data_8BFW # _model_server_result.job_id K45tlgG9f2y4m_Oj1qEafQ _model_server_result.datetime_utc '2024-11-21 15:10:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8bfw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":101}' # _entry.id 8BFW # _exptl.entry_id 8BFW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 492.002 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-[3,5-bis(3-bromanylpropanoyl)-1,3,5-triazinan-1-yl]-3-bromanyl-propan-1-one _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.93 _cell.angle_gamma 90 _cell.entry_id 8BFW _cell.length_a 80.937 _cell.length_b 76.966 _cell.length_c 124.226 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8BFW _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 116 A CYS 133 1_555 A SG CYS 124 A CYS 141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf2 A SG CYS 327 A CYS 344 1_555 A SG CYS 344 A CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf3 A SG CYS 513 A CYS 530 1_555 A SG CYS 525 A CYS 542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf4 C SG CYS 116 C CYS 133 1_555 C SG CYS 124 C CYS 141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf5 C SG CYS 327 C CYS 344 1_555 C SG CYS 344 C CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf6 C SG CYS 513 C CYS 530 1_555 C SG CYS 525 C CYS 542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? covale ? covale1 B SG CYS 2 B CYS 1 1_555 E C10 LFI . B LFI 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.815 ? covale ? covale2 B SG CYS 7 B CYS 6 1_555 E C12 LFI . B LFI 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.616 ? covale ? covale3 B SG CYS 16 B CYS 15 1_555 E C11 LFI . B LFI 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.618 ? covale ? covale4 B C ALA 17 B ALA 16 1_555 B N NH2 18 B NH2 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.232 ? covale ? covale5 D SG CYS 2 D CYS 1 1_555 F C12 LFI . D LFI 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.612 ? covale ? covale6 D SG CYS 7 D CYS 6 1_555 F C11 LFI . D LFI 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.6 ? covale ? covale7 D SG CYS 16 D CYS 15 1_555 F C10 LFI . D LFI 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.811 ? covale ? covale8 D C ALA 17 D ALA 16 1_555 D N NH2 18 D NH2 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.239 ? # _chem_comp.formula 'C12 H18 Br3 N3 O3' _chem_comp.formula_weight 492.002 _chem_comp.id LFI _chem_comp.mon_nstd_flag . _chem_comp.name 1-[3,5-bis(3-bromanylpropanoyl)-1,3,5-triazinan-1-yl]-3-bromanyl-propan-1-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'Chemical crosslinker' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C6 LFI doub 194 n n C8 C10 LFI sing 195 n n C8 C4 LFI sing 196 n n C1 N2 LFI sing 197 n n C1 N1 LFI sing 198 n n C6 N2 LFI sing 199 n n C6 C7 LFI sing 200 n n C4 N1 LFI sing 201 n n C4 O2 LFI doub 202 n n N2 C2 LFI sing 203 n n N1 C3 LFI sing 204 n n C7 C12 LFI sing 205 n n C3 N3 LFI sing 206 n n C2 N3 LFI sing 207 n n N3 C5 LFI sing 208 n n C5 O3 LFI doub 209 n n C5 C9 LFI sing 210 n n C9 C11 LFI sing 211 n n C10 H1 LFI sing 212 n n C10 H2 LFI sing 213 n n C11 H4 LFI sing 214 n n C11 H5 LFI sing 215 n n C12 H7 LFI sing 216 n n C12 H8 LFI sing 217 n n C1 H10 LFI sing 218 n n C1 H11 LFI sing 219 n n C2 H12 LFI sing 220 n n C2 H13 LFI sing 221 n n C3 H14 LFI sing 222 n n C3 H15 LFI sing 223 n n C7 H16 LFI sing 224 n n C7 H17 LFI sing 225 n n C8 H18 LFI sing 226 n n C8 H19 LFI sing 227 n n C9 H20 LFI sing 228 n n C9 H21 LFI sing 229 n n C10 BR1 LFI sing 230 n n C12 BR2 LFI sing 231 n n C11 BR3 LFI sing 232 n n # _atom_sites.entry_id 8BFW _atom_sites.fract_transf_matrix[1][1] 0.012355 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004238 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012993 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00851 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 LFI B 1 101 101 LFI TAT . F 3 LFI D 1 101 101 LFI TAT . G 4 HOH A 1 701 701 HOH HOH . G 4 HOH A 2 702 702 HOH HOH . G 4 HOH A 3 703 703 HOH HOH . G 4 HOH A 4 704 705 HOH HOH . G 4 HOH A 5 705 704 HOH HOH . G 4 HOH A 6 706 711 HOH HOH . G 4 HOH A 7 707 706 HOH HOH . G 4 HOH A 8 708 707 HOH HOH . G 4 HOH A 9 709 708 HOH HOH . G 4 HOH A 10 710 709 HOH HOH . G 4 HOH A 11 711 710 HOH HOH . G 4 HOH A 12 712 712 HOH HOH . G 4 HOH A 13 713 713 HOH HOH . H 4 HOH B 1 201 714 HOH HOH . I 4 HOH C 1 701 701 HOH HOH . I 4 HOH C 2 702 702 HOH HOH . I 4 HOH C 3 703 703 HOH HOH . I 4 HOH C 4 704 704 HOH HOH . I 4 HOH C 5 705 705 HOH HOH . I 4 HOH C 6 706 706 HOH HOH . I 4 HOH C 7 707 707 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 LFI . . . E 3 -0.394 -3.758 51.414 1 104.2 ? C10 LFI 101 B 1 HETATM 2 C C11 LFI . . . E 3 -2.956 -10.308 53.579 1 95.67 ? C11 LFI 101 B 1 HETATM 3 C C12 LFI . . . E 3 4.696 -8.587 54.764 1 92.94 ? C12 LFI 101 B 1 HETATM 4 C C1 LFI . . . E 3 2.421 -7.757 50.98 1 105.36 ? C1 LFI 101 B 1 HETATM 5 C C2 LFI . . . E 3 1.484 -9.96 51.335 1 109.4 ? C2 LFI 101 B 1 HETATM 6 C C3 LFI . . . E 3 -0.038 -8.127 50.996 1 112.05 ? C3 LFI 101 B 1 HETATM 7 C C4 LFI . . . E 3 0.901 -5.919 51.631 1 109.59 ? C4 LFI 101 B 1 HETATM 8 C C5 LFI . . . E 3 -0.671 -10.004 52.576 1 97.33 ? C5 LFI 101 B 1 HETATM 9 C C6 LFI . . . E 3 3.405 -9.281 52.723 1 110.13 ? C6 LFI 101 B 1 HETATM 10 C C7 LFI . . . E 3 3.98 -8.132 53.512 1 100.96 ? C7 LFI 101 B 1 HETATM 11 C C8 LFI . . . E 3 -0.458 -5.278 51.445 1 104.15 ? C8 LFI 101 B 1 HETATM 12 C C9 LFI . . . E 3 -2.011 -9.367 52.864 1 94.78 ? C9 LFI 101 B 1 HETATM 13 N N1 LFI . . . E 3 1.083 -7.189 51.207 1 111.92 ? N1 LFI 101 B 1 HETATM 14 N N2 LFI . . . E 3 2.521 -9.007 51.741 1 110.59 ? N2 LFI 101 B 1 HETATM 15 N N3 LFI . . . E 3 0.177 -9.403 51.706 1 109.5 ? N3 LFI 101 B 1 HETATM 16 O O1 LFI . . . E 3 3.728 -10.437 52.98 1 116.3 ? O1 LFI 101 B 1 HETATM 17 O O2 LFI . . . E 3 1.805 -5.308 52.194 1 112.15 ? O2 LFI 101 B 1 HETATM 18 O O3 LFI . . . E 3 -0.366 -11.05 53.142 1 87.91 ? O3 LFI 101 B 1 # _model_server_stats.io_time_ms 40 _model_server_stats.parse_time_ms 43 _model_server_stats.create_model_time_ms 56 _model_server_stats.query_time_ms 262 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 18 #