data_8BHK # _model_server_result.job_id Vjr2-Hxb_tQ0EOpehkGpkA _model_server_result.datetime_utc '2024-11-29 08:14:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8bhk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":502}' # _entry.id 8BHK # _exptl.entry_id 8BHK _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 284.74 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 7-CHLORO-1-METHYL-5-PHENYL-1,3-DIHYDRO-2H-1,4-BENZODIAZEPIN-2-ONE _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8BHK _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8BHK _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 I N N ? 3 K N N ? 3 M N N ? 3 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 142 A CYS 142 1_555 A SG CYS 156 A CYS 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 B SG CYS 142 B CYS 142 1_555 B SG CYS 156 B CYS 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 C SG CYS 142 C CYS 142 1_555 C SG CYS 156 C CYS 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 D SG CYS 142 D CYS 142 1_555 D SG CYS 156 D CYS 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 E SG CYS 142 E CYS 142 1_555 E SG CYS 156 E CYS 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 A ND2 ASN 205 A ASN 205 1_555 F C1 NAG . A NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale2 B ND2 ASN 205 B ASN 205 1_555 H C1 NAG . B NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale3 C ND2 ASN 205 C ASN 205 1_555 J C1 NAG . C NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale4 D ND2 ASN 205 D ASN 205 1_555 L C1 NAG . D NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale5 E ND2 ASN 205 E ASN 205 1_555 N C1 NAG . E NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? # _chem_comp.formula 'C16 H13 Cl N2 O' _chem_comp.formula_weight 284.74 _chem_comp.id DZP _chem_comp.mon_nstd_flag . _chem_comp.name 7-CHLORO-1-METHYL-5-PHENYL-1,3-DIHYDRO-2H-1,4-BENZODIAZEPIN-2-ONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 DZP doub 83 n y C1 C11 DZP sing 84 n y C1 H1 DZP sing 85 n n C2 C3 DZP sing 86 n y C2 H2 DZP sing 87 n n C3 C4 DZP doub 88 n y C3 H3 DZP sing 89 n n C4 C12 DZP sing 90 n y C4 H4 DZP sing 91 n n C5 C12 DZP sing 92 n n C5 C13 DZP sing 93 n n C5 N15 DZP doub 94 n n C6 C7 DZP doub 95 n y C6 C13 DZP sing 96 n y C6 N2 DZP sing 97 n n C7 C8 DZP sing 98 n y C7 H7 DZP sing 99 n n C8 C9 DZP doub 100 n y C8 H8 DZP sing 101 n n C9 C14 DZP sing 102 n y C9 CL DZP sing 103 n n C11 C12 DZP doub 104 n y C11 H11 DZP sing 105 n n C13 C14 DZP doub 106 n y C14 H14 DZP sing 107 n n N15 C17 DZP sing 108 n n C17 C18 DZP sing 109 n n C17 H171 DZP sing 110 n n C17 H172 DZP sing 111 n n C18 N2 DZP sing 112 n n C18 O1 DZP doub 113 n n C20 N2 DZP sing 114 n n C20 H201 DZP sing 115 n n C20 H202 DZP sing 116 n n C20 H203 DZP sing 117 n n # _atom_sites.entry_id 8BHK _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 NAG A 1 501 420 NAG NAG . G 3 DZP A 1 502 421 DZP DZP . H 2 NAG B 1 501 420 NAG NAG . I 3 DZP B 1 502 421 DZP DZP . J 2 NAG C 1 501 420 NAG NAG . K 3 DZP C 1 502 421 DZP DZP . L 2 NAG D 1 501 420 NAG NAG . M 3 DZP D 1 502 421 DZP DZP . N 2 NAG E 1 501 420 NAG NAG . O 3 DZP E 1 502 421 DZP DZP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 DZP . . . K 3 116.17 121.818 107.502 1 48.89 ? C1 DZP 502 C 1 HETATM 2 C C2 DZP . . . K 3 116.705 120.548 107.555 1 45.28 ? C2 DZP 502 C 1 HETATM 3 C C3 DZP . . . K 3 116.355 119.701 108.586 1 44.22 ? C3 DZP 502 C 1 HETATM 4 C C4 DZP . . . K 3 115.472 120.12 109.568 1 44.6 ? C4 DZP 502 C 1 HETATM 5 C C5 DZP . . . K 3 113.979 121.859 110.578 1 48.34 ? C5 DZP 502 C 1 HETATM 6 C C6 DZP . . . K 3 113.227 121.028 112.843 1 46.4 ? C6 DZP 502 C 1 HETATM 7 C C7 DZP . . . K 3 113.52 120.705 114.164 1 48.52 ? C7 DZP 502 C 1 HETATM 8 C C8 DZP . . . K 3 114.816 120.806 114.637 1 48.51 ? C8 DZP 502 C 1 HETATM 9 C C9 DZP . . . K 3 115.812 121.23 113.787 1 46.36 ? C9 DZP 502 C 1 HETATM 10 C C11 DZP . . . K 3 115.287 122.248 108.478 1 52.97 ? C11 DZP 502 C 1 HETATM 11 C C12 DZP . . . K 3 114.929 121.402 109.524 1 48.53 ? C12 DZP 502 C 1 HETATM 12 C C13 DZP . . . K 3 114.249 121.465 111.985 1 44.96 ? C13 DZP 502 C 1 HETATM 13 C C14 DZP . . . K 3 115.552 121.561 112.473 1 41.86 ? C14 DZP 502 C 1 HETATM 14 N N15 DZP . . . K 3 112.981 122.565 110.203 1 48.99 ? N15 DZP 502 C 1 HETATM 15 C C17 DZP . . . K 3 112.048 123.019 111.244 1 48 ? C17 DZP 502 C 1 HETATM 16 C C18 DZP . . . K 3 111.214 121.846 111.703 1 51.59 ? C18 DZP 502 C 1 HETATM 17 C C20 DZP . . . K 3 111.192 119.621 112.663 1 51.29 ? C20 DZP 502 C 1 HETATM 18 N N2 DZP . . . K 3 111.886 120.874 112.387 1 50.38 ? N2 DZP 502 C 1 HETATM 19 O O1 DZP . . . K 3 110.015 121.764 111.482 1 55.99 ? O1 DZP 502 C 1 HETATM 20 CL CL DZP . . . K 3 117.444 121.357 114.381 1 57.35 ? CL DZP 502 C 1 HETATM 21 H H1 DZP . . . K 3 116.439 122.492 106.69 1 46.41 ? H1 DZP 502 C 1 HETATM 22 H H2 DZP . . . K 3 117.4 120.212 106.787 1 46.38 ? H2 DZP 502 C 1 HETATM 23 H H3 DZP . . . K 3 116.773 118.697 108.633 1 46.75 ? H3 DZP 502 C 1 HETATM 24 H H4 DZP . . . K 3 115.199 119.446 110.378 1 47.5 ? H4 DZP 502 C 1 HETATM 25 H H7 DZP . . . K 3 112.737 120.37 114.842 1 48.36 ? H7 DZP 502 C 1 HETATM 26 H H8 DZP . . . K 3 115.06 120.556 115.668 1 48.17 ? H8 DZP 502 C 1 HETATM 27 H H11 DZP . . . K 3 114.869 123.252 108.429 1 48.43 ? H11 DZP 502 C 1 HETATM 28 H H14 DZP . . . K 3 116.361 121.894 111.824 1 46.49 ? H14 DZP 502 C 1 HETATM 29 H H171 DZP . . . K 3 111.417 123.758 110.753 1 47.99 ? H171 DZP 502 C 1 HETATM 30 H H172 DZP . . . K 3 112.503 123.548 112.08 1 47.85 ? H172 DZP 502 C 1 HETATM 31 H H201 DZP . . . K 3 110.58 119.678 113.562 1 47.85 ? H201 DZP 502 C 1 HETATM 32 H H202 DZP . . . K 3 110.529 119.359 111.841 1 49.21 ? H202 DZP 502 C 1 HETATM 33 H H203 DZP . . . K 3 111.88 118.787 112.79 1 48.28 ? H203 DZP 502 C 1 # _model_server_stats.io_time_ms 35 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 33 #