data_8BHG
#
_model_server_result.job_id            9V3krhRqG7BPOGYAQSMW3w 
_model_server_result.datetime_utc      '2024-11-29 02:53:21' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8bhg 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"R","auth_seq_id":503}' 
#
_entry.id    8BHG 
#
_exptl.entry_id    8BHG 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          106.06 
_cell.angle_gamma         90 
_cell.entry_id            8BHG 
_cell.length_a            81.14 
_cell.length_b            137.637 
_cell.length_c            113.351 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8BHG 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    'P 2yb' 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 I N N 
? 6 N N N 
? 6 O N N 
? 6 R N N 
? 6 V N N 
? 6 X N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 142 A CYS 142 1_555 A SG CYS 156 A CYS 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf2 B SG CYS 151 B CYS 151 1_555 B SG CYS 165 B CYS 165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf3 C SG CYS 142 C CYS 142 1_555 C SG CYS 156 C CYS 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf4 D SG CYS 142 D CYS 142 1_555 D SG CYS 156 D CYS 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf5 E SG CYS 142 E CYS 142 1_555 E SG CYS 156 E CYS 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
covale ? covale1 A ND2 ASN 205 A ASN 205 1_555 I C1 NAG . A NAG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.361 ? 
covale ? covale2 B ND2 ASN 90 B ASN 90 1_555 O C1 NAG . B NAG 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.361 ? 
covale ? covale3 B ND2 ASN 208 B ASN 208 1_555 N C1 NAG . B NAG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.524 ? 
covale ? covale4 C ND2 ASN 205 C ASN 205 1_555 R C1 NAG . C NAG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.471 ? 
covale ? covale5 D ND2 ASN 205 D ASN 205 1_555 V C1 NAG . D NAG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.512 ? 
covale ? covale6 E ND2 ASN 205 E ASN 205 1_555 X C1 NAG . E NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.405 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 313 n n 
C1 O1 NAG sing 314 n n 
C1 O5 NAG sing 315 n n 
C1 H1 NAG sing 316 n n 
C2 C3 NAG sing 317 n n 
C2 N2 NAG sing 318 n n 
C2 H2 NAG sing 319 n n 
C3 C4 NAG sing 320 n n 
C3 O3 NAG sing 321 n n 
C3 H3 NAG sing 322 n n 
C4 C5 NAG sing 323 n n 
C4 O4 NAG sing 324 n n 
C4 H4 NAG sing 325 n n 
C5 C6 NAG sing 326 n n 
C5 O5 NAG sing 327 n n 
C5 H5 NAG sing 328 n n 
C6 O6 NAG sing 329 n n 
C6 H61 NAG sing 330 n n 
C6 H62 NAG sing 331 n n 
C7 C8 NAG sing 332 n n 
C7 N2 NAG sing 333 n n 
C7 O7 NAG doub 334 n n 
C8 H81 NAG sing 335 n n 
C8 H82 NAG sing 336 n n 
C8 H83 NAG sing 337 n n 
N2 HN2 NAG sing 338 n n 
O1 HO1 NAG sing 339 n n 
O3 HO3 NAG sing 340 n n 
O4 HO4 NAG sing 341 n n 
O6 HO6 NAG sing 342 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     8BHG 
_atom_sites.fract_transf_matrix[1][1]    0.012324 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003548 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007265 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00918 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 3 QMU A 1 501 1 QMU BRZ . 
G 4 DMU A 1 502 1 DMU DMU . 
H 5 NO3 A 1 503 2 NO3 NO3 . 
I 6 NAG A 1 504 1 NAG NAG . 
J 3 QMU B 1 501 2 QMU BRZ . 
K 3 QMU B 1 502 5 QMU BRZ . 
L 4 DMU B 1 503 5 DMU DMU . 
M 5 NO3 B 1 504 1 NO3 NO3 . 
N 6 NAG B 1 505 1 NAG NAG . 
O 6 NAG B 1 506 2 NAG NAG . 
P 4 DMU C 1 501 4 DMU DMU . 
Q 5 NO3 C 1 502 3 NO3 NO3 . 
R 6 NAG C 1 503 1 NAG NAG . 
S 3 QMU D 1 501 3 QMU BRZ . 
T 3 QMU D 1 502 4 QMU BRZ . 
U 4 DMU D 1 503 3 DMU DMU . 
V 6 NAG D 1 504 1 NAG NAG . 
W 4 DMU E 1 501 2 DMU DMU . 
X 6 NAG E 1 502 1 NAG NAG . 
Y 7 HOH A 1 601 3 HOH HOH . 
Y 7 HOH A 2 602 1 HOH HOH . 
Y 7 HOH A 3 603 4 HOH HOH . 
Z 7 HOH B 1 601 8 HOH HOH . 
Z 7 HOH B 2 602 6 HOH HOH . 
Z 7 HOH B 3 603 5 HOH HOH . 
Z 7 HOH B 4 604 9 HOH HOH . 
AA 7 HOH C 1 601 2 HOH HOH . 
AA 7 HOH C 2 602 7 HOH HOH . 
AA 7 HOH C 3 603 11 HOH HOH . 
AA 7 HOH C 4 604 10 HOH HOH . 
BA 7 HOH D 1 601 12 HOH HOH . 
BA 7 HOH D 2 602 14 HOH HOH . 
CA 7 HOH E 1 601 13 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . R 6 49.461 44.212 236.826 1 53.06 ? C1 NAG 503 C 1 
HETATM 2 C C2 NAG . . . R 6 50.018 45.511 237.4 1 54.57 ? C2 NAG 503 C 1 
HETATM 3 C C3 NAG . . . R 6 49.418 46.702 236.667 1 51.07 ? C3 NAG 503 C 1 
HETATM 4 C C4 NAG . . . R 6 49.665 46.55 235.174 1 48.81 ? C4 NAG 503 C 1 
HETATM 5 C C5 NAG . . . R 6 49.12 45.211 234.69 1 50.41 ? C5 NAG 503 C 1 
HETATM 6 C C6 NAG . . . R 6 49.391 44.998 233.203 1 51.45 ? C6 NAG 503 C 1 
HETATM 7 C C7 NAG . . . R 6 48.552 45.356 239.355 1 56.54 ? C7 NAG 503 C 1 
HETATM 8 C C8 NAG . . . R 6 48.448 45.54 240.841 1 51.39 ? C8 NAG 503 C 1 
HETATM 9 N N2 NAG . . . R 6 49.74 45.633 238.82 1 58.94 ? N2 NAG 503 C 1 
HETATM 10 O O3 NAG . . . R 6 49.99 47.902 237.137 1 56.36 ? O3 NAG 503 C 1 
HETATM 11 O O4 NAG . . . R 6 49.038 47.604 234.48 1 54.18 ? O4 NAG 503 C 1 
HETATM 12 O O5 NAG . . . R 6 49.69 44.147 235.431 1 56.14 ? O5 NAG 503 C 1 
HETATM 13 O O6 NAG . . . R 6 50.58 44.259 233.034 1 57.89 ? O6 NAG 503 C 1 
HETATM 14 O O7 NAG . . . R 6 47.573 44.99 238.704 1 54.32 ? O7 NAG 503 C 1 
HETATM 15 H H2 NAG . . . R 6 51.1 45.491 237.271 1 67.86 ? H2 NAG 503 C 1 
HETATM 16 H H3 NAG . . . R 6 48.346 46.715 236.865 1 63.66 ? H3 NAG 503 C 1 
HETATM 17 H H4 NAG . . . R 6 50.74 46.592 235 1 60.94 ? H4 NAG 503 C 1 
HETATM 18 H H5 NAG . . . R 6 48.041 45.21 234.841 1 62.86 ? H5 NAG 503 C 1 
HETATM 19 H H61 NAG . . . R 6 48.557 44.463 232.75 1 64.11 ? H61 NAG 503 C 1 
HETATM 20 H H62 NAG . . . R 6 49.482 45.963 232.704 1 64.11 ? H62 NAG 503 C 1 
HETATM 21 H H81 NAG . . . R 6 48.349 44.565 241.312 1 64.04 ? H81 NAG 503 C 1 
HETATM 22 H H82 NAG . . . R 6 49.364 46.01 241.2 1 64.04 ? H82 NAG 503 C 1 
HETATM 23 H H83 NAG . . . R 6 47.615 46.21 241.056 1 64.04 ? H83 NAG 503 C 1 
HETATM 24 H HN2 NAG . . . R 6 50.491 45.944 239.42 1 73.1 ? HN2 NAG 503 C 1 
HETATM 25 H HO3 NAG . . . R 6 50.574 47.709 237.9 1 70 ? HO3 NAG 503 C 1 
HETATM 26 H HO4 NAG . . . R 6 48.637 48.226 235.122 1 67.39 ? HO4 NAG 503 C 1 
HETATM 27 H HO6 NAG . . . R 6 50.944 44.019 233.911 1 71.84 ? HO6 NAG 503 C 1 
#
_model_server_stats.io_time_ms              59 
_model_server_stats.parse_time_ms           22 
_model_server_stats.create_model_time_ms    43 
_model_server_stats.query_time_ms           350 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           27 
#