data_8BIG # _model_server_result.job_id fo20xJ866PpfKhUzJZArSA _model_server_result.datetime_utc '2024-11-15 22:03:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8big # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":403}' # _entry.id 8BIG # _exptl.entry_id 8BIG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.693 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NICKEL (II) ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8BIG _cell.length_a 59.06 _cell.length_b 95.9 _cell.length_c 522.99 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8BIG _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 PISA dimeric 2 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,I,J,K,AA 1 1 C,M,CA 1 4 B,E,L,S,T,BA,EA 2 1 D,N,O,P,Q,R,DA 3 1 H,Y,Z,HA 3 2 G,V,W,X,GA 4 1 F,U,FA 4 3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 1_655 x+1,y,z 1 0 0 0 1 0 0 0 1 59.06 0 0 3 'crystal symmetry operation' 3_544 -x,y-1/2,-z-1/2 -1 0 0 0 1 0 0 0 -1 0 -47.95 -261.495 4 'crystal symmetry operation' 4_555 x+1/2,-y+1/2,-z 1 0 0 0 -1 0 0 0 -1 29.53 47.95 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 J N N ? 3 O N N ? 3 P N N ? 3 T N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 302 A HIS 301 1_555 J NI NI . A NI 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? metalc ? metalc2 J NI NI . A NI 402 1_555 B NE2 HIS 302 B HIS 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.652 ? metalc ? metalc3 J NI NI . A NI 402 1_555 B NZ LYS 304 B LYS 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.768 ? metalc ? metalc4 J NI NI . A NI 402 1_555 BA O HOH . B HOH 1009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? metalc ? metalc5 C NE2 HIS 302 C HIS 301 1_555 O NI NI . D NI 402 1_465 ? ? ? ? ? ? ? ? ? ? ? ? 2.552 ? metalc ? metalc6 D NE2 HIS 302 D HIS 301 1_555 O NI NI . D NI 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.418 ? metalc ? metalc7 O NI NI . D NI 402 1_555 DA O HOH . D HOH 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? metalc ? metalc8 O NI NI . D NI 402 1_555 DA O HOH . D HOH 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? metalc ? metalc9 E NE2 HIS 302 E HIS 301 1_555 T NI NI . E NI 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? metalc ? metalc10 T NI NI . E NI 402 1_555 EA O HOH . E HOH 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.462 ? metalc ? metalc11 T NI NI . E NI 402 1_555 G NE2 HIS 302 G HIS 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? metalc ? metalc12 T NI NI . E NI 402 1_555 GA O HOH . G HOH 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? # _chem_comp.formula 'Ni 2' _chem_comp.formula_weight 58.693 _chem_comp.id NI _chem_comp.mon_nstd_flag . _chem_comp.name 'NICKEL (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8BIG _atom_sites.fract_transf_matrix[1][1] 0.016932 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010428 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.001912 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 SAH A 1 401 900 SAH SAH . J 3 NI A 1 402 4 NI NI . K 4 CL A 1 403 6 CL CL . L 2 SAH B 1 900 900 SAH SAH . M 2 SAH C 1 900 900 SAH SAH . N 2 SAH D 1 401 900 SAH SAH . O 3 NI D 1 402 1 NI NI . P 3 NI D 1 403 2 NI NI . Q 4 CL D 1 404 5 CL CL . R 5 EDO D 1 405 9 EDO EDO . S 2 SAH E 1 401 900 SAH SAH . T 3 NI E 1 402 3 NI NI . U 2 SAH F 1 900 900 SAH SAH . V 2 SAH G 1 401 900 SAH SAH . W 6 MG G 1 402 8 MG MG . X 5 EDO G 1 403 10 EDO EDO . Y 2 SAH H 1 401 900 SAH SAH . Z 4 CL H 1 402 7 CL CL . AA 7 HOH A 1 501 89 HOH HOH . AA 7 HOH A 2 502 98 HOH HOH . AA 7 HOH A 3 503 103 HOH HOH . AA 7 HOH A 4 504 28 HOH HOH . AA 7 HOH A 5 505 12 HOH HOH . AA 7 HOH A 6 506 11 HOH HOH . AA 7 HOH A 7 507 97 HOH HOH . AA 7 HOH A 8 508 49 HOH HOH . AA 7 HOH A 9 509 43 HOH HOH . AA 7 HOH A 10 510 21 HOH HOH . AA 7 HOH A 11 511 39 HOH HOH . AA 7 HOH A 12 512 100 HOH HOH . AA 7 HOH A 13 513 60 HOH HOH . AA 7 HOH A 14 514 45 HOH HOH . AA 7 HOH A 15 515 13 HOH HOH . AA 7 HOH A 16 516 102 HOH HOH . AA 7 HOH A 17 517 61 HOH HOH . AA 7 HOH A 18 518 34 HOH HOH . AA 7 HOH A 19 519 108 HOH HOH . BA 7 HOH B 1 1001 35 HOH HOH . BA 7 HOH B 2 1002 77 HOH HOH . BA 7 HOH B 3 1003 38 HOH HOH . BA 7 HOH B 4 1004 36 HOH HOH . BA 7 HOH B 5 1005 26 HOH HOH . BA 7 HOH B 6 1006 44 HOH HOH . BA 7 HOH B 7 1007 99 HOH HOH . BA 7 HOH B 8 1008 107 HOH HOH . BA 7 HOH B 9 1009 20 HOH HOH . BA 7 HOH B 10 1010 40 HOH HOH . BA 7 HOH B 11 1011 96 HOH HOH . CA 7 HOH C 1 1001 29 HOH HOH . CA 7 HOH C 2 1002 14 HOH HOH . CA 7 HOH C 3 1003 95 HOH HOH . CA 7 HOH C 4 1004 22 HOH HOH . CA 7 HOH C 5 1005 55 HOH HOH . DA 7 HOH D 1 501 88 HOH HOH . DA 7 HOH D 2 502 30 HOH HOH . DA 7 HOH D 3 503 84 HOH HOH . DA 7 HOH D 4 504 33 HOH HOH . DA 7 HOH D 5 505 37 HOH HOH . DA 7 HOH D 6 506 90 HOH HOH . DA 7 HOH D 7 507 56 HOH HOH . DA 7 HOH D 8 508 16 HOH HOH . DA 7 HOH D 9 509 17 HOH HOH . DA 7 HOH D 10 510 101 HOH HOH . EA 7 HOH E 1 501 31 HOH HOH . EA 7 HOH E 2 502 42 HOH HOH . EA 7 HOH E 3 503 32 HOH HOH . EA 7 HOH E 4 504 19 HOH HOH . FA 7 HOH F 1 1001 53 HOH HOH . FA 7 HOH F 2 1002 63 HOH HOH . FA 7 HOH F 3 1003 62 HOH HOH . FA 7 HOH F 4 1004 75 HOH HOH . GA 7 HOH G 1 501 15 HOH HOH . GA 7 HOH G 2 502 27 HOH HOH . GA 7 HOH G 3 503 93 HOH HOH . GA 7 HOH G 4 504 87 HOH HOH . GA 7 HOH G 5 505 18 HOH HOH . HA 7 HOH H 1 501 104 HOH HOH . HA 7 HOH H 2 502 23 HOH HOH . HA 7 HOH H 3 503 24 HOH HOH . HA 7 HOH H 4 504 109 HOH HOH . HA 7 HOH H 5 505 106 HOH HOH . HA 7 HOH H 6 506 41 HOH HOH . HA 7 HOH H 7 507 57 HOH HOH . HA 7 HOH H 8 508 105 HOH HOH . HA 7 HOH H 9 509 25 HOH HOH . HA 7 HOH H 10 510 83 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NI _atom_site.label_atom_id NI _atom_site.label_comp_id NI _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id P _atom_site.label_entity_id 3 _atom_site.Cartn_x 21.384 _atom_site.Cartn_y -51.683 _atom_site.Cartn_z -38.512 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 108.53 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NI _atom_site.auth_comp_id NI _atom_site.auth_seq_id 403 _atom_site.auth_asym_id D _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 44 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 260 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 1 #