data_8BHI # _model_server_result.job_id KOIbWojnkKkOi2xoaHHHfA _model_server_result.datetime_utc '2024-10-19 14:38:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8bhi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":501}' # _entry.id 8BHI # _exptl.entry_id 8BHI _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8BHI _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8BHI _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 F N N ? 2 H N N ? 2 J N N ? 2 L N N ? 2 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 142 A CYS 142 1_555 A SG CYS 156 A CYS 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 B SG CYS 142 B CYS 142 1_555 B SG CYS 156 B CYS 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 C SG CYS 142 C CYS 142 1_555 C SG CYS 156 C CYS 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 D SG CYS 142 D CYS 142 1_555 D SG CYS 156 D CYS 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 E SG CYS 142 E CYS 142 1_555 E SG CYS 156 E CYS 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 A ND2 ASN 205 A ASN 205 1_555 F C1 NAG . A NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale2 B ND2 ASN 205 B ASN 205 1_555 H C1 NAG . B NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale3 C ND2 ASN 205 C ASN 205 1_555 J C1 NAG . C NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale4 D ND2 ASN 205 D ASN 205 1_555 L C1 NAG . D NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale5 E ND2 ASN 205 E ASN 205 1_555 N C1 NAG . E NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 235 n n C1 O1 NAG sing 236 n n C1 O5 NAG sing 237 n n C1 H1 NAG sing 238 n n C2 C3 NAG sing 239 n n C2 N2 NAG sing 240 n n C2 H2 NAG sing 241 n n C3 C4 NAG sing 242 n n C3 O3 NAG sing 243 n n C3 H3 NAG sing 244 n n C4 C5 NAG sing 245 n n C4 O4 NAG sing 246 n n C4 H4 NAG sing 247 n n C5 C6 NAG sing 248 n n C5 O5 NAG sing 249 n n C5 H5 NAG sing 250 n n C6 O6 NAG sing 251 n n C6 H61 NAG sing 252 n n C6 H62 NAG sing 253 n n C7 C8 NAG sing 254 n n C7 N2 NAG sing 255 n n C7 O7 NAG doub 256 n n C8 H81 NAG sing 257 n n C8 H82 NAG sing 258 n n C8 H83 NAG sing 259 n n N2 HN2 NAG sing 260 n n O1 HO1 NAG sing 261 n n O3 HO3 NAG sing 262 n n O4 HO4 NAG sing 263 n n O6 HO6 NAG sing 264 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 8BHI _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 NAG A 1 501 420 NAG NAG . G 3 QKF A 1 502 421 QKF 223 . H 2 NAG B 1 501 420 NAG NAG . I 3 QKF B 1 502 421 QKF 223 . J 2 NAG C 1 501 420 NAG NAG . K 3 QKF C 1 502 421 QKF 223 . L 2 NAG D 1 501 420 NAG NAG . M 3 QKF D 1 502 421 QKF 223 . N 2 NAG E 1 501 420 NAG NAG . O 3 QKF E 1 502 421 QKF 223 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . J 2 206.587 159.754 195.572 1 106.44 ? C1 NAG 501 C 1 HETATM 2 C C2 NAG . . . J 2 207.394 158.764 194.743 1 108.21 ? C2 NAG 501 C 1 HETATM 3 C C3 NAG . . . J 2 207.803 157.564 195.575 1 107.92 ? C3 NAG 501 C 1 HETATM 4 C C4 NAG . . . J 2 208.534 158.046 196.812 1 109.53 ? C4 NAG 501 C 1 HETATM 5 C C5 NAG . . . J 2 207.688 159.06 197.566 1 105.93 ? C5 NAG 501 C 1 HETATM 6 C C6 NAG . . . J 2 208.467 159.618 198.748 1 106.23 ? C6 NAG 501 C 1 HETATM 7 C C7 NAG . . . J 2 207.132 158.472 192.347 1 106.93 ? C7 NAG 501 C 1 HETATM 8 C C8 NAG . . . J 2 206.27 157.976 191.224 1 102.41 ? C8 NAG 501 C 1 HETATM 9 N N2 NAG . . . J 2 206.65 158.325 193.579 1 105.96 ? N2 NAG 501 C 1 HETATM 10 O O3 NAG . . . J 2 208.655 156.74 194.816 1 109.07 ? O3 NAG 501 C 1 HETATM 11 O O4 NAG . . . J 2 208.819 156.949 197.648 1 107.8 ? O4 NAG 501 C 1 HETATM 12 O O5 NAG . . . J 2 207.312 160.128 196.726 1 105.54 ? O5 NAG 501 C 1 HETATM 13 O O6 NAG . . . J 2 208.78 158.576 199.646 1 109.4 ? O6 NAG 501 C 1 HETATM 14 O O7 NAG . . . J 2 208.223 158.986 192.106 1 105.2 ? O7 NAG 501 C 1 HETATM 15 H H2 NAG . . . J 2 208.308 159.259 194.421 1 105.37 ? H2 NAG 501 C 1 HETATM 16 H H3 NAG . . . J 2 206.903 157.012 195.84 1 104.78 ? H3 NAG 501 C 1 HETATM 17 H H4 NAG . . . J 2 209.463 158.518 196.496 1 105.37 ? H4 NAG 501 C 1 HETATM 18 H H5 NAG . . . J 2 206.798 158.559 197.943 1 104.57 ? H5 NAG 501 C 1 HETATM 19 H H61 NAG . . . J 2 209.369 160.108 198.383 1 104.97 ? H61 NAG 501 C 1 HETATM 20 H H62 NAG . . . J 2 207.863 160.37 199.253 1 104.74 ? H62 NAG 501 C 1 HETATM 21 H H81 NAG . . . J 2 206.05 158.801 190.546 1 103.97 ? H81 NAG 501 C 1 HETATM 22 H H82 NAG . . . J 2 206.803 157.199 190.678 1 104.32 ? H82 NAG 501 C 1 HETATM 23 H H83 NAG . . . J 2 205.352 157.557 191.634 1 103.93 ? H83 NAG 501 C 1 HETATM 24 H HN2 NAG . . . J 2 205.775 157.844 193.723 1 104.32 ? HN2 NAG 501 C 1 HETATM 25 H HO3 NAG . . . J 2 208.822 157.165 193.949 1 105.39 ? HO3 NAG 501 C 1 HETATM 26 H HO4 NAG . . . J 2 208.486 156.129 197.229 1 105.29 ? HO4 NAG 501 C 1 HETATM 27 H HO6 NAG . . . J 2 208.421 157.729 199.308 1 105.65 ? HO6 NAG 501 C 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 150 _model_server_stats.query_time_ms 572 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 27 #