data_8BIN # _model_server_result.job_id ZEp6yBeeZwn1RZ5titTPGw _model_server_result.datetime_utc '2025-01-10 16:47:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8bin # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1005}' # _entry.id 8BIN # _exptl.entry_id 8BIN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 357.837 _entity.id 3 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description 8-(4-azanylbutyl)-6-(2-chlorophenyl)-2-(methylamino)pyrido[2,3-d]pyrimidin-7-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.94 _cell.angle_gamma 90 _cell.entry_id 8BIN _cell.length_a 32.803 _cell.length_b 107.678 _cell.length_c 40.661 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8BIN _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C18 H20 Cl N5 O' _chem_comp.formula_weight 357.837 _chem_comp.id QRR _chem_comp.mon_nstd_flag . _chem_comp.name 8-(4-azanylbutyl)-6-(2-chlorophenyl)-2-(methylamino)pyrido[2,3-d]pyrimidin-7-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N C QRR sing 286 n n N C1 QRR sing 287 n n N1 C1 QRR doub 288 n y N1 C2 QRR sing 289 n y C1 N4 QRR sing 290 n y C2 C3 QRR doub 291 n y N4 C17 QRR doub 292 n y C3 C17 QRR sing 293 n y C3 C4 QRR sing 294 n n C17 N2 QRR sing 295 n n C4 C5 QRR doub 296 n n CL C11 QRR sing 297 n n N2 C13 QRR sing 298 n n N2 C12 QRR sing 299 n n C5 C12 QRR sing 300 n n C5 C6 QRR sing 301 n n C13 C14 QRR sing 302 n n C12 O QRR doub 303 n n C11 C6 QRR doub 304 n y C11 C10 QRR sing 305 n y C6 C7 QRR sing 306 n y C14 C15 QRR sing 307 n n C10 C9 QRR doub 308 n y C7 C8 QRR doub 309 n y C15 C16 QRR sing 310 n n C9 C8 QRR sing 311 n y C16 N3 QRR sing 312 n n C7 H1 QRR sing 313 n n C8 H2 QRR sing 314 n n C9 H3 QRR sing 315 n n N3 H4 QRR sing 316 n n N3 H5 QRR sing 317 n n C4 H7 QRR sing 318 n n C2 H8 QRR sing 319 n n C13 H9 QRR sing 320 n n C13 H10 QRR sing 321 n n C14 H11 QRR sing 322 n n C14 H12 QRR sing 323 n n C15 H13 QRR sing 324 n n C15 H14 QRR sing 325 n n C16 H15 QRR sing 326 n n C16 H16 QRR sing 327 n n N H17 QRR sing 328 n n C H18 QRR sing 329 n n C H19 QRR sing 330 n n C H20 QRR sing 331 n n C10 H21 QRR sing 332 n n # _atom_sites.entry_id 8BIN _atom_sites.fract_transf_matrix[1][1] 0.030485 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.01046 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009287 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026001 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 1001 1 EDO EDO . C 2 EDO A 1 1002 2 EDO EDO . D 2 EDO A 1 1003 3 EDO EDO . E 2 EDO A 1 1004 1001 EDO EDO . F 3 QRR A 1 1005 1002 QRR XXX . G 2 EDO A 1 1006 1003 EDO EDO . H 2 EDO A 1 1007 1005 EDO EDO . I 2 EDO A 1 1008 1006 EDO EDO . J 4 HOH A 1 1101 143 HOH HOH . J 4 HOH A 2 1102 145 HOH HOH . J 4 HOH A 3 1103 120 HOH HOH . J 4 HOH A 4 1104 99 HOH HOH . J 4 HOH A 5 1105 33 HOH HOH . J 4 HOH A 6 1106 62 HOH HOH . J 4 HOH A 7 1107 155 HOH HOH . J 4 HOH A 8 1108 40 HOH HOH . J 4 HOH A 9 1109 154 HOH HOH . J 4 HOH A 10 1110 70 HOH HOH . J 4 HOH A 11 1111 49 HOH HOH . J 4 HOH A 12 1112 9 HOH HOH . J 4 HOH A 13 1113 63 HOH HOH . J 4 HOH A 14 1114 53 HOH HOH . J 4 HOH A 15 1115 146 HOH HOH . J 4 HOH A 16 1116 8 HOH HOH . J 4 HOH A 17 1117 106 HOH HOH . J 4 HOH A 18 1118 123 HOH HOH . J 4 HOH A 19 1119 56 HOH HOH . J 4 HOH A 20 1120 55 HOH HOH . J 4 HOH A 21 1121 5 HOH HOH . J 4 HOH A 22 1122 32 HOH HOH . J 4 HOH A 23 1123 21 HOH HOH . J 4 HOH A 24 1124 82 HOH HOH . J 4 HOH A 25 1125 50 HOH HOH . J 4 HOH A 26 1126 27 HOH HOH . J 4 HOH A 27 1127 72 HOH HOH . J 4 HOH A 28 1128 6 HOH HOH . J 4 HOH A 29 1129 4 HOH HOH . J 4 HOH A 30 1130 90 HOH HOH . J 4 HOH A 31 1131 26 HOH HOH . J 4 HOH A 32 1132 45 HOH HOH . J 4 HOH A 33 1133 152 HOH HOH . J 4 HOH A 34 1134 73 HOH HOH . J 4 HOH A 35 1135 12 HOH HOH . J 4 HOH A 36 1136 37 HOH HOH . J 4 HOH A 37 1137 153 HOH HOH . J 4 HOH A 38 1138 41 HOH HOH . J 4 HOH A 39 1139 38 HOH HOH . J 4 HOH A 40 1140 68 HOH HOH . J 4 HOH A 41 1141 13 HOH HOH . J 4 HOH A 42 1142 78 HOH HOH . J 4 HOH A 43 1143 24 HOH HOH . J 4 HOH A 44 1144 85 HOH HOH . J 4 HOH A 45 1145 148 HOH HOH . J 4 HOH A 46 1146 92 HOH HOH . J 4 HOH A 47 1147 75 HOH HOH . J 4 HOH A 48 1148 34 HOH HOH . J 4 HOH A 49 1149 109 HOH HOH . J 4 HOH A 50 1150 149 HOH HOH . J 4 HOH A 51 1151 44 HOH HOH . J 4 HOH A 52 1152 17 HOH HOH . J 4 HOH A 53 1153 88 HOH HOH . J 4 HOH A 54 1154 94 HOH HOH . J 4 HOH A 55 1155 39 HOH HOH . J 4 HOH A 56 1156 43 HOH HOH . J 4 HOH A 57 1157 22 HOH HOH . J 4 HOH A 58 1158 76 HOH HOH . J 4 HOH A 59 1159 142 HOH HOH . J 4 HOH A 60 1160 93 HOH HOH . J 4 HOH A 61 1161 67 HOH HOH . J 4 HOH A 62 1162 144 HOH HOH . J 4 HOH A 63 1163 25 HOH HOH . J 4 HOH A 64 1164 111 HOH HOH . J 4 HOH A 65 1165 16 HOH HOH . J 4 HOH A 66 1166 15 HOH HOH . J 4 HOH A 67 1167 65 HOH HOH . J 4 HOH A 68 1168 150 HOH HOH . J 4 HOH A 69 1169 104 HOH HOH . J 4 HOH A 70 1170 77 HOH HOH . J 4 HOH A 71 1171 3 HOH HOH . J 4 HOH A 72 1172 100 HOH HOH . J 4 HOH A 73 1173 81 HOH HOH . J 4 HOH A 74 1174 14 HOH HOH . J 4 HOH A 75 1175 108 HOH HOH . J 4 HOH A 76 1176 89 HOH HOH . J 4 HOH A 77 1177 20 HOH HOH . J 4 HOH A 78 1178 31 HOH HOH . J 4 HOH A 79 1179 97 HOH HOH . J 4 HOH A 80 1180 151 HOH HOH . J 4 HOH A 81 1181 10 HOH HOH . J 4 HOH A 82 1182 18 HOH HOH . J 4 HOH A 83 1183 116 HOH HOH . J 4 HOH A 84 1184 83 HOH HOH . J 4 HOH A 85 1185 30 HOH HOH . J 4 HOH A 86 1186 11 HOH HOH . J 4 HOH A 87 1187 58 HOH HOH . J 4 HOH A 88 1188 147 HOH HOH . J 4 HOH A 89 1189 66 HOH HOH . J 4 HOH A 90 1190 57 HOH HOH . J 4 HOH A 91 1191 47 HOH HOH . J 4 HOH A 92 1192 23 HOH HOH . J 4 HOH A 93 1193 87 HOH HOH . J 4 HOH A 94 1194 74 HOH HOH . J 4 HOH A 95 1195 60 HOH HOH . J 4 HOH A 96 1196 118 HOH HOH . J 4 HOH A 97 1197 42 HOH HOH . J 4 HOH A 98 1198 125 HOH HOH . J 4 HOH A 99 1199 46 HOH HOH . J 4 HOH A 100 1200 51 HOH HOH . J 4 HOH A 101 1201 19 HOH HOH . J 4 HOH A 102 1202 113 HOH HOH . J 4 HOH A 103 1203 129 HOH HOH . J 4 HOH A 104 1204 80 HOH HOH . J 4 HOH A 105 1205 110 HOH HOH . J 4 HOH A 106 1206 36 HOH HOH . J 4 HOH A 107 1207 86 HOH HOH . J 4 HOH A 108 1208 95 HOH HOH . J 4 HOH A 109 1209 114 HOH HOH . J 4 HOH A 110 1210 91 HOH HOH . J 4 HOH A 111 1211 112 HOH HOH . J 4 HOH A 112 1212 96 HOH HOH . J 4 HOH A 113 1213 101 HOH HOH . J 4 HOH A 114 1214 127 HOH HOH . J 4 HOH A 115 1215 84 HOH HOH . J 4 HOH A 116 1216 98 HOH HOH . J 4 HOH A 117 1217 130 HOH HOH . J 4 HOH A 118 1218 107 HOH HOH . J 4 HOH A 119 1219 136 HOH HOH . J 4 HOH A 120 1220 137 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 QRR . . . F 3 -6.321 -9.482 4.815 1 12.26 ? N1 QRR 1005 A 1 HETATM 2 C C7 QRR . . . F 3 -9.738 -11.323 10.65 1 22.24 ? C7 QRR 1005 A 1 HETATM 3 C C8 QRR . . . F 3 -10.783 -11.838 11.387 1 19.86 ? C8 QRR 1005 A 1 HETATM 4 N N2 QRR . . . F 3 -5.668 -11.099 8.579 1 15.25 ? N2 QRR 1005 A 1 HETATM 5 C C9 QRR . . . F 3 -11.25 -13.111 11.16 1 20.87 ? C9 QRR 1005 A 1 HETATM 6 C C1 QRR . . . F 3 -5.123 -9.553 5.411 1 14.16 ? C1 QRR 1005 A 1 HETATM 7 C C5 QRR . . . F 3 -8.057 -11.564 8.825 1 13.35 ? C5 QRR 1005 A 1 HETATM 8 C C6 QRR . . . F 3 -9.162 -12.101 9.641 1 14.93 ? C6 QRR 1005 A 1 HETATM 9 N N3 QRR . . . F 3 -4.779 -7.6 12.567 1 50.81 ? N3 QRR 1005 A 1 HETATM 10 C C4 QRR . . . F 3 -8.276 -11.035 7.593 1 13.22 ? C4 QRR 1005 A 1 HETATM 11 C C3 QRR . . . F 3 -7.23 -10.494 6.803 1 13.59 ? C3 QRR 1005 A 1 HETATM 12 C C2 QRR . . . F 3 -7.359 -9.962 5.515 1 13.68 ? C2 QRR 1005 A 1 HETATM 13 N N4 QRR . . . F 3 -4.859 -10.058 6.631 1 15.17 ? N4 QRR 1005 A 1 HETATM 14 O O QRR . . . F 3 -6.407 -12.102 10.495 1 18.21 ? O QRR 1005 A 1 HETATM 15 C C12 QRR . . . F 3 -6.682 -11.615 9.389 1 15.41 ? C12 QRR 1005 A 1 HETATM 16 C C13 QRR . . . F 3 -4.297 -11.19 9.1 1 17.25 ? C13 QRR 1005 A 1 HETATM 17 C C14 QRR . . . F 3 -3.751 -9.896 9.659 1 22.21 ? C14 QRR 1005 A 1 HETATM 18 C C15 QRR . . . F 3 -4.617 -9.319 10.742 1 30.11 ? C15 QRR 1005 A 1 HETATM 19 C C16 QRR . . . F 3 -3.861 -8.363 11.644 1 39.87 ? C16 QRR 1005 A 1 HETATM 20 C C17 QRR . . . F 3 -5.909 -10.522 7.319 1 16.03 ? C17 QRR 1005 A 1 HETATM 21 N N QRR . . . F 3 -4.078 -9.092 4.714 1 15.01 ? N QRR 1005 A 1 HETATM 22 C C QRR . . . F 3 -2.709 -9.223 5.171 1 14.87 ? C QRR 1005 A 1 HETATM 23 C C11 QRR . . . F 3 -9.657 -13.393 9.433 1 15.89 ? C11 QRR 1005 A 1 HETATM 24 CL CL QRR . . . F 3 -8.968 -14.436 8.254 1 28.17 ? CL QRR 1005 A 1 HETATM 25 C C10 QRR . . . F 3 -10.676 -13.908 10.195 1 18.66 ? C10 QRR 1005 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 25 #