data_8BE9 # _model_server_result.job_id TybvkSMAtjUQdHOcZV7d5A _model_server_result.datetime_utc '2024-11-02 02:27:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8be9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"R","auth_seq_id":1106}' # _entry.id 8BE9 # _exptl.entry_id 8BE9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 46.025 _entity.id 5 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description 'FORMIC ACID' _entity.pdbx_number_of_molecules 14 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8BE9 _cell.length_a 150.41 _cell.length_b 150.41 _cell.length_c 200.98 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8BE9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall 'I 4 2' _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 G N N ? 5 H N N ? 5 I N N ? 5 J N N ? 5 K N N ? 5 L N N ? 5 M N N ? 5 N N N ? 5 O N N ? 5 P N N ? 5 Q N N ? 5 R N N ? 5 S N N ? 5 T N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C C LYS 1 P LYS 1 1_555 C N 7XC 2 P 7XC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.512 ? covale ? covale2 C NZ LYS 1 P LYS 1 1_555 C CG XSN 9 P XSN 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.498 ? covale ? covale3 C C 7XC 2 P 7XC 2 1_555 C N HIS 3 P HIS 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.46 ? covale ? covale4 C C ALA 8 P ALA 8 1_555 C N XSN 9 P XSN 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.492 ? # _chem_comp.formula 'C H2 O2' _chem_comp.formula_weight 46.025 _chem_comp.id FMT _chem_comp.mon_nstd_flag . _chem_comp.name 'FORMIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O1 FMT doub 113 n n C O2 FMT sing 114 n n C H FMT sing 115 n n O2 HO2 FMT sing 116 n n # _atom_sites.entry_id 8BE9 _atom_sites.fract_transf_matrix[1][1] 0.006648 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006648 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004976 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 CL R 1 201 1 CL CL . E 4 CL R 1 202 2 CL CL . F 4 CL R 1 203 3 CL CL . G 5 FMT R 1 204 1 FMT FMT . H 5 FMT R 1 205 2 FMT FMT . I 5 FMT R 1 206 3 FMT FMT . J 5 FMT R 1 207 4 FMT FMT . K 5 FMT R 1 208 5 FMT FMT . L 5 FMT R 1 209 6 FMT FMT . M 5 FMT S 1 1101 7 FMT FMT . N 5 FMT S 1 1102 8 FMT FMT . O 5 FMT S 1 1103 9 FMT FMT . P 5 FMT S 1 1104 10 FMT FMT . Q 5 FMT S 1 1105 11 FMT FMT . R 5 FMT S 1 1106 12 FMT FMT . S 5 FMT S 1 1107 13 FMT FMT . T 5 FMT S 1 1108 14 FMT FMT . U 6 HOH R 1 301 115 HOH HOH . U 6 HOH R 2 302 7 HOH HOH . U 6 HOH R 3 303 35 HOH HOH . U 6 HOH R 4 304 101 HOH HOH . U 6 HOH R 5 305 37 HOH HOH . U 6 HOH R 6 306 67 HOH HOH . U 6 HOH R 7 307 70 HOH HOH . U 6 HOH R 8 308 83 HOH HOH . U 6 HOH R 9 309 151 HOH HOH . U 6 HOH R 10 310 127 HOH HOH . U 6 HOH R 11 311 129 HOH HOH . U 6 HOH R 12 312 4 HOH HOH . U 6 HOH R 13 313 74 HOH HOH . U 6 HOH R 14 314 117 HOH HOH . U 6 HOH R 15 315 73 HOH HOH . U 6 HOH R 16 316 32 HOH HOH . U 6 HOH R 17 317 69 HOH HOH . U 6 HOH R 18 318 38 HOH HOH . U 6 HOH R 19 319 9 HOH HOH . U 6 HOH R 20 320 16 HOH HOH . U 6 HOH R 21 321 41 HOH HOH . U 6 HOH R 22 322 76 HOH HOH . U 6 HOH R 23 323 87 HOH HOH . U 6 HOH R 24 324 26 HOH HOH . U 6 HOH R 25 325 8 HOH HOH . U 6 HOH R 26 326 82 HOH HOH . U 6 HOH R 27 327 143 HOH HOH . U 6 HOH R 28 328 81 HOH HOH . U 6 HOH R 29 329 75 HOH HOH . U 6 HOH R 30 330 88 HOH HOH . U 6 HOH R 31 331 85 HOH HOH . U 6 HOH R 32 332 91 HOH HOH . U 6 HOH R 33 333 110 HOH HOH . U 6 HOH R 34 334 100 HOH HOH . U 6 HOH R 35 335 103 HOH HOH . U 6 HOH R 36 336 154 HOH HOH . U 6 HOH R 37 337 39 HOH HOH . V 6 HOH S 1 1201 121 HOH HOH . V 6 HOH S 2 1202 114 HOH HOH . V 6 HOH S 3 1203 93 HOH HOH . V 6 HOH S 4 1204 89 HOH HOH . V 6 HOH S 5 1205 66 HOH HOH . V 6 HOH S 6 1206 116 HOH HOH . V 6 HOH S 7 1207 80 HOH HOH . V 6 HOH S 8 1208 155 HOH HOH . V 6 HOH S 9 1209 59 HOH HOH . V 6 HOH S 10 1210 72 HOH HOH . V 6 HOH S 11 1211 104 HOH HOH . V 6 HOH S 12 1212 51 HOH HOH . V 6 HOH S 13 1213 71 HOH HOH . V 6 HOH S 14 1214 29 HOH HOH . V 6 HOH S 15 1215 23 HOH HOH . V 6 HOH S 16 1216 68 HOH HOH . V 6 HOH S 17 1217 111 HOH HOH . V 6 HOH S 18 1218 84 HOH HOH . V 6 HOH S 19 1219 105 HOH HOH . V 6 HOH S 20 1220 106 HOH HOH . V 6 HOH S 21 1221 78 HOH HOH . V 6 HOH S 22 1222 34 HOH HOH . V 6 HOH S 23 1223 17 HOH HOH . V 6 HOH S 24 1224 86 HOH HOH . V 6 HOH S 25 1225 109 HOH HOH . V 6 HOH S 26 1226 53 HOH HOH . V 6 HOH S 27 1227 138 HOH HOH . V 6 HOH S 28 1228 119 HOH HOH . V 6 HOH S 29 1229 137 HOH HOH . V 6 HOH S 30 1230 77 HOH HOH . V 6 HOH S 31 1231 134 HOH HOH . V 6 HOH S 32 1232 20 HOH HOH . V 6 HOH S 33 1233 90 HOH HOH . V 6 HOH S 34 1234 120 HOH HOH . V 6 HOH S 35 1235 79 HOH HOH . V 6 HOH S 36 1236 2 HOH HOH . V 6 HOH S 37 1237 99 HOH HOH . V 6 HOH S 38 1238 97 HOH HOH . V 6 HOH S 39 1239 43 HOH HOH . V 6 HOH S 40 1240 96 HOH HOH . V 6 HOH S 41 1241 10 HOH HOH . V 6 HOH S 42 1242 107 HOH HOH . V 6 HOH S 43 1243 122 HOH HOH . V 6 HOH S 44 1244 62 HOH HOH . V 6 HOH S 45 1245 56 HOH HOH . V 6 HOH S 46 1246 31 HOH HOH . V 6 HOH S 47 1247 44 HOH HOH . V 6 HOH S 48 1248 21 HOH HOH . V 6 HOH S 49 1249 139 HOH HOH . V 6 HOH S 50 1250 141 HOH HOH . V 6 HOH S 51 1251 61 HOH HOH . V 6 HOH S 52 1252 15 HOH HOH . V 6 HOH S 53 1253 158 HOH HOH . V 6 HOH S 54 1254 98 HOH HOH . V 6 HOH S 55 1255 128 HOH HOH . V 6 HOH S 56 1256 57 HOH HOH . V 6 HOH S 57 1257 94 HOH HOH . V 6 HOH S 58 1258 13 HOH HOH . V 6 HOH S 59 1259 14 HOH HOH . V 6 HOH S 60 1260 92 HOH HOH . V 6 HOH S 61 1261 52 HOH HOH . V 6 HOH S 62 1262 47 HOH HOH . V 6 HOH S 63 1263 63 HOH HOH . V 6 HOH S 64 1264 54 HOH HOH . V 6 HOH S 65 1265 157 HOH HOH . V 6 HOH S 66 1266 140 HOH HOH . V 6 HOH S 67 1267 142 HOH HOH . V 6 HOH S 68 1268 12 HOH HOH . V 6 HOH S 69 1269 11 HOH HOH . V 6 HOH S 70 1270 18 HOH HOH . V 6 HOH S 71 1271 136 HOH HOH . V 6 HOH S 72 1272 95 HOH HOH . V 6 HOH S 73 1273 58 HOH HOH . V 6 HOH S 74 1274 60 HOH HOH . V 6 HOH S 75 1275 45 HOH HOH . V 6 HOH S 76 1276 152 HOH HOH . V 6 HOH S 77 1277 55 HOH HOH . V 6 HOH S 78 1278 123 HOH HOH . V 6 HOH S 79 1279 65 HOH HOH . V 6 HOH S 80 1280 118 HOH HOH . V 6 HOH S 81 1281 28 HOH HOH . V 6 HOH S 82 1282 49 HOH HOH . V 6 HOH S 83 1283 48 HOH HOH . V 6 HOH S 84 1284 22 HOH HOH . V 6 HOH S 85 1285 50 HOH HOH . W 6 HOH P 1 101 108 HOH HOH . W 6 HOH P 2 102 30 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C FMT . . . R 5 -38.765 39.038 -13.107 1 77.16 ? C FMT 1106 S 1 HETATM 2 O O1 FMT . . . R 5 -38.191 40.14 -13.16 1 76.65 -1 O1 FMT 1106 S 1 HETATM 3 O O2 FMT . . . R 5 -38.903 38.411 -12.046 1 77.82 ? O2 FMT 1106 S 1 HETATM 4 H H FMT . . . R 5 -39.083 38.593 -14.051 1 92.66 ? H FMT 1106 S 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 4 #