data_8BHK # _model_server_result.job_id o91AYR921QHyOrlR9qgmGw _model_server_result.datetime_utc '2024-11-29 08:09:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8bhk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":501}' # _entry.id 8BHK # _exptl.entry_id 8BHK _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8BHK _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8BHK _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 F N N ? 2 H N N ? 2 J N N ? 2 L N N ? 2 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 142 A CYS 142 1_555 A SG CYS 156 A CYS 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 B SG CYS 142 B CYS 142 1_555 B SG CYS 156 B CYS 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 C SG CYS 142 C CYS 142 1_555 C SG CYS 156 C CYS 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 D SG CYS 142 D CYS 142 1_555 D SG CYS 156 D CYS 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 E SG CYS 142 E CYS 142 1_555 E SG CYS 156 E CYS 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 A ND2 ASN 205 A ASN 205 1_555 F C1 NAG . A NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale2 B ND2 ASN 205 B ASN 205 1_555 H C1 NAG . B NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale3 C ND2 ASN 205 C ASN 205 1_555 J C1 NAG . C NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale4 D ND2 ASN 205 D ASN 205 1_555 L C1 NAG . D NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale5 E ND2 ASN 205 E ASN 205 1_555 N C1 NAG . E NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 270 n n C1 O1 NAG sing 271 n n C1 O5 NAG sing 272 n n C1 H1 NAG sing 273 n n C2 C3 NAG sing 274 n n C2 N2 NAG sing 275 n n C2 H2 NAG sing 276 n n C3 C4 NAG sing 277 n n C3 O3 NAG sing 278 n n C3 H3 NAG sing 279 n n C4 C5 NAG sing 280 n n C4 O4 NAG sing 281 n n C4 H4 NAG sing 282 n n C5 C6 NAG sing 283 n n C5 O5 NAG sing 284 n n C5 H5 NAG sing 285 n n C6 O6 NAG sing 286 n n C6 H61 NAG sing 287 n n C6 H62 NAG sing 288 n n C7 C8 NAG sing 289 n n C7 N2 NAG sing 290 n n C7 O7 NAG doub 291 n n C8 H81 NAG sing 292 n n C8 H82 NAG sing 293 n n C8 H83 NAG sing 294 n n N2 HN2 NAG sing 295 n n O1 HO1 NAG sing 296 n n O3 HO3 NAG sing 297 n n O4 HO4 NAG sing 298 n n O6 HO6 NAG sing 299 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 8BHK _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 NAG A 1 501 420 NAG NAG . G 3 DZP A 1 502 421 DZP DZP . H 2 NAG B 1 501 420 NAG NAG . I 3 DZP B 1 502 421 DZP DZP . J 2 NAG C 1 501 420 NAG NAG . K 3 DZP C 1 502 421 DZP DZP . L 2 NAG D 1 501 420 NAG NAG . M 3 DZP D 1 502 421 DZP DZP . N 2 NAG E 1 501 420 NAG NAG . O 3 DZP E 1 502 421 DZP DZP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . L 2 158.281 104.813 107.485 1 54.53 ? C1 NAG 501 D 1 HETATM 2 C C2 NAG . . . L 2 159.313 103.833 108.036 1 52.43 ? C2 NAG 501 D 1 HETATM 3 C C3 NAG . . . L 2 160.583 103.843 107.201 1 53.88 ? C3 NAG 501 D 1 HETATM 4 C C4 NAG . . . L 2 160.234 103.606 105.741 1 56.4 ? C4 NAG 501 D 1 HETATM 5 C C5 NAG . . . L 2 159.171 104.594 105.274 1 51.55 ? C5 NAG 501 D 1 HETATM 6 C C6 NAG . . . L 2 158.74 104.294 103.843 1 50.02 ? C6 NAG 501 D 1 HETATM 7 C C7 NAG . . . L 2 159.208 103.423 110.434 1 51.87 ? C7 NAG 501 D 1 HETATM 8 C C8 NAG . . . L 2 159.599 103.891 111.805 1 50.76 ? C8 NAG 501 D 1 HETATM 9 N N2 NAG . . . L 2 159.621 104.171 109.413 1 50.16 ? N2 NAG 501 D 1 HETATM 10 O O3 NAG . . . L 2 161.45 102.827 107.649 1 50.19 ? O3 NAG 501 D 1 HETATM 11 O O4 NAG . . . L 2 161.391 103.746 104.946 1 55.55 ? O4 NAG 501 D 1 HETATM 12 O O5 NAG . . . L 2 158.035 104.559 106.114 1 51.09 ? O5 NAG 501 D 1 HETATM 13 O O6 NAG . . . L 2 159.835 104.462 102.97 1 54.3 ? O6 NAG 501 D 1 HETATM 14 O O7 NAG . . . L 2 158.54 102.4 110.296 1 51.82 ? O7 NAG 501 D 1 HETATM 15 H H2 NAG . . . L 2 158.89 102.83 108 1 51.16 ? H2 NAG 501 D 1 HETATM 16 H H3 NAG . . . L 2 161.065 104.813 107.321 1 51.95 ? H3 NAG 501 D 1 HETATM 17 H H4 NAG . . . L 2 159.844 102.594 105.642 1 52.06 ? H4 NAG 501 D 1 HETATM 18 H H5 NAG . . . L 2 159.599 105.596 105.3 1 51.14 ? H5 NAG 501 D 1 HETATM 19 H H61 NAG . . . L 2 158.347 103.279 103.787 1 51.16 ? H61 NAG 501 D 1 HETATM 20 H H62 NAG . . . L 2 157.941 104.978 103.555 1 51.42 ? H62 NAG 501 D 1 HETATM 21 H H81 NAG . . . L 2 158.701 104.106 112.384 1 51.14 ? H81 NAG 501 D 1 HETATM 22 H H82 NAG . . . L 2 160.177 103.114 112.304 1 51.62 ? H82 NAG 501 D 1 HETATM 23 H H83 NAG . . . L 2 160.2 104.797 111.723 1 51.41 ? H83 NAG 501 D 1 HETATM 24 H HN2 NAG . . . L 2 160.226 104.962 109.586 1 51.14 ? HN2 NAG 501 D 1 HETATM 25 H HO3 NAG . . . L 2 161.027 102.341 108.387 1 51.35 ? HO3 NAG 501 D 1 HETATM 26 H HO4 NAG . . . L 2 162.157 103.96 105.519 1 52.09 ? HO4 NAG 501 D 1 HETATM 27 H HO6 NAG . . . L 2 160.615 104.774 103.476 1 51.84 ? HO6 NAG 501 D 1 # _model_server_stats.io_time_ms 239 _model_server_stats.parse_time_ms 31 _model_server_stats.create_model_time_ms 108 _model_server_stats.query_time_ms 257 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 27 #