data_8BHD # _model_server_result.job_id '_vwPzLO6-_OdxdiO1hP6Ag' _model_server_result.datetime_utc '2025-04-13 05:13:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8bhd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"DA","auth_seq_id":302}' # _entry.id 8BHD # _exptl.entry_id 8BHD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 158.925 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TERBIUM(III) ION' _entity.pdbx_number_of_molecules 22 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.7 _cell.angle_gamma 90 _cell.entry_id 8BHD _cell.length_a 130.11 _cell.length_b 88.51 _cell.length_c 168.64 _cell.Z_PDB 20 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8BHD _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 ? dimeric 2 author_defined_assembly 3 ? tetrameric 4 author_defined_assembly 4 ? hexameric 6 author_defined_assembly 5 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression B,C,Q,R,S,T,U,V,W,X,Y,Z,AA,BA 1 1 D,E,CA,DA,EA,FA,GA,HA,IA,JA 2 1 A,F,G,H,I,J,K,L,M,N,O,P 3 1,2 A,B,C,D,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA 4 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA 5 1 A,F,G,H,I,J,K,L,M,N,O,P 5 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'point symmetry operation' ? ? -1 0 0 0 1 0 0 0 -1 84.48 0 162.3 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 J N N ? 4 K N N ? 4 L N N ? 4 M N N ? 4 N N N ? 4 O N N ? 4 P N N ? 4 T N N ? 4 U N N ? 4 V N N ? 4 Y N N ? 4 Z N N ? 4 AA N N ? 4 BA N N ? 4 CA N N ? 4 DA N N ? 4 EA N N ? 4 FA N N ? 4 GA N N ? 4 HA N N ? 4 IA N N ? 4 JA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 210 A ASP 210 1_555 L TB TB . A TB 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.26 ? metalc ? metalc2 A OD2 ASP 210 A ASP 210 1_555 L TB TB . A TB 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? metalc ? metalc3 B OE1 GLU 129 B GLU 129 1_555 T TB TB . B TB 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.65 ? metalc ? metalc4 B OE2 GLU 129 B GLU 129 1_555 T TB TB . B TB 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.978 ? metalc ? metalc5 B OE1 GLU 148 B GLU 148 1_555 V TB TB . B TB 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.51 ? metalc ? metalc6 B OE2 GLU 148 B GLU 148 1_555 V TB TB . B TB 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.146 ? metalc ? metalc7 B OD1 ASP 210 B ASP 210 1_555 U TB TB . B TB 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.449 ? metalc ? metalc8 B OD2 ASP 210 B ASP 210 1_555 U TB TB . B TB 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? metalc ? metalc9 D OE1 GLU 129 D GLU 129 1_555 EA TB TB . D TB 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.978 ? metalc ? metalc10 E OE1 GLU 129 E GLU 129 1_555 GA TB TB . E TB 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.679 ? metalc ? metalc11 E OE2 GLU 129 E GLU 129 1_555 GA TB TB . E TB 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.449 ? metalc ? metalc12 E OD2 ASP 210 E ASP 210 1_555 IA TB TB . E TB 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.6 ? # _chem_comp.formula 'Tb 3' _chem_comp.formula_weight 158.925 _chem_comp.id TB _chem_comp.mon_nstd_flag . _chem_comp.name 'TERBIUM(III) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8BHD _atom_sites.fract_transf_matrix[1][1] 0.007686 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00216 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011298 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00616 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 SO4 A 1 301 1 SO4 SO4 . G 2 SO4 A 1 302 2 SO4 SO4 . H 3 GOL A 1 303 1 GOL GOL . I 3 GOL A 1 304 2 GOL GOL . J 4 TB A 1 305 1 TB TB . K 4 TB A 1 306 4 TB TB . L 4 TB A 1 307 8 TB TB . M 4 TB A 1 308 11 TB TB . N 4 TB A 1 309 15 TB TB . O 4 TB A 1 310 17 TB TB . P 4 TB A 1 311 20 TB TB . Q 2 SO4 B 1 301 3 SO4 SO4 . R 2 SO4 B 1 302 4 SO4 SO4 . S 3 GOL B 1 303 3 GOL GOL . T 4 TB B 1 304 3 TB TB . U 4 TB B 1 305 9 TB TB . V 4 TB B 1 306 22 TB TB . W 2 SO4 C 1 301 5 SO4 SO4 . X 3 GOL C 1 302 4 GOL GOL . Y 4 TB C 1 303 2 TB TB . Z 4 TB C 1 304 5 TB TB . AA 4 TB C 1 305 13 TB TB . BA 4 TB C 1 306 16 TB TB . CA 4 TB D 1 301 6 TB TB . DA 4 TB D 1 302 7 TB TB . EA 4 TB D 1 303 10 TB TB . FA 4 TB D 1 304 18 TB TB . GA 4 TB E 1 301 12 TB TB . HA 4 TB E 1 302 14 TB TB . IA 4 TB E 1 303 19 TB TB . JA 4 TB E 1 304 21 TB TB . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol TB _atom_site.label_atom_id TB _atom_site.label_comp_id TB _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id DA _atom_site.label_entity_id 4 _atom_site.Cartn_x 5.018 _atom_site.Cartn_y 27.544 _atom_site.Cartn_z 18.942 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 278.32 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id TB _atom_site.auth_comp_id TB _atom_site.auth_seq_id 302 _atom_site.auth_asym_id D _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 33 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #