data_8BEM
#
_model_server_result.job_id            a10rGuOzPrJHu0-nOmGYAQ 
_model_server_result.datetime_utc      '2024-10-10 19:23:18' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8bem 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":401}' 
#
_entry.id    8BEM 
#
_exptl.entry_id    8BEM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              454.863 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            TIVOZANIB 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          95.32 
_cell.angle_gamma         90 
_cell.entry_id            8BEM 
_cell.length_a            58.012 
_cell.length_b            107.28 
_cell.length_c            129.4 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8BEM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 software_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,F,J,K,L,O 1 1 
B,C,G,H,I,M,N 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 G N N 
? 2 H N N 
? 2 J N N 
#
_chem_comp.formula           'C22 H19 Cl N4 O5' 
_chem_comp.formula_weight    454.863 
_chem_comp.id                AV9 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              TIVOZANIB 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     1-{2-chloro-4-[(6,7-dimethoxyquinolin-4-yl)oxy]phenyl}-3-[(3E)-5-methylisoxazol-3(2H)-ylidene]urea 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 AV9 doub 70 n y 
C1 C6 AV9 sing 71 n y 
C1 O34 AV9 sing 72 n n 
C2 C3 AV9 sing 73 n y 
C3 C4 AV9 sing 74 n y 
C3 N7 AV9 doub 75 n y 
C4 C5 AV9 sing 76 n y 
C4 C10 AV9 doub 77 n y 
C5 C6 AV9 doub 78 n y 
C6 O33 AV9 sing 79 n n 
N7 C8 AV9 sing 80 n y 
C8 C9 AV9 doub 81 n y 
C9 C10 AV9 sing 82 n y 
C10 O11 AV9 sing 83 n n 
O11 C12 AV9 sing 84 n n 
C12 C13 AV9 sing 85 n y 
C12 C17 AV9 doub 86 n y 
C13 C11 AV9 doub 87 n y 
C15 C16 AV9 doub 88 n y 
C15 N28 AV9 sing 89 n n 
C15 C11 AV9 sing 90 n y 
C16 C17 AV9 sing 91 n y 
O25 C30 AV9 sing 92 n n 
O25 N21 AV9 sing 93 n n 
N28 C35 AV9 sing 94 n n 
O33 C49 AV9 sing 95 n n 
O34 C53 AV9 sing 96 n n 
C11 CL4 AV9 sing 97 n n 
C35 O36 AV9 doub 98 n n 
C35 N37 AV9 sing 99 n n 
N37 C38 AV9 doub 100 n n 
C38 C43 AV9 sing 101 n n 
C38 N21 AV9 sing 102 n n 
C40 C30 AV9 sing 103 n n 
C43 C30 AV9 doub 104 n n 
C2 H2 AV9 sing 105 n n 
C5 H5 AV9 sing 106 n n 
C8 H8 AV9 sing 107 n n 
C9 H9 AV9 sing 108 n n 
C13 H13 AV9 sing 109 n n 
C17 H17 AV9 sing 110 n n 
C16 H16 AV9 sing 111 n n 
N28 H28 AV9 sing 112 n n 
N21 H21 AV9 sing 113 n n 
C49 H491 AV9 sing 114 n n 
C49 H492 AV9 sing 115 n n 
C49 H493 AV9 sing 116 n n 
C53 H531 AV9 sing 117 n n 
C53 H532 AV9 sing 118 n n 
C53 H533 AV9 sing 119 n n 
C43 H43 AV9 sing 120 n n 
C40 H401 AV9 sing 121 n n 
C40 H402 AV9 sing 122 n n 
C40 H403 AV9 sing 123 n n 
#
_atom_sites.entry_id                     8BEM 
_atom_sites.fract_transf_matrix[1][1]    0.017238 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001605 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009321 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007761 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 AV9 A 1 401 1 AV9 AV9 . 
F 3 SO4 A 1 402 2 SO4 SO4 . 
G 2 AV9 B 1 401 1 AV9 AV9 . 
H 2 AV9 D 1 401 1 AV9 AV9 . 
I 3 SO4 D 1 402 1 SO4 SO4 . 
J 2 AV9 G 1 401 1 AV9 AV9 . 
K 3 SO4 G 1 402 3 SO4 SO4 . 
L 4 HOH A 1 501 26 HOH HOH . 
L 4 HOH A 2 502 9 HOH HOH . 
L 4 HOH A 3 503 4 HOH HOH . 
L 4 HOH A 4 504 2 HOH HOH . 
L 4 HOH A 5 505 22 HOH HOH . 
L 4 HOH A 6 506 7 HOH HOH . 
L 4 HOH A 7 507 32 HOH HOH . 
L 4 HOH A 8 508 18 HOH HOH . 
L 4 HOH A 9 509 28 HOH HOH . 
L 4 HOH A 10 510 3 HOH HOH . 
M 4 HOH B 1 501 8 HOH HOH . 
M 4 HOH B 2 502 29 HOH HOH . 
M 4 HOH B 3 503 10 HOH HOH . 
M 4 HOH B 4 504 25 HOH HOH . 
M 4 HOH B 5 505 11 HOH HOH . 
M 4 HOH B 6 506 1 HOH HOH . 
M 4 HOH B 7 507 6 HOH HOH . 
M 4 HOH B 8 508 33 HOH HOH . 
M 4 HOH B 9 509 24 HOH HOH . 
N 4 HOH D 1 501 30 HOH HOH . 
N 4 HOH D 2 502 27 HOH HOH . 
N 4 HOH D 3 503 21 HOH HOH . 
O 4 HOH G 1 501 31 HOH HOH . 
O 4 HOH G 2 502 16 HOH HOH . 
O 4 HOH G 3 503 15 HOH HOH . 
O 4 HOH G 4 504 19 HOH HOH . 
O 4 HOH G 5 505 5 HOH HOH . 
O 4 HOH G 6 506 12 HOH HOH . 
O 4 HOH G 7 507 20 HOH HOH . 
O 4 HOH G 8 508 13 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 AV9 . . . G 2 -9.775 27.283 -52.729 1 51.32 ? C1 AV9 401 B 1 
HETATM 2 C C2 AV9 . . . G 2 -10.093 26.051 -52.239 1 53.29 ? C2 AV9 401 B 1 
HETATM 3 C C3 AV9 . . . G 2 -9.478 24.884 -52.748 1 49.08 ? C3 AV9 401 B 1 
HETATM 4 C C4 AV9 . . . G 2 -8.515 25.005 -53.774 1 45.02 ? C4 AV9 401 B 1 
HETATM 5 C C5 AV9 . . . G 2 -8.188 26.293 -54.269 1 45.87 ? C5 AV9 401 B 1 
HETATM 6 C C6 AV9 . . . G 2 -8.797 27.408 -53.772 1 48.12 ? C6 AV9 401 B 1 
HETATM 7 N N7 AV9 . . . G 2 -9.818 23.67 -52.211 1 47.57 ? N7 AV9 401 B 1 
HETATM 8 C C8 AV9 . . . G 2 -9.228 22.594 -52.686 1 47.83 ? C8 AV9 401 B 1 
HETATM 9 C C9 AV9 . . . G 2 -8.258 22.616 -53.692 1 47.48 ? C9 AV9 401 B 1 
HETATM 10 C C10 AV9 . . . G 2 -7.899 23.812 -54.237 1 50.1 ? C10 AV9 401 B 1 
HETATM 11 O O11 AV9 . . . G 2 -6.966 23.962 -55.261 1 54.67 ? O11 AV9 401 B 1 
HETATM 12 C C12 AV9 . . . G 2 -6.159 22.895 -55.647 1 60.22 ? C12 AV9 401 B 1 
HETATM 13 C C13 AV9 . . . G 2 -6.636 22.033 -56.607 1 58.63 ? C13 AV9 401 B 1 
HETATM 14 C C15 AV9 . . . G 2 -4.583 20.778 -56.509 1 54.62 ? C15 AV9 401 B 1 
HETATM 15 C C16 AV9 . . . G 2 -4.118 21.669 -55.544 1 62.19 ? C16 AV9 401 B 1 
HETATM 16 C C17 AV9 . . . G 2 -4.903 22.723 -55.111 1 61.06 ? C17 AV9 401 B 1 
HETATM 17 O O25 AV9 . . . G 2 -2.894 17.42 -60.309 1 71.99 ? O25 AV9 401 B 1 
HETATM 18 C C11 AV9 . . . G 2 -5.86 20.977 -57.046 1 57.21 ? C11 AV9 401 B 1 
HETATM 19 N N28 AV9 . . . G 2 -3.732 19.725 -56.918 1 58.1 ? N28 AV9 401 B 1 
HETATM 20 O O33 AV9 . . . G 2 -8.578 28.688 -54.191 1 44.84 ? O33 AV9 401 B 1 
HETATM 21 O O34 AV9 . . . G 2 -10.31 28.465 -52.308 1 50.34 ? O34 AV9 401 B 1 
HETATM 22 C C35 AV9 . . . G 2 -3.116 18.756 -56.142 1 57.04 ? C35 AV9 401 B 1 
HETATM 23 O O36 AV9 . . . G 2 -3.248 18.721 -54.918 1 66.79 ? O36 AV9 401 B 1 
HETATM 24 N N37 AV9 . . . G 2 -2.337 17.934 -56.822 1 66.2 ? N37 AV9 401 B 1 
HETATM 25 C C38 AV9 . . . G 2 -2.526 17.569 -58.091 1 80.05 ? C38 AV9 401 B 1 
HETATM 26 C C40 AV9 . . . G 2 -0.925 16.366 -61.157 1 76.01 ? C40 AV9 401 B 1 
HETATM 27 C C30 AV9 . . . G 2 -1.799 16.716 -60.018 1 74.71 ? C30 AV9 401 B 1 
HETATM 28 C C43 AV9 . . . G 2 -1.767 16.527 -58.653 1 78.47 ? C43 AV9 401 B 1 
HETATM 29 N N21 AV9 . . . G 2 -3.353 17.993 -59.054 1 75.02 ? N21 AV9 401 B 1 
HETATM 30 CL CL4 AV9 . . . G 2 -6.533 19.939 -58.273 1 75.5 ? CL4 AV9 401 B 1 
HETATM 31 C C49 AV9 . . . G 2 -7.615 28.897 -55.227 1 48.61 ? C49 AV9 401 B 1 
HETATM 32 C C53 AV9 . . . G 2 -11.239 28.417 -51.22 1 53.61 ? C53 AV9 401 B 1 
#
_model_server_stats.io_time_ms              24 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           255 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           32 
#