data_8BIR # _model_server_result.job_id RgFFk7AWh_mNZBWssXrbqw _model_server_result.datetime_utc '2024-10-20 03:52:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8bir # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 8BIR # _exptl.entry_id 8BIR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.47 _cell.angle_gamma 90 _cell.entry_id 8BIR _cell.length_a 137.06 _cell.length_b 40.13 _cell.length_c 119.29 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8BIR _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 J N N # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag n _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 306 n n N HN1 SAH sing 307 n n N HN2 SAH sing 308 n n CA CB SAH sing 309 n n CA C SAH sing 310 n n CA HA SAH sing 311 n n CB CG SAH sing 312 n n CB HB1 SAH sing 313 n n CB HB2 SAH sing 314 n n CG SD SAH sing 315 n n CG HG1 SAH sing 316 n n CG HG2 SAH sing 317 n n SD C5' SAH sing 318 n n C O SAH doub 319 n n C OXT SAH sing 320 n n OXT HXT SAH sing 321 n n C5' C4' SAH sing 322 n n C5' "H5'1" SAH sing 323 n n C5' "H5'2" SAH sing 324 n n C4' O4' SAH sing 325 n n C4' C3' SAH sing 326 n n C4' H4' SAH sing 327 n n O4' C1' SAH sing 328 n n C3' O3' SAH sing 329 n n C3' C2' SAH sing 330 n n C3' H3' SAH sing 331 n n O3' HO3' SAH sing 332 n n C2' O2' SAH sing 333 n n C2' C1' SAH sing 334 n n C2' H2' SAH sing 335 n n O2' HO2' SAH sing 336 n n C1' N9 SAH sing 337 n n C1' H1' SAH sing 338 n n N9 C8 SAH sing 339 n y N9 C4 SAH sing 340 n y C8 N7 SAH doub 341 n y C8 H8 SAH sing 342 n n N7 C5 SAH sing 343 n y C5 C6 SAH sing 344 n y C5 C4 SAH doub 345 n y C6 N6 SAH sing 346 n n C6 N1 SAH doub 347 n y N6 HN61 SAH sing 348 n n N6 HN62 SAH sing 349 n n N1 C2 SAH sing 350 n y C2 N3 SAH doub 351 n y C2 H2 SAH sing 352 n n N3 C4 SAH sing 353 n y # _atom_sites.entry_id 8BIR _atom_sites.fract_transf_matrix[1][1] 0.007296 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000315 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024919 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008391 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SAH A 1 401 900 SAH SAH . D 3 QOI A 1 402 999 QOI LIG . E 4 IOD A 1 403 1 IOD IOD . F 4 IOD A 1 404 4 IOD IOD . G 4 IOD A 1 405 6 IOD IOD . H 5 CL A 1 406 10 CL CL . I 5 CL A 1 407 13 CL CL . J 2 SAH B 1 401 900 SAH SAH . K 3 QOI B 1 402 999 QOI LIG . L 4 IOD B 1 403 2 IOD IOD . M 4 IOD B 1 404 3 IOD IOD . N 4 IOD B 1 405 5 IOD IOD . O 6 NA B 1 406 7 NA NA . P 5 CL B 1 407 8 CL CL . Q 5 CL B 1 408 9 CL CL . R 5 CL B 1 409 11 CL CL . S 5 CL B 1 410 12 CL CL . T 5 CL B 1 411 14 CL CL . U 7 HOH A 1 501 16 HOH HOH . U 7 HOH A 2 502 57 HOH HOH . U 7 HOH A 3 503 45 HOH HOH . U 7 HOH A 4 504 46 HOH HOH . U 7 HOH A 5 505 47 HOH HOH . U 7 HOH A 6 506 59 HOH HOH . U 7 HOH A 7 507 42 HOH HOH . U 7 HOH A 8 508 44 HOH HOH . U 7 HOH A 9 509 26 HOH HOH . U 7 HOH A 10 510 21 HOH HOH . U 7 HOH A 11 511 43 HOH HOH . V 7 HOH B 1 501 30 HOH HOH . V 7 HOH B 2 502 54 HOH HOH . V 7 HOH B 3 503 18 HOH HOH . V 7 HOH B 4 504 50 HOH HOH . V 7 HOH B 5 505 19 HOH HOH . V 7 HOH B 6 506 48 HOH HOH . V 7 HOH B 7 507 58 HOH HOH . V 7 HOH B 8 508 53 HOH HOH . V 7 HOH B 9 509 49 HOH HOH . V 7 HOH B 10 510 51 HOH HOH . V 7 HOH B 11 511 56 HOH HOH . V 7 HOH B 12 512 38 HOH HOH . V 7 HOH B 13 513 39 HOH HOH . V 7 HOH B 14 514 55 HOH HOH . V 7 HOH B 15 515 15 HOH HOH . V 7 HOH B 16 516 22 HOH HOH . V 7 HOH B 17 517 20 HOH HOH . V 7 HOH B 18 518 60 HOH HOH . V 7 HOH B 19 519 61 HOH HOH . V 7 HOH B 20 520 52 HOH HOH . V 7 HOH B 21 521 40 HOH HOH . V 7 HOH B 22 522 41 HOH HOH . V 7 HOH B 23 523 35 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . C 2 22.273 10.401 41.807 1 64.78 ? N SAH 401 A 1 HETATM 2 C CA SAH . . . C 2 21.909 10.252 40.363 1 64.07 ? CA SAH 401 A 1 HETATM 3 C CB SAH . . . C 2 20.582 9.502 40.177 1 63.84 ? CB SAH 401 A 1 HETATM 4 C CG SAH . . . C 2 19.503 9.824 41.205 1 63.77 ? CG SAH 401 A 1 HETATM 5 S SD SAH . . . C 2 18.007 8.821 40.979 1 63.98 ? SD SAH 401 A 1 HETATM 6 C C SAH . . . C 2 21.822 11.641 39.717 1 63.79 ? C SAH 401 A 1 HETATM 7 O O SAH . . . C 2 21.865 11.776 38.494 1 63.98 ? O SAH 401 A 1 HETATM 8 O OXT SAH . . . C 2 21.714 12.665 40.393 1 63.8 ? OXT SAH 401 A 1 HETATM 9 C C5' SAH . . . C 2 18.052 7.678 42.385 1 64.77 ? C5' SAH 401 A 1 HETATM 10 C C4' SAH . . . C 2 18.985 6.499 42.239 1 65.05 ? C4' SAH 401 A 1 HETATM 11 O O4' SAH . . . C 2 18.875 5.659 43.411 1 66.06 ? O4' SAH 401 A 1 HETATM 12 C C3' SAH . . . C 2 18.703 5.587 41.039 1 64.82 ? C3' SAH 401 A 1 HETATM 13 O O3' SAH . . . C 2 19.841 5.522 40.189 1 64.25 ? O3' SAH 401 A 1 HETATM 14 C C2' SAH . . . C 2 18.395 4.22 41.665 1 65.92 ? C2' SAH 401 A 1 HETATM 15 O O2' SAH . . . C 2 18.906 3.145 40.908 1 66.87 ? O2' SAH 401 A 1 HETATM 16 C C1' SAH . . . C 2 19.106 4.333 43.007 1 67.03 ? C1' SAH 401 A 1 HETATM 17 N N9 SAH . . . C 2 18.623 3.418 44.037 1 68.49 ? N9 SAH 401 A 1 HETATM 18 C C8 SAH . . . C 2 17.323 3.053 44.283 1 68.89 ? C8 SAH 401 A 1 HETATM 19 N N7 SAH . . . C 2 17.197 2.209 45.276 1 69.93 ? N7 SAH 401 A 1 HETATM 20 C C5 SAH . . . C 2 18.495 2 45.717 1 70.66 ? C5 SAH 401 A 1 HETATM 21 C C6 SAH . . . C 2 19.03 1.205 46.751 1 72.13 ? C6 SAH 401 A 1 HETATM 22 N N6 SAH . . . C 2 18.292 0.446 47.556 1 73.38 ? N6 SAH 401 A 1 HETATM 23 N N1 SAH . . . C 2 20.373 1.226 46.927 1 72.4 ? N1 SAH 401 A 1 HETATM 24 C C2 SAH . . . C 2 21.112 1.99 46.113 1 71.48 ? C2 SAH 401 A 1 HETATM 25 N N3 SAH . . . C 2 20.72 2.776 45.113 1 70.36 ? N3 SAH 401 A 1 HETATM 26 C C4 SAH . . . C 2 19.385 2.74 44.961 1 69.79 ? C4 SAH 401 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 26 #