data_8BIQ # _model_server_result.job_id DCVASLC-r8eGOegsGwjgcg _model_server_result.datetime_utc '2025-07-08 04:33:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8biq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":601}' # _entry.id 8BIQ # _exptl.entry_id 8BIQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 389.258 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] ethanoate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.97 _cell.angle_gamma 90 _cell.entry_id 8BIQ _cell.length_a 100.864 _cell.length_b 88.289 _cell.length_c 131.207 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8BIQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C12 H16 N5 O8 P' _chem_comp.formula_weight 389.258 _chem_comp.id 6R9 _chem_comp.mon_nstd_flag . _chem_comp.name '[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] ethanoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C01 C02 6R9 sing 1 n n O03 C02 6R9 doub 2 n n O06 P05 6R9 doub 3 n n C02 O04 6R9 sing 4 n n O04 P05 6R9 sing 5 n n N24 C23 6R9 sing 6 n n P05 O08 6R9 sing 7 n n P05 O07 6R9 sing 8 n n N17 C16 6R9 doub 9 n y N17 C18 6R9 sing 10 n y C16 N15 6R9 sing 11 n y O08 C09 6R9 sing 12 n n C23 C18 6R9 doub 13 n y C23 N22 6R9 sing 14 n y C18 C19 6R9 sing 15 n y O14 C13 6R9 sing 16 n n O14 C10 6R9 sing 17 n n N15 C19 6R9 sing 18 n y N15 C13 6R9 sing 19 n n N22 C21 6R9 doub 20 n y C19 N20 6R9 doub 21 n y C09 C10 6R9 sing 22 n n C13 C12 6R9 sing 23 n n C21 N20 6R9 sing 24 n y C10 C11 6R9 sing 25 n n C12 C11 6R9 sing 26 n n C12 O25 6R9 sing 27 n n C11 O26 6R9 sing 28 n n C01 H1 6R9 sing 29 n n C01 H2 6R9 sing 30 n n C01 H3 6R9 sing 31 n n C09 H4 6R9 sing 32 n n C09 H5 6R9 sing 33 n n C10 H6 6R9 sing 34 n n C11 H7 6R9 sing 35 n n C12 H8 6R9 sing 36 n n C13 H9 6R9 sing 37 n n C16 H10 6R9 sing 38 n n C21 H11 6R9 sing 39 n n N24 H12 6R9 sing 40 n n N24 H13 6R9 sing 41 n n O07 H14 6R9 sing 42 n n O25 H15 6R9 sing 43 n n O26 H16 6R9 sing 44 n n # _atom_sites.entry_id 8BIQ _atom_sites.fract_transf_matrix[1][1] 0.009914 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000514 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011326 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007632 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 AMP D 1 601 601 AMP AMP . F 2 AMP A 1 601 601 AMP AMP . G 3 6R9 B 1 601 601 6R9 6R9 . H 2 AMP C 1 601 601 AMP AMP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 6R9 . . . G 3 -50.5 16.693 44.194 1 56.98 ? C01 6R9 601 B 1 HETATM 2 C C02 6R9 . . . G 3 -50.304 18.064 43.618 1 56.12 ? C02 6R9 601 B 1 HETATM 3 C C09 6R9 . . . G 3 -51.726 18.49 40.155 1 43.65 ? C09 6R9 601 B 1 HETATM 4 C C10 6R9 . . . G 3 -51.982 17.312 39.263 1 43.27 ? C10 6R9 601 B 1 HETATM 5 C C11 6R9 . . . G 3 -53.446 16.946 39.116 1 43.93 ? C11 6R9 601 B 1 HETATM 6 C C12 6R9 . . . G 3 -53.312 15.512 38.599 1 44.23 ? C12 6R9 601 B 1 HETATM 7 C C13 6R9 . . . G 3 -52.13 14.985 39.373 1 44.12 ? C13 6R9 601 B 1 HETATM 8 C C16 6R9 . . . G 3 -52.633 14.587 41.832 1 46.57 ? C16 6R9 601 B 1 HETATM 9 C C18 6R9 . . . G 3 -53.242 12.544 41.808 1 48.47 ? C18 6R9 601 B 1 HETATM 10 C C19 6R9 . . . G 3 -52.943 12.882 40.501 1 47.5 ? C19 6R9 601 B 1 HETATM 11 C C21 6R9 . . . G 3 -53.455 10.882 39.787 1 51.25 ? C21 6R9 601 B 1 HETATM 12 C C23 6R9 . . . G 3 -53.685 11.227 42.068 1 50.65 ? C23 6R9 601 B 1 HETATM 13 N N15 6R9 . . . G 3 -52.559 14.196 40.519 1 45.86 ? N15 6R9 601 B 1 HETATM 14 N N17 6R9 . . . G 3 -53.031 13.636 42.64 1 47.76 ? N17 6R9 601 B 1 HETATM 15 N N20 6R9 . . . G 3 -53.035 12.091 39.427 1 49.64 ? N20 6R9 601 B 1 HETATM 16 N N22 6R9 . . . G 3 -53.798 10.407 40.994 1 51.31 ? N22 6R9 601 B 1 HETATM 17 N N24 6R9 . . . G 3 -54.025 10.76 43.281 1 51.22 ? N24 6R9 601 B 1 HETATM 18 O O03 6R9 . . . G 3 -50.391 19.044 44.326 1 62.62 ? O03 6R9 601 B 1 HETATM 19 O O04 6R9 . . . G 3 -50.035 18.102 42.285 1 48.44 ? O04 6R9 601 B 1 HETATM 20 O O06 6R9 . . . G 3 -48.273 19.548 41.107 1 43.05 ? O06 6R9 601 B 1 HETATM 21 O O07 6R9 . . . G 3 -50.469 20.679 41.8 1 42.48 ? O07 6R9 601 B 1 HETATM 22 O O08 6R9 . . . G 3 -50.338 18.88 40.045 1 43.89 ? O08 6R9 601 B 1 HETATM 23 O O14 6R9 . . . G 3 -51.409 16.11 39.815 1 43.18 ? O14 6R9 601 B 1 HETATM 24 O O25 6R9 . . . G 3 -52.955 15.437 37.257 1 44.09 ? O25 6R9 601 B 1 HETATM 25 O O26 6R9 . . . G 3 -54.067 17.862 38.225 1 43.71 ? O26 6R9 601 B 1 HETATM 26 P P05 6R9 . . . G 3 -49.73 19.449 41.404 1 44.13 ? P05 6R9 601 B 1 # _model_server_stats.io_time_ms 117 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 32 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 26 #