data_8BF6 # _model_server_result.job_id 4Mo7AfGQXganEoBNIRENSA _model_server_result.datetime_utc '2024-11-23 20:39:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8bf6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 8BF6 # _exptl.entry_id 8BF6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 418.397 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Azotochelin _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8BF6 _cell.length_a 36.295 _cell.length_b 116.711 _cell.length_c 141.471 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8BF6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 88 A ASP 88 1_555 D NI NI . A NI 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.965 ? metalc ? metalc2 A OD2 ASP 88 A ASP 88 1_555 D NI NI . A NI 303 3_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.983 ? metalc ? metalc3 A OE2 GLU 90 A GLU 90 1_555 F NI NI . A NI 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.94 ? metalc ? metalc4 A OE2 GLU 94 A GLU 94 1_555 F NI NI . A NI 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.87 ? metalc ? metalc5 A OE1 GLU 94 A GLU 94 1_555 F NI NI . A NI 305 3_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc6 A OD1 ASP 98 A ASP 98 1_555 I NI NI . A NI 308 5_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.493 ? metalc ? metalc7 A OE1 GLU 151 A GLU 151 1_555 E NI NI . A NI 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.953 ? metalc ? metalc8 A OE1 GLU 151 A GLU 151 1_555 E NI NI . A NI 304 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? metalc ? metalc9 A OE1 GLU 155 A GLU 155 1_555 E NI NI . A NI 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.904 ? metalc ? metalc10 A OE2 GLU 155 A GLU 155 1_555 E NI NI . A NI 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.91 ? metalc ? metalc11 A OE1 GLU 155 A GLU 155 1_555 E NI NI . A NI 304 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.733 ? metalc ? metalc12 A OE2 GLU 155 A GLU 155 1_555 E NI NI . A NI 304 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.541 ? metalc ? metalc13 A OE1 GLU 211 A GLU 211 1_555 G NI NI . A NI 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.918 ? metalc ? metalc14 A NE2 HIS 215 A HIS 215 1_555 B FE FE . A FE 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? metalc ? metalc15 A OH TYR 276 A TYR 276 1_555 B FE FE . A FE 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? metalc ? metalc16 A NZ LYS 294 A LYS 294 1_555 G NI NI . A NI 306 1_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.784 ? metalc ? metalc17 A OE1 GLU 297 A GLU 297 1_555 G NI NI . A NI 306 1_655 ? ? ? ? ? ? ? ? ? ? ? ? 1.827 ? metalc ? metalc18 A OE2 GLU 297 A GLU 297 1_555 G NI NI . A NI 306 1_655 ? ? ? ? ? ? ? ? ? ? ? ? 1.936 ? metalc ? metalc19 B FE FE . A FE 301 1_555 C OAG 95B . A 95B 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? metalc ? metalc20 B FE FE . A FE 301 1_555 C OAE 95B . A 95B 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.977 ? metalc ? metalc21 B FE FE . A FE 301 1_555 C OAH 95B . A 95B 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? metalc ? metalc22 B FE FE . A FE 301 1_555 C OAF 95B . A 95B 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.957 ? metalc ? metalc23 D NI NI . A NI 303 1_555 H S SO4 . A SO4 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.583 ? metalc ? metalc24 D NI NI . A NI 303 1_555 H O1 SO4 . A SO4 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc25 D NI NI . A NI 303 1_555 H O4 SO4 . A SO4 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? metalc ? metalc26 D NI NI . A NI 303 1_555 H O4 SO4 . A SO4 307 3_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.984 ? metalc ? metalc27 D NI NI . A NI 303 1_555 H S SO4 . A SO4 307 3_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.594 ? metalc ? metalc28 D NI NI . A NI 303 1_555 H O1 SO4 . A SO4 307 3_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? metalc ? metalc29 D NI NI . A NI 303 1_555 J O HOH . A HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.861 ? metalc ? metalc30 D NI NI . A NI 303 1_555 J O HOH . A HOH 401 3_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.91 ? metalc ? metalc31 F NI NI . A NI 305 1_555 H S SO4 . A SO4 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.519 ? metalc ? metalc32 F NI NI . A NI 305 1_555 H O2 SO4 . A SO4 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.963 ? metalc ? metalc33 F NI NI . A NI 305 1_555 H O3 SO4 . A SO4 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.978 ? metalc ? metalc34 F NI NI . A NI 305 1_555 H O3 SO4 . A SO4 307 3_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.788 ? metalc ? metalc35 F NI NI . A NI 305 1_555 H O2 SO4 . A SO4 307 3_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.692 ? metalc ? metalc36 I NI NI . A NI 308 1_555 J O HOH . A HOH 428 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? # _chem_comp.formula 'C20 H22 N2 O8' _chem_comp.formula_weight 418.397 _chem_comp.id 95B _chem_comp.mon_nstd_flag . _chem_comp.name Azotochelin _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OXT C 95B doub 1 n n O C 95B sing 2 n n C CA 95B sing 3 n n CAJ CAL 95B doub 4 n y CAJ CAN 95B sing 5 n y CAL CAY 95B sing 6 n y CAN CBC 95B doub 7 n y CAY OAF 95B sing 8 n n CAY CBA 95B doub 9 n y OAC CAW 95B doub 10 n n CBC CBA 95B sing 11 n y CBC CAW 95B sing 12 n n CBA OAH 95B sing 13 n n CAW N 95B sing 14 n n N CA 95B sing 15 n n CA CB 95B sing 16 n n CAP CB 95B sing 17 n n CAP CAO 95B sing 18 n n OAG CAZ 95B sing 19 n n OAE CAX 95B sing 20 n n CAQ NAS 95B sing 21 n n CAQ CAO 95B sing 22 n n NAS CAV 95B sing 23 n n CAZ CAX 95B doub 24 n y CAZ CBB 95B sing 25 n y CAX CAK 95B sing 26 n y CAV CBB 95B sing 27 n n CAV OAB 95B doub 28 n n CBB CAM 95B doub 29 n y CAK CAI 95B doub 30 n y CAM CAI 95B sing 31 n y OAH H1 95B sing 32 n n OAF H2 95B sing 33 n n CAL H3 95B sing 34 n n CAJ H4 95B sing 35 n n CAN H5 95B sing 36 n n N H6 95B sing 37 n n CA H7 95B sing 38 n n O H8 95B sing 39 n n CB H9 95B sing 40 n n CB H10 95B sing 41 n n CAP H11 95B sing 42 n n CAP H12 95B sing 43 n n CAO H13 95B sing 44 n n CAO H14 95B sing 45 n n CAQ H15 95B sing 46 n n CAQ H16 95B sing 47 n n NAS H17 95B sing 48 n n CAM H18 95B sing 49 n n CAI H19 95B sing 50 n n CAK H20 95B sing 51 n n OAE H21 95B sing 52 n n OAG H22 95B sing 53 n n # _atom_sites.entry_id 8BF6 _atom_sites.fract_transf_matrix[1][1] 0.027552 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008568 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007069 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FE A 1 301 301 FE FE . C 3 95B A 1 302 302 95B 95B . D 4 NI A 1 303 309 NI NI . E 4 NI A 1 304 310 NI NI . F 4 NI A 1 305 311 NI NI . G 4 NI A 1 306 312 NI NI . H 5 SO4 A 1 307 314 SO4 SO4 . I 4 NI A 1 308 1 NI NI . J 6 HOH A 1 401 2 HOH HOH . J 6 HOH A 2 402 22 HOH HOH . J 6 HOH A 3 403 18 HOH HOH . J 6 HOH A 4 404 6 HOH HOH . J 6 HOH A 5 405 15 HOH HOH . J 6 HOH A 6 406 28 HOH HOH . J 6 HOH A 7 407 7 HOH HOH . J 6 HOH A 8 408 9 HOH HOH . J 6 HOH A 9 409 1 HOH HOH . J 6 HOH A 10 410 23 HOH HOH . J 6 HOH A 11 411 24 HOH HOH . J 6 HOH A 12 412 11 HOH HOH . J 6 HOH A 13 413 20 HOH HOH . J 6 HOH A 14 414 12 HOH HOH . J 6 HOH A 15 415 27 HOH HOH . J 6 HOH A 16 416 21 HOH HOH . J 6 HOH A 17 417 10 HOH HOH . J 6 HOH A 18 418 26 HOH HOH . J 6 HOH A 19 419 19 HOH HOH . J 6 HOH A 20 420 5 HOH HOH . J 6 HOH A 21 421 16 HOH HOH . J 6 HOH A 22 422 8 HOH HOH . J 6 HOH A 23 423 4 HOH HOH . J 6 HOH A 24 424 29 HOH HOH . J 6 HOH A 25 425 14 HOH HOH . J 6 HOH A 26 426 25 HOH HOH . J 6 HOH A 27 427 17 HOH HOH . J 6 HOH A 28 428 30 HOH HOH . J 6 HOH A 29 429 13 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAH 95B . . . C 3 0.205 -10.168 25.581 1 48.15 0 OAH 95B 302 A 1 HETATM 2 C CBA 95B . . . C 3 0.894 -9.338 26.427 1 47.5 0 CBA 95B 302 A 1 HETATM 3 C CAY 95B . . . C 3 2.023 -8.778 25.832 1 46.83 0 CAY 95B 302 A 1 HETATM 4 O OAF 95B . . . C 3 2.201 -9.161 24.522 1 46.19 0 OAF 95B 302 A 1 HETATM 5 C CAL 95B . . . C 3 2.827 -7.901 26.544 1 47.02 0 CAL 95B 302 A 1 HETATM 6 C CAJ 95B . . . C 3 2.486 -7.569 27.86 1 46.73 0 CAJ 95B 302 A 1 HETATM 7 C CAN 95B . . . C 3 1.353 -8.091 28.43 1 51.13 0 CAN 95B 302 A 1 HETATM 8 C CBC 95B . . . C 3 0.528 -8.986 27.735 1 51.72 0 CBC 95B 302 A 1 HETATM 9 C CAW 95B . . . C 3 -0.714 -9.519 28.355 1 55.71 0 CAW 95B 302 A 1 HETATM 10 O OAC 95B . . . C 3 -0.916 -9.346 29.553 1 62.02 0 OAC 95B 302 A 1 HETATM 11 N N 95B . . . C 3 -1.625 -10.046 27.529 1 54.78 0 N 95B 302 A 1 HETATM 12 C CA 95B . . . C 3 -3.012 -10.304 27.899 1 58.54 0 CA 95B 302 A 1 HETATM 13 C C 95B . . . C 3 -3.155 -11.582 28.747 1 60.58 0 C 95B 302 A 1 HETATM 14 O OXT 95B . . . C 3 -4.283 -11.861 29.178 1 64.97 0 OXT 95B 302 A 1 HETATM 15 O O 95B . . . C 3 -2.146 -12.268 28.928 1 63.32 0 O 95B 302 A 1 HETATM 16 C CB 95B . . . C 3 -3.883 -10.421 26.645 1 57.01 0 CB 95B 302 A 1 HETATM 17 C CAP 95B . . . C 3 -3.702 -9.274 25.657 1 56.01 0 CAP 95B 302 A 1 HETATM 18 C CAO 95B . . . C 3 -4.495 -9.429 24.375 1 57.51 0 CAO 95B 302 A 1 HETATM 19 C CAQ 95B . . . C 3 -4.26 -8.317 23.368 1 55.62 0 CAQ 95B 302 A 1 HETATM 20 N NAS 95B . . . C 3 -2.89 -8.302 22.885 1 53.71 0 NAS 95B 302 A 1 HETATM 21 C CAV 95B . . . C 3 -2.554 -7.833 21.68 1 48.7 0 CAV 95B 302 A 1 HETATM 22 O OAB 95B . . . C 3 -3.367 -7.291 20.949 1 48.99 0 OAB 95B 302 A 1 HETATM 23 C CBB 95B . . . C 3 -1.211 -8.152 21.125 1 50.26 0 CBB 95B 302 A 1 HETATM 24 C CAM 95B . . . C 3 -0.871 -7.711 19.839 1 46.29 0 CAM 95B 302 A 1 HETATM 25 C CAI 95B . . . C 3 0.347 -8.006 19.295 1 49.04 0 CAI 95B 302 A 1 HETATM 26 C CAK 95B . . . C 3 1.266 -8.781 20.004 1 45.5 0 CAK 95B 302 A 1 HETATM 27 C CAX 95B . . . C 3 0.937 -9.266 21.257 1 46.42 0 CAX 95B 302 A 1 HETATM 28 O OAE 95B . . . C 3 1.781 -10.034 22.016 1 43.95 0 OAE 95B 302 A 1 HETATM 29 C CAZ 95B . . . C 3 -0.29 -8.942 21.829 1 46.52 0 CAZ 95B 302 A 1 HETATM 30 O OAG 95B . . . C 3 -0.519 -9.445 23.093 1 48.05 0 OAG 95B 302 A 1 HETATM 31 H H1 95B . . . C 3 -0.534 -10.524 25.869 0 30 0 H1 95B 302 A 1 HETATM 32 H H2 95B . . . C 3 2.966 -9.425 24.25 1 46.01 0 H2 95B 302 A 1 HETATM 33 H H3 95B . . . C 3 3.599 -7.538 26.144 1 46.02 0 H3 95B 302 A 1 HETATM 34 H H4 95B . . . C 3 3.025 -6.975 28.345 1 47.21 0 H4 95B 302 A 1 HETATM 35 H H5 95B . . . C 3 1.134 -7.863 29.316 1 50.58 0 H5 95B 302 A 1 HETATM 36 H H6 95B . . . C 3 -1.381 -10.273 26.725 1 55.29 0 H6 95B 302 A 1 HETATM 37 H H7 95B . . . C 3 -3.337 -9.534 28.432 1 57.89 0 H7 95B 302 A 1 HETATM 38 H H9 95B . . . C 3 -4.824 -10.455 26.918 1 58.8 0 H9 95B 302 A 1 HETATM 39 H H10 95B . . . C 3 -3.67 -11.263 26.191 1 57.79 0 H10 95B 302 A 1 HETATM 40 H H11 95B . . . C 3 -2.752 -9.202 25.433 1 55.01 0 H11 95B 302 A 1 HETATM 41 H H12 95B . . . C 3 -3.968 -8.437 26.096 1 56.03 0 H12 95B 302 A 1 HETATM 42 H H13 95B . . . C 3 -5.45 -9.458 24.596 1 58.39 0 H13 95B 302 A 1 HETATM 43 H H14 95B . . . C 3 -4.259 -10.286 23.959 1 57.34 0 H14 95B 302 A 1 HETATM 44 H H15 95B . . . C 3 -4.462 -7.453 23.787 1 55.58 0 H15 95B 302 A 1 HETATM 45 H H16 95B . . . C 3 -4.87 -8.436 22.609 1 56.59 0 H16 95B 302 A 1 HETATM 46 H H17 95B . . . C 3 -2.27 -8.638 23.392 1 52.3 0 H17 95B 302 A 1 HETATM 47 H H18 95B . . . C 3 -1.48 -7.18 19.357 1 48.42 0 H18 95B 302 A 1 HETATM 48 H H19 95B . . . C 3 0.565 -7.694 18.438 1 47.45 0 H19 95B 302 A 1 HETATM 49 H H20 95B . . . C 3 2.099 -8.997 19.621 1 45.97 0 H20 95B 302 A 1 HETATM 50 H H21 95B . . . C 3 2.526 -10.287 21.707 0 30 0 H21 95B 302 A 1 HETATM 51 H H22 95B . . . C 3 -1.182 -9.244 23.503 0 30 0 H22 95B 302 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 222 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 51 #