data_8BGP # _model_server_result.job_id c_BDdD1g7Z5U9vkA1GHEvA _model_server_result.datetime_utc '2024-10-19 05:29:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8bgp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":302}' # _entry.id 8BGP # _exptl.entry_id 8BGP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 12 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8BGP _cell.length_a 78.642 _cell.length_b 158.654 _cell.length_c 158.517 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8BGP _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N ? 2 O N N ? 2 P N N ? 2 Q N N ? 2 R N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A ND1 HIS 40 A HIS 40 1_555 H ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.984 ? metalc ? metalc2 A OD2 ASP 43 A ASP 43 1_555 H ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.84 ? metalc ? metalc3 A NE2 HIS 151 A HIS 151 1_555 H ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc4 A ND1 HIS 182 A HIS 182 1_555 I ZN ZN . A ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? metalc ? metalc5 A OD2 ASP 221 A ASP 221 1_555 G ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc6 G ZN ZN . A ZN 301 1_455 E ND1 HIS 182 E HIS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? metalc ? metalc7 H ZN ZN . A ZN 302 1_555 S O HOH . A HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? metalc ? metalc8 I ZN ZN . A ZN 303 1_555 S O HOH . A HOH 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? metalc ? metalc9 I ZN ZN . A ZN 303 1_555 S O HOH . A HOH 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.525 ? metalc ? metalc10 B ND1 HIS 40 B HIS 40 1_555 J ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc11 B OD2 ASP 43 B ASP 43 1_555 J ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc12 B NE2 HIS 151 B HIS 151 1_555 J ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc13 B ND1 HIS 182 B HIS 182 1_555 K ZN ZN . B ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.462 ? metalc ? metalc14 J ZN ZN . B ZN 301 1_555 T O HOH . B HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.533 ? metalc ? metalc15 K ZN ZN . B ZN 302 1_555 T O HOH . B HOH 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? metalc ? metalc16 K ZN ZN . B ZN 302 1_555 T O HOH . B HOH 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.63 ? metalc ? metalc17 C ND1 HIS 40 C HIS 40 1_555 L ZN ZN . C ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? metalc ? metalc18 C OD1 ASP 43 C ASP 43 1_555 L ZN ZN . C ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.661 ? metalc ? metalc19 C OD2 ASP 43 C ASP 43 1_555 L ZN ZN . C ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.946 ? metalc ? metalc20 C NE2 HIS 151 C HIS 151 1_555 L ZN ZN . C ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc21 C ND1 HIS 182 C HIS 182 1_555 M ZN ZN . C ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.473 ? metalc ? metalc22 D ND1 HIS 40 D HIS 40 1_555 N ZN ZN . D ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc23 D OD1 ASP 43 D ASP 43 1_555 N ZN ZN . D ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.635 ? metalc ? metalc24 D OD2 ASP 43 D ASP 43 1_555 N ZN ZN . D ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.987 ? metalc ? metalc25 D NE2 HIS 151 D HIS 151 1_555 N ZN ZN . D ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc26 D ND1 HIS 182 D HIS 182 1_555 O ZN ZN . D ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? metalc ? metalc27 E ND1 HIS 40 E HIS 40 1_555 P ZN ZN . E ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? metalc ? metalc28 E OD2 ASP 43 E ASP 43 1_555 P ZN ZN . E ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.93 ? metalc ? metalc29 E NE2 HIS 151 E HIS 151 1_555 P ZN ZN . E ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? metalc ? metalc30 P ZN ZN . E ZN 301 1_555 W O HOH . E HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.641 ? metalc ? metalc31 W O HOH . E HOH 401 1_555 Q ZN ZN . F ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? metalc ? metalc32 F ND1 HIS 40 F HIS 40 1_555 Q ZN ZN . F ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? metalc ? metalc33 F OD2 ASP 43 F ASP 43 1_555 Q ZN ZN . F ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? metalc ? metalc34 F NE2 HIS 151 F HIS 151 1_555 Q ZN ZN . F ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? metalc ? metalc35 F ND1 HIS 182 F HIS 182 1_555 R ZN ZN . F ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? metalc ? metalc36 R ZN ZN . F ZN 302 1_555 X O HOH . F HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.992 ? metalc ? metalc37 R ZN ZN . F ZN 302 1_555 X O HOH . F HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.561 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8BGP _atom_sites.fract_transf_matrix[1][1] 0.012716 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006303 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006308 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 ZN A 1 301 1 ZN ZN . H 2 ZN A 1 302 4 ZN ZN . I 2 ZN A 1 303 9 ZN ZN . J 2 ZN B 1 301 6 ZN ZN . K 2 ZN B 1 302 8 ZN ZN . L 2 ZN C 1 301 3 ZN ZN . M 2 ZN C 1 302 11 ZN ZN . N 2 ZN D 1 301 7 ZN ZN . O 2 ZN D 1 302 12 ZN ZN . P 2 ZN E 1 301 2 ZN ZN . Q 2 ZN F 1 301 5 ZN ZN . R 2 ZN F 1 302 10 ZN ZN . S 3 HOH A 1 401 3 HOH HOH . S 3 HOH A 2 402 13 HOH HOH . S 3 HOH A 3 403 15 HOH HOH . S 3 HOH A 4 404 14 HOH HOH . T 3 HOH B 1 401 8 HOH HOH . T 3 HOH B 2 402 10 HOH HOH . T 3 HOH B 3 403 11 HOH HOH . T 3 HOH B 4 404 12 HOH HOH . U 3 HOH C 1 401 4 HOH HOH . U 3 HOH C 2 402 6 HOH HOH . V 3 HOH D 1 401 1 HOH HOH . V 3 HOH D 2 402 2 HOH HOH . V 3 HOH D 3 403 9 HOH HOH . W 3 HOH E 1 401 7 HOH HOH . W 3 HOH E 2 402 5 HOH HOH . X 3 HOH F 1 401 17 HOH HOH . X 3 HOH F 2 402 16 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id O _atom_site.label_entity_id 2 _atom_site.Cartn_x -18.917 _atom_site.Cartn_y 4.231 _atom_site.Cartn_z 58.547 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 64.98 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 302 _atom_site.auth_asym_id D _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 340 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #