data_8BEB
#
_model_server_result.job_id            0mVzAyrGgroQeQi5qcfusA 
_model_server_result.datetime_utc      '2025-01-10 13:53:09' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8beb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":301}' 
#
_entry.id    8BEB 
#
_exptl.entry_id    8BEB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              993.634 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (2~{S},4~{R})-~{N}-[(1~{S})-3-[4-[2-[(9~{S})-7-(4-chlorophenyl)-4,5,13-trimethyl-3-thia-1,8,11,12-tetrazatricyclo[8.3.0.0^{2,6}]trideca-2(6),4,7,10,12-pentaen-9-yl]ethanoylamino]butylamino]-1-[4-(4-methyl-1,3-thiazol-5-yl)phenyl]-3-oxidanylidene-propyl]-1-[(2~{R})-3-methyl-2-(3-methyl-1,2-oxazol-5-yl)butanoyl]-4-oxidanyl-pyrrolidine-2-carboxamide 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            8BEB 
_cell.length_a            79.754 
_cell.length_b            79.754 
_cell.length_c            184.93 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8BEB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      6 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C50 H57 Cl N10 O6 S2' 
_chem_comp.formula_weight    993.634 
_chem_comp.id                QIK 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (2~{S},4~{R})-~{N}-[(1~{S})-3-[4-[2-[(9~{S})-7-(4-chlorophenyl)-4,5,13-trimethyl-3-thia-1,8,11,12-tetrazatricyclo[8.3.0.0^{2,6}]trideca-2(6),4,7,10,12-pentaen-9-yl]ethanoylamino]butylamino]-1-[4-(4-methyl-1,3-thiazol-5-yl)phenyl]-3-oxidanylidene-propyl]-1-[(2~{R})-3-methyl-2-(3-methyl-1,2-oxazol-5-yl)butanoyl]-4-oxidanyl-pyrrolidine-2-carboxamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N8 N7 QIK sing 277 n y 
N8 C32 QIK doub 278 n y 
N7 C31 QIK doub 279 n y 
N5 C27 QIK sing 280 n n 
N5 C28 QIK sing 281 n n 
C29 C28 QIK sing 282 n n 
C29 C30 QIK sing 283 n n 
C27 C16 QIK sing 284 n n 
C32 C33 QIK sing 285 n n 
C32 N9 QIK sing 286 n y 
C16 C15 QIK sing 287 n n 
C28 O5 QIK doub 288 n n 
C31 C30 QIK sing 289 n n 
C31 N9 QIK sing 290 n y 
C30 N6 QIK sing 291 n n 
N9 C34 QIK sing 292 n n 
C15 C14 QIK sing 293 n n 
C34 S2 QIK sing 294 n y 
C34 C39 QIK doub 295 n y 
N6 C40 QIK doub 296 n n 
S2 C35 QIK sing 297 n y 
C14 N2 QIK sing 298 n n 
C40 C39 QIK sing 299 n n 
C40 C41 QIK sing 300 n n 
C39 C37 QIK sing 301 n y 
C35 C37 QIK doub 302 n y 
C35 C36 QIK sing 303 n n 
N2 C13 QIK sing 304 n n 
C37 C38 QIK sing 305 n n 
C41 C42 QIK doub 306 n y 
C41 C46 QIK sing 307 n y 
C42 C43 QIK sing 308 n y 
C13 O1 QIK doub 309 n n 
C13 C12 QIK sing 310 n n 
C46 C45 QIK doub 311 n y 
C43 C44 QIK doub 312 n y 
C1 C2 QIK sing 313 n n 
C12 C11 QIK sing 314 n n 
N1 C2 QIK sing 315 n y 
N1 C3 QIK doub 316 n y 
C2 C4 QIK doub 317 n y 
C6 C7 QIK doub 318 n y 
C6 C5 QIK sing 319 n y 
C45 C44 QIK sing 320 n y 
C44 CL1 QIK sing 321 n n 
C7 C10 QIK sing 322 n y 
C3 S1 QIK sing 323 n y 
C4 C5 QIK sing 324 n n 
C4 S1 QIK sing 325 n y 
C5 C8 QIK doub 326 n y 
C10 C11 QIK sing 327 n n 
C10 C9 QIK doub 328 n y 
C11 N3 QIK sing 329 n n 
C8 C9 QIK sing 330 n y 
C26 C24 QIK sing 331 n n 
C24 C25 QIK sing 332 n n 
C24 C23 QIK sing 333 n n 
O4 C22 QIK doub 334 n n 
N3 C17 QIK sing 335 n n 
C49 C47 QIK sing 336 n y 
C49 C50 QIK doub 337 n y 
C48 C47 QIK sing 338 n n 
O2 C17 QIK doub 339 n n 
C47 N10 QIK doub 340 n y 
C17 C18 QIK sing 341 n n 
C22 C23 QIK sing 342 n n 
C22 N4 QIK sing 343 n n 
C50 C23 QIK sing 344 n n 
C50 O6 QIK sing 345 n y 
N10 O6 QIK sing 346 n y 
C18 N4 QIK sing 347 n n 
C18 C19 QIK sing 348 n n 
N4 C21 QIK sing 349 n n 
C21 C20 QIK sing 350 n n 
C19 C20 QIK sing 351 n n 
C20 O3 QIK sing 352 n n 
C1 H1 QIK sing 353 n n 
C1 H2 QIK sing 354 n n 
C1 H3 QIK sing 355 n n 
C3 H4 QIK sing 356 n n 
C6 H5 QIK sing 357 n n 
C7 H6 QIK sing 358 n n 
C8 H7 QIK sing 359 n n 
C9 H8 QIK sing 360 n n 
C11 H9 QIK sing 361 n n 
C12 H10 QIK sing 362 n n 
C12 H11 QIK sing 363 n n 
N2 H12 QIK sing 364 n n 
C14 H13 QIK sing 365 n n 
C14 H14 QIK sing 366 n n 
C15 H15 QIK sing 367 n n 
C15 H16 QIK sing 368 n n 
C16 H17 QIK sing 369 n n 
C16 H18 QIK sing 370 n n 
N3 H19 QIK sing 371 n n 
C18 H20 QIK sing 372 n n 
C19 H21 QIK sing 373 n n 
C19 H22 QIK sing 374 n n 
C20 H23 QIK sing 375 n n 
O3 H24 QIK sing 376 n n 
C21 H25 QIK sing 377 n n 
C21 H26 QIK sing 378 n n 
C23 H27 QIK sing 379 n n 
C24 H28 QIK sing 380 n n 
C25 H29 QIK sing 381 n n 
C25 H30 QIK sing 382 n n 
C25 H31 QIK sing 383 n n 
C26 H32 QIK sing 384 n n 
C26 H33 QIK sing 385 n n 
C26 H34 QIK sing 386 n n 
C27 H35 QIK sing 387 n n 
C27 H36 QIK sing 388 n n 
N5 H37 QIK sing 389 n n 
C29 H38 QIK sing 390 n n 
C29 H39 QIK sing 391 n n 
C30 H40 QIK sing 392 n n 
C33 H43 QIK sing 393 n n 
C33 H44 QIK sing 394 n n 
C33 H45 QIK sing 395 n n 
C36 H48 QIK sing 396 n n 
C36 H49 QIK sing 397 n n 
C36 H50 QIK sing 398 n n 
C38 H51 QIK sing 399 n n 
C38 H52 QIK sing 400 n n 
C38 H53 QIK sing 401 n n 
C42 H55 QIK sing 402 n n 
C43 H56 QIK sing 403 n n 
C45 H57 QIK sing 404 n n 
C46 H58 QIK sing 405 n n 
C48 H59 QIK sing 406 n n 
C48 H60 QIK sing 407 n n 
C48 H61 QIK sing 408 n n 
C49 H62 QIK sing 409 n n 
#
_atom_sites.entry_id                     8BEB 
_atom_sites.fract_transf_matrix[1][1]    0.012539 
_atom_sites.fract_transf_matrix[1][2]    0.007239 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014478 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005407 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 5 SO4 A 1 201 1 SO4 SO4 . 
F 6 QIK C 1 301 201 QIK UNL . 
G 7 HOH A 1 301 1 HOH HOH . 
G 7 HOH A 2 302 2 HOH HOH . 
H 7 HOH C 1 401 3 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 QIK . . . F 6 7.948 1.9 -17.347 1 124.8 ? C1 QIK 301 C 1 
HETATM 2 C C2 QIK . . . F 6 6.52 1.659 -16.95 1 137.05 ? C2 QIK 301 C 1 
HETATM 3 N N1 QIK . . . F 6 5.642 2.72 -16.977 1 144.08 ? N1 QIK 301 C 1 
HETATM 4 C C3 QIK . . . F 6 4.435 2.318 -16.712 1 144.5 ? C3 QIK 301 C 1 
HETATM 5 S S1 QIK . . . F 6 4.282 0.685 -16.21 1 143.36 ? S1 QIK 301 C 1 
HETATM 6 C C4 QIK . . . F 6 5.966 0.464 -16.547 1 137.48 ? C4 QIK 301 C 1 
HETATM 7 C C5 QIK . . . F 6 6.626 -0.85 -16.388 1 125.77 ? C5 QIK 301 C 1 
HETATM 8 C C6 QIK . . . F 6 6.062 -2.021 -16.895 1 116.82 ? C6 QIK 301 C 1 
HETATM 9 C C7 QIK . . . F 6 6.702 -3.24 -16.743 1 113.84 ? C7 QIK 301 C 1 
HETATM 10 C C8 QIK . . . F 6 7.852 -0.941 -15.734 1 120 ? C8 QIK 301 C 1 
HETATM 11 C C9 QIK . . . F 6 8.483 -2.16 -15.582 1 116.51 ? C9 QIK 301 C 1 
HETATM 12 C C10 QIK . . . F 6 7.911 -3.328 -16.063 1 112.75 ? C10 QIK 301 C 1 
HETATM 13 C C11 QIK . . . F 6 8.667 -4.642 -15.927 1 107.95 ? C11 QIK 301 C 1 
HETATM 14 C C12 QIK . . . F 6 8.727 -5.363 -17.282 1 107.97 ? C12 QIK 301 C 1 
HETATM 15 C C13 QIK . . . F 6 9.474 -4.61 -18.362 1 109.03 ? C13 QIK 301 C 1 
HETATM 16 O O1 QIK . . . F 6 9.673 -3.398 -18.285 1 105.57 ? O1 QIK 301 C 1 
HETATM 17 N N2 QIK . . . F 6 9.924 -5.327 -19.396 1 114.95 ? N2 QIK 301 C 1 
HETATM 18 C C14 QIK . . . F 6 10.389 -4.771 -20.661 1 115.83 ? C14 QIK 301 C 1 
HETATM 19 C C15 QIK . . . F 6 9.284 -4.731 -21.707 1 112.61 ? C15 QIK 301 C 1 
HETATM 20 C C16 QIK . . . F 6 9.659 -5.414 -23.018 1 104.4 ? C16 QIK 301 C 1 
HETATM 21 N N3 QIK . . . F 6 8.168 -5.545 -14.879 1 98.81 ? N3 QIK 301 C 1 
HETATM 22 C C17 QIK . . . F 6 9.016 -6.397 -14.273 1 90.09 ? C17 QIK 301 C 1 
HETATM 23 O O2 QIK . . . F 6 10.157 -6.586 -14.698 1 89.48 ? O2 QIK 301 C 1 
HETATM 24 C C18 QIK . . . F 6 8.501 -7.139 -13.036 1 83.65 ? C18 QIK 301 C 1 
HETATM 25 C C19 QIK . . . F 6 9.095 -6.586 -11.73 1 79.47 ? C19 QIK 301 C 1 
HETATM 26 C C20 QIK . . . F 6 9.28 -7.798 -10.826 1 76.3 ? C20 QIK 301 C 1 
HETATM 27 O O3 QIK . . . F 6 8.054 -8.18 -10.218 1 73.6 ? O3 QIK 301 C 1 
HETATM 28 C C21 QIK . . . F 6 9.7 -8.883 -11.797 1 75.91 ? C21 QIK 301 C 1 
HETATM 29 N N4 QIK . . . F 6 8.925 -8.543 -13.003 1 81.22 ? N4 QIK 301 C 1 
HETATM 30 C C22 QIK . . . F 6 8.587 -9.379 -14.005 1 82.87 ? C22 QIK 301 C 1 
HETATM 31 O O4 QIK . . . F 6 7.901 -8.993 -14.938 1 81.49 ? O4 QIK 301 C 1 
HETATM 32 C C23 QIK . . . F 6 9.09 -10.821 -13.927 1 80.91 ? C23 QIK 301 C 1 
HETATM 33 C C24 QIK . . . F 6 10.142 -11.135 -15.008 1 79.26 ? C24 QIK 301 C 1 
HETATM 34 C C25 QIK . . . F 6 10.975 -12.331 -14.566 1 78.8 ? C25 QIK 301 C 1 
HETATM 35 C C26 QIK . . . F 6 11.059 -9.956 -15.322 1 77.3 ? C26 QIK 301 C 1 
HETATM 36 C C27 QIK . . . F 6 9.291 -6.888 -23.057 1 92.58 ? C27 QIK 301 C 1 
HETATM 37 N N5 QIK . . . F 6 10.342 -7.676 -23.676 1 86.19 ? N5 QIK 301 C 1 
HETATM 38 C C28 QIK . . . F 6 11.283 -8.336 -22.996 1 81.96 ? C28 QIK 301 C 1 
HETATM 39 O O5 QIK . . . F 6 10.998 -9.083 -22.063 1 84.54 ? O5 QIK 301 C 1 
HETATM 40 C C29 QIK . . . F 6 12.729 -8.036 -23.378 1 76.52 ? C29 QIK 301 C 1 
HETATM 41 C C30 QIK . . . F 6 13.759 -8.751 -22.504 1 73.28 ? C30 QIK 301 C 1 
HETATM 42 N N6 QIK . . . F 6 13.567 -8.251 -21.132 1 71.28 ? N6 QIK 301 C 1 
HETATM 43 C C31 QIK . . . F 6 15.176 -8.568 -22.972 1 69.9 ? C31 QIK 301 C 1 
HETATM 44 N N7 QIK . . . F 6 15.598 -7.896 -24.018 1 66.45 ? N7 QIK 301 C 1 
HETATM 45 N N8 QIK . . . F 6 16.995 -8.013 -24.065 1 62.71 ? N8 QIK 301 C 1 
HETATM 46 C C32 QIK . . . F 6 17.36 -8.747 -23.047 1 63.31 ? C32 QIK 301 C 1 
HETATM 47 C C33 QIK . . . F 6 18.743 -9.129 -22.68 1 62.94 ? C33 QIK 301 C 1 
HETATM 48 N N9 QIK . . . F 6 16.255 -9.143 -22.303 1 66.73 ? N9 QIK 301 C 1 
HETATM 49 C C34 QIK . . . F 6 16.106 -9.925 -21.167 1 66.18 ? C34 QIK 301 C 1 
HETATM 50 S S2 QIK . . . F 6 16.917 -11.436 -21.017 1 65.03 ? S2 QIK 301 C 1 
HETATM 51 C C35 QIK . . . F 6 16.315 -11.627 -19.413 1 65.72 ? C35 QIK 301 C 1 
HETATM 52 C C36 QIK . . . F 6 16.959 -12.681 -18.56 1 66.25 ? C36 QIK 301 C 1 
HETATM 53 C C37 QIK . . . F 6 15.293 -10.758 -19.137 1 65.47 ? C37 QIK 301 C 1 
HETATM 54 C C38 QIK . . . F 6 14.376 -10.904 -17.952 1 65.08 ? C38 QIK 301 C 1 
HETATM 55 C C39 QIK . . . F 6 15.217 -9.69 -20.097 1 67.08 ? C39 QIK 301 C 1 
HETATM 56 C C40 QIK . . . F 6 14.322 -8.53 -20.128 1 70.21 ? C40 QIK 301 C 1 
HETATM 57 C C41 QIK . . . F 6 14.258 -7.593 -18.969 1 72.02 ? C41 QIK 301 C 1 
HETATM 58 C C42 QIK . . . F 6 13.243 -6.639 -18.91 1 74.14 ? C42 QIK 301 C 1 
HETATM 59 C C43 QIK . . . F 6 13.159 -5.753 -17.849 1 76.04 ? C43 QIK 301 C 1 
HETATM 60 C C44 QIK . . . F 6 14.098 -5.819 -16.843 1 76.12 ? C44 QIK 301 C 1 
HETATM 61 CL CL1 QIK . . . F 6 13.989 -4.706 -15.504 1 79.51 ? CL1 QIK 301 C 1 
HETATM 62 C C45 QIK . . . F 6 15.12 -6.744 -16.879 1 73.35 ? C45 QIK 301 C 1 
HETATM 63 C C46 QIK . . . F 6 15.199 -7.628 -17.943 1 72.01 ? C46 QIK 301 C 1 
HETATM 64 C C47 QIK . . . F 6 6.083 -12.929 -14.289 1 76.68 ? C47 QIK 301 C 1 
HETATM 65 C C48 QIK . . . F 6 4.855 -13.552 -14.875 1 77.68 ? C48 QIK 301 C 1 
HETATM 66 C C49 QIK . . . F 6 6.935 -11.963 -14.877 1 76.39 ? C49 QIK 301 C 1 
HETATM 67 C C50 QIK . . . F 6 7.901 -11.739 -13.97 1 78.88 ? C50 QIK 301 C 1 
HETATM 68 O O6 QIK . . . F 6 7.672 -12.501 -12.879 1 76.67 ? O6 QIK 301 C 1 
HETATM 69 N N10 QIK . . . F 6 6.493 -13.259 -13.102 1 76.84 ? N10 QIK 301 C 1 
#
_model_server_stats.io_time_ms              72 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           327 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           69 
#