM 25 N N14 QIY . . . J 5 15.628 -16.175 -24.009 1 93.02 ? N14 QIY 301 H 1 
HETATM 26 N N17 QIY . . . J 5 16.816 -15.184 -22.42 1 87.05 ? N17 QIY 301 H 1 
HETATM 27 C C18 QIY . . . J 5 17.483 -14.781 -21.271 1 88.97 ? C18 QIY 301 H 1 
HETATM 28 S S19 QIY . . . J 5 16.882 -15.182 -19.719 1 82.75 ? S19 QIY 301 H 1 
HETATM 29 C C23 QIY . . . J 5 20.108 -12.805 -19.37 1 85.93 ? C23 QIY 301 H 1 
HETATM 30 C C25 QIY . . . J 5 19.356 -13.537 -22.343 1 93.38 ? C25 QIY 301 H 1 
HETATM 31 C C26 QIY . . . J 5 20.836 -13.71 -22.333 1 93.09 ? C26 QIY 301 H 1 
HETATM 32 C C28 QIY . . . J 5 22.794 -14.917 -21.61 1 95.71 ? C28 QIY 301 H 1 
HETATM 33 C C29 QIY . . . J 5 23.573 -14.041 -22.332 1 100.17 ? C29 QIY 301 H 1 
HETATM 34 CL CL30 QIY . . . J 5 25.296 -14.259 -22.347 1 111.43 ? CL30 QIY 301 H 1 
HETATM 35 O O35 QIY . . . J 5 22.561 -9.713 -27.4 1 152.39 ? O35 QIY 301 H 1 
HETATM 36 C C36 QIY . . . J 5 22.739 -10.002 -26.013 1 145.32 ? C36 QIY 301 H 1 
HETATM 37 C C37 QIY . . . J 5 23.717 -9.047 -25.392 1 139.77 ? C37 QIY 301 H 1 
HETATM 38 CL CL38 QIY . . . J 5 16.672 -1.872 -19.828 1 159.18 ? CL38 QIY 301 H 1 
HETATM 39 C C39 QIY . . . J 5 17.845 -3.163 -19.956 1 121.69 ? C39 QIY 301 H 1 
HETATM 40 C C40 QIY . . . J 5 18.189 -3.859 -18.82 1 125.66 ? C40 QIY 301 H 1 
HETATM 41 C C41 QIY . . . J 5 19.125 -4.88 -18.9 1 116.57 ? C41 QIY 301 H 1 
HETATM 42 C C42 QIY . . . J 5 18.421 -3.471 -21.168 1 111.03 ? C42 QIY 301 H 1 
HETATM 43 C C43 QIY . . . J 5 19.367 -4.498 -21.232 1 105.33 ? C43 QIY 301 H 1 
HETATM 44 C C44 QIY . . . J 5 19.718 -5.225 -20.102 1 110.94 ? C44 QIY 301 H 1 
HETATM 45 C C45 QIY . . . J 5 20.77 -6.324 -20.146 1 112.73 ? C45 QIY 301 H 1 
HETATM 46 C C46 QIY . . . J 5 20.165 -7.717 -19.903 1 116.75 ? C46 QIY 301 H 1 
HETATM 47 N N47 QIY . . . J 5 21.8 -6.111 -19.132 1 105.16 ? N47 QIY 301 H 1 
HETATM 48 C C48 QIY . . . J 5 22.964 -5.497 -19.348 1 102.13 ? C48 QIY 301 H 1 
HETATM 49 O O49 QIY . . . J 5 23.242 -4.856 -20.358 1 100.04 ? O49 QIY 301 H 1 
HETATM 50 C C50 QIY . . . J 5 23.975 -5.649 -18.219 1 108.07 ? C50 QIY 301 H 1 
HETATM 51 C C51 QIY . . . J 5 24.057 -4.386 -17.348 1 110.82 ? C51 QIY 301 H 1 
HETATM 52 C C52 QIY . . . J 5 25.483 -4.42 -16.829 1 110.45 ? C52 QIY 301 H 1 
HETATM 53 O O53 QIY . . . J 5 25.58 -5.415 -15.819 1 106.43 ? O53 QIY 301 H 1 
HETATM 54 C C54 QIY . . . J 5 26.271 -4.838 -18.063 1 113.44 ? C54 QIY 301 H 1 
HETATM 55 N N55 QIY . . . J 5 25.342 -5.774 -18.716 1 107.92 ? N55 QIY 301 H 1 
HETATM 56 C C56 QIY . . . J 5 25.547 -6.708 -19.64 1 105.28 ? C56 QIY 301 H 1 
HETATM 57 O O57 QIY . . . J 5 24.614 -7.401 -19.991 1 110.22 ? O57 QIY 301 H 1 
HETATM 58 C C58 QIY . . . J 5 26.944 -6.909 -20.213 1 109.47 ? C58 QIY 301 H 1 
HETATM 59 C C59 QIY . . . J 5 26.891 -6.751 -21.731 1 108.49 ? C59 QIY 301 H 1 
HETATM 60 C C60 QIY . . . J 5 28.27 -7.029 -22.312 1 110.4 ? C60 QIY 301 H 1 
HETATM 61 C C61 QIY . . . J 5 26.369 -5.37 -22.121 1 101.14 ? C61 QIY 301 H 1 
HETATM 62 C C62 QIY . . . J 5 27.719 -10.403 -19.397 1 112.6 ? C62 QIY 301 H 1 
HETATM 63 C C63 QIY . . . J 5 27.596 -11.896 -19.388 1 108.15 ? C63 QIY 301 H 1 
HETATM 64 C C64 QIY . . . J 5 26.916 -9.493 -20.117 1 107.32 ? C64 QIY 301 H 1 
HETATM 65 C C65 QIY . . . J 5 27.396 -8.279 -19.815 1 108.67 ? C65 QIY 301 H 1 
HETATM 66 O O66 QIY . . . J 5 28.422 -8.4 -18.946 1 109.83 ? O66 QIY 301 H 1 
HETATM 67 N N67 QIY . . . J 5 28.626 -9.783 -18.691 1 119.28 ? N67 QIY 301 H 1 
HETATM 68 C C68 QIY . . . J 5 22.636 -9.504 -21.984 1 132.24 ? C68 QIY 301 H 1 
HETATM 69 N N69 QIY . . . J 5 21.335 -9.223 -21.403 1 135.85 ? N69 QIY 301 H 1 
HETATM 70 C C70 QIY . . . J 5 21.157 -8.839 -20.134 1 126.39 ? C70 QIY 301 H 1 
HETATM 71 O O71 QIY . . . J 5 21.768 -9.374 -19.207 1 112.79 ? O71 QIY 301 H 1 
#
_model_server_stats.io_time_ms              83 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    28 
_model_server_stats.query_time_ms           337 
_model_server_stats.encode_time_ms          12 
_model_server_stats.element_count           71 
#