data_8BH5 # _model_server_result.job_id 29FNT7buLhyH4LmNMAdwDg _model_server_result.datetime_utc '2024-11-21 11:23:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8bh5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":702}' # _entry.id 8BH5 # _exptl.entry_id 8BH5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 12 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.105 _cell.angle_gamma 90 _cell.entry_id 8BH5 _cell.length_a 186.846 _cell.length_b 99.987 _cell.length_c 56.486 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8BH5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 F N N ? 6 G N N ? 6 H N N ? 6 I N N ? 6 K N N ? 6 L N N ? 6 M N N ? 6 N N N ? 6 O N N ? 6 P N N ? 6 Q N N ? 6 R N N # _pdbx_entity_branch.entity_id 5 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 5 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 FUC _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O6 _pdbx_entity_branch_link.leaving_atom_id_2 HO6 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 5 n E NAG 1 A 1 NAG E 601 NAG 5 n E FUC 2 A 2 FUC E 600 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 H CYS 22 1_555 A SG CYS 95 H CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 A SG CYS 144 H CYS 144 1_555 A SG CYS 200 H CYS 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 B SG CYS 23 L CYS 23 1_555 B SG CYS 89 L CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf4 B SG CYS 134 L CYS 134 1_555 B SG CYS 194 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf5 C SG CYS 10 E CYS 336 1_555 C SG CYS 35 E CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf6 C SG CYS 53 E CYS 379 1_555 C SG CYS 106 E CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf7 C SG CYS 65 E CYS 391 1_555 C SG CYS 199 E CYS 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf8 C SG CYS 154 E CYS 480 1_555 C SG CYS 162 E CYS 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf9 D SG CYS 22 C CYS 22 1_555 D SG CYS 96 C CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? covale ? covale1 C ND2 ASN 17 E ASN 343 1_555 E C1 NAG . A NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale2 E O6 NAG . A NAG 1 1_555 E C1 FUC . A FUC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 152 n n C1 C2 GOL sing 153 n n C1 H11 GOL sing 154 n n C1 H12 GOL sing 155 n n O1 HO1 GOL sing 156 n n C2 O2 GOL sing 157 n n C2 C3 GOL sing 158 n n C2 H2 GOL sing 159 n n O2 HO2 GOL sing 160 n n C3 O3 GOL sing 161 n n C3 H31 GOL sing 162 n n C3 H32 GOL sing 163 n n O3 HO3 GOL sing 164 n n # _atom_sites.entry_id 8BH5 _atom_sites.fract_transf_matrix[1][1] 0.005352 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001345 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010001 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018254 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 6 GOL H 1 301 301 GOL GOL . G 6 GOL H 1 302 501 GOL GOL . H 6 GOL H 1 303 601 GOL GOL . I 6 GOL H 1 304 401 GOL GOL . J 7 PO4 H 1 305 1 PO4 PO4 . K 6 GOL L 1 401 401 GOL GOL . L 6 GOL L 1 402 301 GOL GOL . M 6 GOL L 1 403 501 GOL GOL . N 6 GOL E 1 701 701 GOL GOL . O 6 GOL E 1 702 901 GOL GOL . P 6 GOL E 1 703 1001 GOL GOL . Q 6 GOL E 1 704 1101 GOL GOL . R 6 GOL C 1 201 201 GOL GOL . S 8 HOH H 1 401 40 HOH HOH . S 8 HOH H 2 402 30 HOH HOH . S 8 HOH H 3 403 11 HOH HOH . S 8 HOH H 4 404 145 HOH HOH . S 8 HOH H 5 405 99 HOH HOH . S 8 HOH H 6 406 115 HOH HOH . S 8 HOH H 7 407 49 HOH HOH . S 8 HOH H 8 408 24 HOH HOH . S 8 HOH H 9 409 81 HOH HOH . S 8 HOH H 10 410 73 HOH HOH . S 8 HOH H 11 411 153 HOH HOH . S 8 HOH H 12 412 155 HOH HOH . S 8 HOH H 13 413 8 HOH HOH . S 8 HOH H 14 414 59 HOH HOH . S 8 HOH H 15 415 51 HOH HOH . S 8 HOH H 16 416 117 HOH HOH . S 8 HOH H 17 417 114 HOH HOH . S 8 HOH H 18 418 61 HOH HOH . S 8 HOH H 19 419 6 HOH HOH . S 8 HOH H 20 420 57 HOH HOH . S 8 HOH H 21 421 98 HOH HOH . S 8 HOH H 22 422 67 HOH HOH . S 8 HOH H 23 423 18 HOH HOH . S 8 HOH H 24 424 47 HOH HOH . S 8 HOH H 25 425 113 HOH HOH . S 8 HOH H 26 426 35 HOH HOH . S 8 HOH H 27 427 32 HOH HOH . S 8 HOH H 28 428 48 HOH HOH . S 8 HOH H 29 429 83 HOH HOH . S 8 HOH H 30 430 71 HOH HOH . S 8 HOH H 31 431 12 HOH HOH . S 8 HOH H 32 432 54 HOH HOH . S 8 HOH H 33 433 125 HOH HOH . S 8 HOH H 34 434 10 HOH HOH . S 8 HOH H 35 435 70 HOH HOH . S 8 HOH H 36 436 52 HOH HOH . S 8 HOH H 37 437 110 HOH HOH . S 8 HOH H 38 438 89 HOH HOH . S 8 HOH H 39 439 63 HOH HOH . S 8 HOH H 40 440 17 HOH HOH . S 8 HOH H 41 441 68 HOH HOH . S 8 HOH H 42 442 154 HOH HOH . S 8 HOH H 43 443 146 HOH HOH . S 8 HOH H 44 444 64 HOH HOH . S 8 HOH H 45 445 75 HOH HOH . S 8 HOH H 46 446 136 HOH HOH . S 8 HOH H 47 447 97 HOH HOH . S 8 HOH H 48 448 156 HOH HOH . S 8 HOH H 49 449 162 HOH HOH . S 8 HOH H 50 450 43 HOH HOH . S 8 HOH H 51 451 161 HOH HOH . S 8 HOH H 52 452 109 HOH HOH . S 8 HOH H 53 453 69 HOH HOH . S 8 HOH H 54 454 112 HOH HOH . T 8 HOH L 1 501 34 HOH HOH . T 8 HOH L 2 502 31 HOH HOH . T 8 HOH L 3 503 39 HOH HOH . T 8 HOH L 4 504 55 HOH HOH . T 8 HOH L 5 505 23 HOH HOH . T 8 HOH L 6 506 87 HOH HOH . T 8 HOH L 7 507 100 HOH HOH . T 8 HOH L 8 508 7 HOH HOH . T 8 HOH L 9 509 20 HOH HOH . T 8 HOH L 10 510 14 HOH HOH . T 8 HOH L 11 511 1 HOH HOH . T 8 HOH L 12 512 151 HOH HOH . T 8 HOH L 13 513 82 HOH HOH . T 8 HOH L 14 514 79 HOH HOH . T 8 HOH L 15 515 46 HOH HOH . T 8 HOH L 16 516 74 HOH HOH . T 8 HOH L 17 517 33 HOH HOH . T 8 HOH L 18 518 101 HOH HOH . T 8 HOH L 19 519 158 HOH HOH . T 8 HOH L 20 520 16 HOH HOH . T 8 HOH L 21 521 27 HOH HOH . T 8 HOH L 22 522 96 HOH HOH . T 8 HOH L 23 523 21 HOH HOH . T 8 HOH L 24 524 152 HOH HOH . T 8 HOH L 25 525 25 HOH HOH . T 8 HOH L 26 526 124 HOH HOH . T 8 HOH L 27 527 85 HOH HOH . T 8 HOH L 28 528 105 HOH HOH . T 8 HOH L 29 529 138 HOH HOH . T 8 HOH L 30 530 122 HOH HOH . T 8 HOH L 31 531 94 HOH HOH . T 8 HOH L 32 532 84 HOH HOH . T 8 HOH L 33 533 76 HOH HOH . T 8 HOH L 34 534 149 HOH HOH . T 8 HOH L 35 535 128 HOH HOH . T 8 HOH L 36 536 150 HOH HOH . T 8 HOH L 37 537 127 HOH HOH . T 8 HOH L 38 538 42 HOH HOH . T 8 HOH L 39 539 129 HOH HOH . T 8 HOH L 40 540 104 HOH HOH . T 8 HOH L 41 541 111 HOH HOH . T 8 HOH L 42 542 147 HOH HOH . T 8 HOH L 43 543 157 HOH HOH . T 8 HOH L 44 544 159 HOH HOH . T 8 HOH L 45 545 116 HOH HOH . T 8 HOH L 46 546 143 HOH HOH . T 8 HOH L 47 547 103 HOH HOH . T 8 HOH L 48 548 91 HOH HOH . T 8 HOH L 49 549 93 HOH HOH . T 8 HOH L 50 550 133 HOH HOH . T 8 HOH L 51 551 119 HOH HOH . T 8 HOH L 52 552 148 HOH HOH . T 8 HOH L 53 553 108 HOH HOH . T 8 HOH L 54 554 135 HOH HOH . T 8 HOH L 55 555 72 HOH HOH . U 8 HOH E 1 801 142 HOH HOH . U 8 HOH E 2 802 3 HOH HOH . U 8 HOH E 3 803 2 HOH HOH . U 8 HOH E 4 804 80 HOH HOH . U 8 HOH E 5 805 86 HOH HOH . U 8 HOH E 6 806 92 HOH HOH . U 8 HOH E 7 807 56 HOH HOH . U 8 HOH E 8 808 50 HOH HOH . U 8 HOH E 9 809 13 HOH HOH . U 8 HOH E 10 810 4 HOH HOH . U 8 HOH E 11 811 5 HOH HOH . U 8 HOH E 12 812 15 HOH HOH . U 8 HOH E 13 813 29 HOH HOH . U 8 HOH E 14 814 53 HOH HOH . U 8 HOH E 15 815 120 HOH HOH . U 8 HOH E 16 816 28 HOH HOH . U 8 HOH E 17 817 38 HOH HOH . U 8 HOH E 18 818 26 HOH HOH . U 8 HOH E 19 819 9 HOH HOH . U 8 HOH E 20 820 44 HOH HOH . U 8 HOH E 21 821 107 HOH HOH . U 8 HOH E 22 822 126 HOH HOH . U 8 HOH E 23 823 66 HOH HOH . U 8 HOH E 24 824 41 HOH HOH . U 8 HOH E 25 825 45 HOH HOH . U 8 HOH E 26 826 62 HOH HOH . U 8 HOH E 27 827 134 HOH HOH . U 8 HOH E 28 828 77 HOH HOH . U 8 HOH E 29 829 118 HOH HOH . U 8 HOH E 30 830 36 HOH HOH . U 8 HOH E 31 831 106 HOH HOH . U 8 HOH E 32 832 144 HOH HOH . U 8 HOH E 33 833 163 HOH HOH . U 8 HOH E 34 834 102 HOH HOH . U 8 HOH E 35 835 139 HOH HOH . U 8 HOH E 36 836 121 HOH HOH . U 8 HOH E 37 837 123 HOH HOH . U 8 HOH E 38 838 131 HOH HOH . V 8 HOH C 1 301 132 HOH HOH . V 8 HOH C 2 302 78 HOH HOH . V 8 HOH C 3 303 95 HOH HOH . V 8 HOH C 4 304 130 HOH HOH . V 8 HOH C 5 305 90 HOH HOH . V 8 HOH C 6 306 37 HOH HOH . V 8 HOH C 7 307 60 HOH HOH . V 8 HOH C 8 308 137 HOH HOH . V 8 HOH C 9 309 160 HOH HOH . V 8 HOH C 10 310 88 HOH HOH . V 8 HOH C 11 311 58 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . O 6 66.57 -29.563 2.713 1 71.49 ? C1 GOL 702 E 1 HETATM 2 O O1 GOL . . . O 6 66.864 -28.434 3.476 1 75.91 ? O1 GOL 702 E 1 HETATM 3 C C2 GOL . . . O 6 67.918 -30.104 2.187 1 78.09 ? C2 GOL 702 E 1 HETATM 4 O O2 GOL . . . O 6 68.67 -29.11 1.574 1 90.76 ? O2 GOL 702 E 1 HETATM 5 C C3 GOL . . . O 6 68.624 -30.686 3.434 1 72.67 ? C3 GOL 702 E 1 HETATM 6 O O3 GOL . . . O 6 69.991 -30.652 3.167 1 82.78 ? O3 GOL 702 E 1 # _model_server_stats.io_time_ms 90 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #