data_8BIO # _model_server_result.job_id ODr2mrIH-HDZ8DfSP8T9Ww _model_server_result.datetime_utc '2025-01-11 18:42:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8bio # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":1012}' # _entry.id 8BIO # _exptl.entry_id 8BIO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 425.835 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 8-(4-azanylbutyl)-6-[2-chloranyl-5-(trifluoromethyl)phenyl]-2-(methylamino)pyrido[2,3-d]pyrimidin-7-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.04 _cell.angle_gamma 90 _cell.entry_id 8BIO _cell.length_a 32.84 _cell.length_b 107.413 _cell.length_c 40.651 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8BIO _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id M _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C19 H19 Cl F3 N5 O' _chem_comp.formula_weight 425.835 _chem_comp.id QRD _chem_comp.mon_nstd_flag . _chem_comp.name 8-(4-azanylbutyl)-6-[2-chloranyl-5-(trifluoromethyl)phenyl]-2-(methylamino)pyrido[2,3-d]pyrimidin-7-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N C QRD sing 286 n n N C1 QRD sing 287 n n N1 C1 QRD doub 288 n y N1 C2 QRD sing 289 n y C1 N4 QRD sing 290 n y C2 C3 QRD doub 291 n y N4 C18 QRD doub 292 n y C3 C18 QRD sing 293 n y C3 C4 QRD sing 294 n n C18 N2 QRD sing 295 n n C4 C5 QRD doub 296 n n CL C12 QRD sing 297 n n N2 C14 QRD sing 298 n n N2 C13 QRD sing 299 n n C5 C13 QRD sing 300 n n C5 C6 QRD sing 301 n n C14 C15 QRD sing 302 n n C13 O QRD doub 303 n n C12 C6 QRD doub 304 n y C12 C11 QRD sing 305 n y C6 C7 QRD sing 306 n y C15 C16 QRD sing 307 n n C16 C17 QRD sing 308 n n C11 C10 QRD doub 309 n y C7 C8 QRD doub 310 n y C17 N3 QRD sing 311 n n C10 C8 QRD sing 312 n y C8 C9 QRD sing 313 n n F C9 QRD sing 314 n n C9 F2 QRD sing 315 n n C9 F1 QRD sing 316 n n C7 H1 QRD sing 317 n n N3 H2 QRD sing 318 n n N3 H3 QRD sing 319 n n C4 H5 QRD sing 320 n n C2 H6 QRD sing 321 n n C14 H7 QRD sing 322 n n C14 H8 QRD sing 323 n n C15 H9 QRD sing 324 n n C15 H10 QRD sing 325 n n C16 H11 QRD sing 326 n n C16 H12 QRD sing 327 n n C17 H13 QRD sing 328 n n C17 H14 QRD sing 329 n n N H15 QRD sing 330 n n C H16 QRD sing 331 n n C H17 QRD sing 332 n n C H18 QRD sing 333 n n C11 H19 QRD sing 334 n n C10 H20 QRD sing 335 n n # _atom_sites.entry_id 8BIO _atom_sites.fract_transf_matrix[1][1] 0.030451 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.010506 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00931 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026023 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 1001 1 EDO EDO . C 2 EDO A 1 1002 2 EDO EDO . D 2 EDO A 1 1003 3 EDO EDO . E 2 EDO A 1 1004 4 EDO EDO . F 2 EDO A 1 1005 5 EDO EDO . G 2 EDO A 1 1006 6 EDO EDO . H 2 EDO A 1 1007 7 EDO EDO . I 2 EDO A 1 1008 8 EDO EDO . J 2 EDO A 1 1009 9 EDO EDO . K 2 EDO A 1 1010 10 EDO EDO . L 2 EDO A 1 1011 1001 EDO EDO . M 3 QRD A 1 1012 1002 QRD XXX . N 2 EDO A 1 1013 1004 EDO EDO . O 2 EDO A 1 1014 1005 EDO EDO . P 4 HOH A 1 1101 210 HOH HOH . P 4 HOH A 2 1102 183 HOH HOH . P 4 HOH A 3 1103 181 HOH HOH . P 4 HOH A 4 1104 120 HOH HOH . P 4 HOH A 5 1105 165 HOH HOH . P 4 HOH A 6 1106 79 HOH HOH . P 4 HOH A 7 1107 29 HOH HOH . P 4 HOH A 8 1108 214 HOH HOH . P 4 HOH A 9 1109 133 HOH HOH . P 4 HOH A 10 1110 87 HOH HOH . P 4 HOH A 11 1111 209 HOH HOH . P 4 HOH A 12 1112 89 HOH HOH . P 4 HOH A 13 1113 136 HOH HOH . P 4 HOH A 14 1114 61 HOH HOH . P 4 HOH A 15 1115 12 HOH HOH . P 4 HOH A 16 1116 130 HOH HOH . P 4 HOH A 17 1117 55 HOH HOH . P 4 HOH A 18 1118 121 HOH HOH . P 4 HOH A 19 1119 86 HOH HOH . P 4 HOH A 20 1120 178 HOH HOH . P 4 HOH A 21 1121 39 HOH HOH . P 4 HOH A 22 1122 176 HOH HOH . P 4 HOH A 23 1123 115 HOH HOH . P 4 HOH A 24 1124 137 HOH HOH . P 4 HOH A 25 1125 145 HOH HOH . P 4 HOH A 26 1126 64 HOH HOH . P 4 HOH A 27 1127 26 HOH HOH . P 4 HOH A 28 1128 119 HOH HOH . P 4 HOH A 29 1129 172 HOH HOH . P 4 HOH A 30 1130 159 HOH HOH . P 4 HOH A 31 1131 31 HOH HOH . P 4 HOH A 32 1132 54 HOH HOH . P 4 HOH A 33 1133 7 HOH HOH . P 4 HOH A 34 1134 158 HOH HOH . P 4 HOH A 35 1135 52 HOH HOH . P 4 HOH A 36 1136 57 HOH HOH . P 4 HOH A 37 1137 25 HOH HOH . P 4 HOH A 38 1138 34 HOH HOH . P 4 HOH A 39 1139 147 HOH HOH . P 4 HOH A 40 1140 83 HOH HOH . P 4 HOH A 41 1141 71 HOH HOH . P 4 HOH A 42 1142 49 HOH HOH . P 4 HOH A 43 1143 11 HOH HOH . P 4 HOH A 44 1144 63 HOH HOH . P 4 HOH A 45 1145 132 HOH HOH . P 4 HOH A 46 1146 129 HOH HOH . P 4 HOH A 47 1147 42 HOH HOH . P 4 HOH A 48 1148 108 HOH HOH . P 4 HOH A 49 1149 188 HOH HOH . P 4 HOH A 50 1150 1 HOH HOH . P 4 HOH A 51 1151 170 HOH HOH . P 4 HOH A 52 1152 46 HOH HOH . P 4 HOH A 53 1153 125 HOH HOH . P 4 HOH A 54 1154 95 HOH HOH . P 4 HOH A 55 1155 187 HOH HOH . P 4 HOH A 56 1156 142 HOH HOH . P 4 HOH A 57 1157 139 HOH HOH . P 4 HOH A 58 1158 173 HOH HOH . P 4 HOH A 59 1159 85 HOH HOH . P 4 HOH A 60 1160 10 HOH HOH . P 4 HOH A 61 1161 153 HOH HOH . P 4 HOH A 62 1162 114 HOH HOH . P 4 HOH A 63 1163 103 HOH HOH . P 4 HOH A 64 1164 134 HOH HOH . P 4 HOH A 65 1165 59 HOH HOH . P 4 HOH A 66 1166 160 HOH HOH . P 4 HOH A 67 1167 27 HOH HOH . P 4 HOH A 68 1168 18 HOH HOH . P 4 HOH A 69 1169 80 HOH HOH . P 4 HOH A 70 1170 109 HOH HOH . P 4 HOH A 71 1171 17 HOH HOH . P 4 HOH A 72 1172 107 HOH HOH . P 4 HOH A 73 1173 33 HOH HOH . P 4 HOH A 74 1174 124 HOH HOH . P 4 HOH A 75 1175 157 HOH HOH . P 4 HOH A 76 1176 28 HOH HOH . P 4 HOH A 77 1177 47 HOH HOH . P 4 HOH A 78 1178 135 HOH HOH . P 4 HOH A 79 1179 105 HOH HOH . P 4 HOH A 80 1180 167 HOH HOH . P 4 HOH A 81 1181 211 HOH HOH . P 4 HOH A 82 1182 30 HOH HOH . P 4 HOH A 83 1183 4 HOH HOH . P 4 HOH A 84 1184 193 HOH HOH . P 4 HOH A 85 1185 35 HOH HOH . P 4 HOH A 86 1186 24 HOH HOH . P 4 HOH A 87 1187 174 HOH HOH . P 4 HOH A 88 1188 207 HOH HOH . P 4 HOH A 89 1189 194 HOH HOH . P 4 HOH A 90 1190 40 HOH HOH . P 4 HOH A 91 1191 51 HOH HOH . P 4 HOH A 92 1192 8 HOH HOH . P 4 HOH A 93 1193 45 HOH HOH . P 4 HOH A 94 1194 16 HOH HOH . P 4 HOH A 95 1195 32 HOH HOH . P 4 HOH A 96 1196 140 HOH HOH . P 4 HOH A 97 1197 122 HOH HOH . P 4 HOH A 98 1198 15 HOH HOH . P 4 HOH A 99 1199 14 HOH HOH . P 4 HOH A 100 1200 62 HOH HOH . P 4 HOH A 101 1201 156 HOH HOH . P 4 HOH A 102 1202 37 HOH HOH . P 4 HOH A 103 1203 94 HOH HOH . P 4 HOH A 104 1204 2 HOH HOH . P 4 HOH A 105 1205 151 HOH HOH . P 4 HOH A 106 1206 123 HOH HOH . P 4 HOH A 107 1207 118 HOH HOH . P 4 HOH A 108 1208 128 HOH HOH . P 4 HOH A 109 1209 74 HOH HOH . P 4 HOH A 110 1210 67 HOH HOH . P 4 HOH A 111 1211 76 HOH HOH . P 4 HOH A 112 1212 99 HOH HOH . P 4 HOH A 113 1213 6 HOH HOH . P 4 HOH A 114 1214 43 HOH HOH . P 4 HOH A 115 1215 66 HOH HOH . P 4 HOH A 116 1216 60 HOH HOH . P 4 HOH A 117 1217 213 HOH HOH . P 4 HOH A 118 1218 104 HOH HOH . P 4 HOH A 119 1219 102 HOH HOH . P 4 HOH A 120 1220 177 HOH HOH . P 4 HOH A 121 1221 21 HOH HOH . P 4 HOH A 122 1222 5 HOH HOH . P 4 HOH A 123 1223 69 HOH HOH . P 4 HOH A 124 1224 13 HOH HOH . P 4 HOH A 125 1225 162 HOH HOH . P 4 HOH A 126 1226 50 HOH HOH . P 4 HOH A 127 1227 161 HOH HOH . P 4 HOH A 128 1228 19 HOH HOH . P 4 HOH A 129 1229 117 HOH HOH . P 4 HOH A 130 1230 23 HOH HOH . P 4 HOH A 131 1231 72 HOH HOH . P 4 HOH A 132 1232 106 HOH HOH . P 4 HOH A 133 1233 73 HOH HOH . P 4 HOH A 134 1234 65 HOH HOH . P 4 HOH A 135 1235 77 HOH HOH . P 4 HOH A 136 1236 93 HOH HOH . P 4 HOH A 137 1237 184 HOH HOH . P 4 HOH A 138 1238 206 HOH HOH . P 4 HOH A 139 1239 166 HOH HOH . P 4 HOH A 140 1240 22 HOH HOH . P 4 HOH A 141 1241 75 HOH HOH . P 4 HOH A 142 1242 199 HOH HOH . P 4 HOH A 143 1243 171 HOH HOH . P 4 HOH A 144 1244 38 HOH HOH . P 4 HOH A 145 1245 20 HOH HOH . P 4 HOH A 146 1246 56 HOH HOH . P 4 HOH A 147 1247 215 HOH HOH . P 4 HOH A 148 1248 97 HOH HOH . P 4 HOH A 149 1249 58 HOH HOH . P 4 HOH A 150 1250 212 HOH HOH . P 4 HOH A 151 1251 208 HOH HOH . P 4 HOH A 152 1252 148 HOH HOH . P 4 HOH A 153 1253 92 HOH HOH . P 4 HOH A 154 1254 168 HOH HOH . P 4 HOH A 155 1255 146 HOH HOH . P 4 HOH A 156 1256 185 HOH HOH . P 4 HOH A 157 1257 101 HOH HOH . P 4 HOH A 158 1258 112 HOH HOH . P 4 HOH A 159 1259 78 HOH HOH . P 4 HOH A 160 1260 113 HOH HOH . P 4 HOH A 161 1261 91 HOH HOH . P 4 HOH A 162 1262 202 HOH HOH . P 4 HOH A 163 1263 180 HOH HOH . P 4 HOH A 164 1264 205 HOH HOH . P 4 HOH A 165 1265 100 HOH HOH . P 4 HOH A 166 1266 150 HOH HOH . P 4 HOH A 167 1267 82 HOH HOH . P 4 HOH A 168 1268 53 HOH HOH . P 4 HOH A 169 1269 141 HOH HOH . P 4 HOH A 170 1270 90 HOH HOH . P 4 HOH A 171 1271 192 HOH HOH . P 4 HOH A 172 1272 131 HOH HOH . P 4 HOH A 173 1273 201 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 QRD . . . M 3 10.134 -10.207 4.847 1 16.62 ? N1 QRD 1012 A 1 HETATM 2 C C7 QRD . . . M 3 6.366 -11.775 10.528 1 23.48 ? C7 QRD 1012 A 1 HETATM 3 C C8 QRD . . . M 3 5.309 -12.261 11.305 1 27.12 ? C8 QRD 1012 A 1 HETATM 4 N N2 QRD . . . M 3 10.641 -11.814 8.613 1 18.14 ? N2 QRD 1012 A 1 HETATM 5 C C9 QRD . . . M 3 4.576 -11.38 12.265 1 27.15 ? C9 QRD 1012 A 1 HETATM 6 C C1 QRD . . . M 3 11.325 -10.343 5.463 1 17.54 ? C1 QRD 1012 A 1 HETATM 7 C C5 QRD . . . M 3 8.233 -12.137 8.872 1 19.67 ? C5 QRD 1012 A 1 HETATM 8 C C6 QRD . . . M 3 7.084 -12.633 9.678 1 21 ? C6 QRD 1012 A 1 HETATM 9 N N3 QRD . . . M 3 14.687 -9.6 12.294 1 29.89 ? N3 QRD 1012 A 1 HETATM 10 C C4 QRD . . . M 3 8.064 -11.599 7.638 1 17.63 ? C4 QRD 1012 A 1 HETATM 11 C C3 QRD . . . M 3 9.152 -11.146 6.838 1 17.65 ? C3 QRD 1012 A 1 HETATM 12 C C2 QRD . . . M 3 9.062 -10.59 5.552 1 16.1 ? C2 QRD 1012 A 1 HETATM 13 N N4 QRD . . . M 3 11.546 -10.861 6.692 1 18.07 ? N4 QRD 1012 A 1 HETATM 14 O O QRD . . . M 3 9.854 -12.745 10.533 1 21.44 ? O QRD 1012 A 1 HETATM 15 C C13 QRD . . . M 3 9.592 -12.26 9.424 1 18.66 ? C13 QRD 1012 A 1 HETATM 16 C C14 QRD . . . M 3 12.004 -11.959 9.13 1 19.84 ? C14 QRD 1012 A 1 HETATM 17 C C15 QRD . . . M 3 12.452 -10.727 9.857 1 21.96 ? C15 QRD 1012 A 1 HETATM 18 C C16 QRD . . . M 3 13.901 -10.765 10.239 1 26.37 ? C16 QRD 1012 A 1 HETATM 19 C C17 QRD . . . M 3 14.27 -9.455 10.909 1 29.05 ? C17 QRD 1012 A 1 HETATM 20 C C18 QRD . . . M 3 10.453 -11.256 7.355 1 18.02 ? C18 QRD 1012 A 1 HETATM 21 N N QRD . . . M 3 12.4 -9.895 4.808 1 18.18 ? N QRD 1012 A 1 HETATM 22 C C QRD . . . M 3 13.738 -10.006 5.335 1 18.31 ? C QRD 1012 A 1 HETATM 23 C C12 QRD . . . M 3 6.694 -13.968 9.636 1 21.61 ? C12 QRD 1012 A 1 HETATM 24 CL CL QRD . . . M 3 7.474 -15.082 8.582 1 25.23 ? CL QRD 1012 A 1 HETATM 25 C C11 QRD . . . M 3 5.646 -14.443 10.389 1 23.07 ? C11 QRD 1012 A 1 HETATM 26 C C10 QRD . . . M 3 4.953 -13.592 11.214 1 24.7 ? C10 QRD 1012 A 1 HETATM 27 F F QRD . . . M 3 4.235 -10.317 11.73 1 31.15 ? F QRD 1012 A 1 HETATM 28 F F1 QRD . . . M 3 5.247 -11.15 13.355 1 45.98 ? F1 QRD 1012 A 1 HETATM 29 F F2 QRD . . . M 3 3.454 -11.896 12.697 1 51.07 ? F2 QRD 1012 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 29 #