data_8BIR
#
_model_server_result.job_id            v9h4goBsEGTwrLKdijRRSw 
_model_server_result.datetime_utc      '2024-10-20 03:47:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8bir 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":401}' 
#
_entry.id    8BIR 
#
_exptl.entry_id    8BIR 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              384.411 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            S-ADENOSYL-L-HOMOCYSTEINE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          92.47 
_cell.angle_gamma         90 
_cell.entry_id            8BIR 
_cell.length_a            137.06 
_cell.length_b            40.13 
_cell.length_c            119.29 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8BIR 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 J N N 
#
_chem_comp.formula           'C14 H20 N6 O5 S' 
_chem_comp.formula_weight    384.411 
_chem_comp.id                SAH 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              S-ADENOSYL-L-HOMOCYSTEINE 
_chem_comp.type              'l-peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA SAH sing 306 n n 
N HN1 SAH sing 307 n n 
N HN2 SAH sing 308 n n 
CA CB SAH sing 309 n n 
CA C SAH sing 310 n n 
CA HA SAH sing 311 n n 
CB CG SAH sing 312 n n 
CB HB1 SAH sing 313 n n 
CB HB2 SAH sing 314 n n 
CG SD SAH sing 315 n n 
CG HG1 SAH sing 316 n n 
CG HG2 SAH sing 317 n n 
SD C5' SAH sing 318 n n 
C O SAH doub 319 n n 
C OXT SAH sing 320 n n 
OXT HXT SAH sing 321 n n 
C5' C4' SAH sing 322 n n 
C5' "H5'1" SAH sing 323 n n 
C5' "H5'2" SAH sing 324 n n 
C4' O4' SAH sing 325 n n 
C4' C3' SAH sing 326 n n 
C4' H4' SAH sing 327 n n 
O4' C1' SAH sing 328 n n 
C3' O3' SAH sing 329 n n 
C3' C2' SAH sing 330 n n 
C3' H3' SAH sing 331 n n 
O3' HO3' SAH sing 332 n n 
C2' O2' SAH sing 333 n n 
C2' C1' SAH sing 334 n n 
C2' H2' SAH sing 335 n n 
O2' HO2' SAH sing 336 n n 
C1' N9 SAH sing 337 n n 
C1' H1' SAH sing 338 n n 
N9 C8 SAH sing 339 n y 
N9 C4 SAH sing 340 n y 
C8 N7 SAH doub 341 n y 
C8 H8 SAH sing 342 n n 
N7 C5 SAH sing 343 n y 
C5 C6 SAH sing 344 n y 
C5 C4 SAH doub 345 n y 
C6 N6 SAH sing 346 n n 
C6 N1 SAH doub 347 n y 
N6 HN61 SAH sing 348 n n 
N6 HN62 SAH sing 349 n n 
N1 C2 SAH sing 350 n y 
C2 N3 SAH doub 351 n y 
C2 H2 SAH sing 352 n n 
N3 C4 SAH sing 353 n y 
#
_atom_sites.entry_id                     8BIR 
_atom_sites.fract_transf_matrix[1][1]    0.007296 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000315 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.024919 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008391 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 SAH A 1 401 900 SAH SAH . 
D 3 QOI A 1 402 999 QOI LIG . 
E 4 IOD A 1 403 1 IOD IOD . 
F 4 IOD A 1 404 4 IOD IOD . 
G 4 IOD A 1 405 6 IOD IOD . 
H 5 CL A 1 406 10 CL CL . 
I 5 CL A 1 407 13 CL CL . 
J 2 SAH B 1 401 900 SAH SAH . 
K 3 QOI B 1 402 999 QOI LIG . 
L 4 IOD B 1 403 2 IOD IOD . 
M 4 IOD B 1 404 3 IOD IOD . 
N 4 IOD B 1 405 5 IOD IOD . 
O 6 NA B 1 406 7 NA NA . 
P 5 CL B 1 407 8 CL CL . 
Q 5 CL B 1 408 9 CL CL . 
R 5 CL B 1 409 11 CL CL . 
S 5 CL B 1 410 12 CL CL . 
T 5 CL B 1 411 14 CL CL . 
U 7 HOH A 1 501 16 HOH HOH . 
U 7 HOH A 2 502 57 HOH HOH . 
U 7 HOH A 3 503 45 HOH HOH . 
U 7 HOH A 4 504 46 HOH HOH . 
U 7 HOH A 5 505 47 HOH HOH . 
U 7 HOH A 6 506 59 HOH HOH . 
U 7 HOH A 7 507 42 HOH HOH . 
U 7 HOH A 8 508 44 HOH HOH . 
U 7 HOH A 9 509 26 HOH HOH . 
U 7 HOH A 10 510 21 HOH HOH . 
U 7 HOH A 11 511 43 HOH HOH . 
V 7 HOH B 1 501 30 HOH HOH . 
V 7 HOH B 2 502 54 HOH HOH . 
V 7 HOH B 3 503 18 HOH HOH . 
V 7 HOH B 4 504 50 HOH HOH . 
V 7 HOH B 5 505 19 HOH HOH . 
V 7 HOH B 6 506 48 HOH HOH . 
V 7 HOH B 7 507 58 HOH HOH . 
V 7 HOH B 8 508 53 HOH HOH . 
V 7 HOH B 9 509 49 HOH HOH . 
V 7 HOH B 10 510 51 HOH HOH . 
V 7 HOH B 11 511 56 HOH HOH . 
V 7 HOH B 12 512 38 HOH HOH . 
V 7 HOH B 13 513 39 HOH HOH . 
V 7 HOH B 14 514 55 HOH HOH . 
V 7 HOH B 15 515 15 HOH HOH . 
V 7 HOH B 16 516 22 HOH HOH . 
V 7 HOH B 17 517 20 HOH HOH . 
V 7 HOH B 18 518 60 HOH HOH . 
V 7 HOH B 19 519 61 HOH HOH . 
V 7 HOH B 20 520 52 HOH HOH . 
V 7 HOH B 21 521 40 HOH HOH . 
V 7 HOH B 22 522 41 HOH HOH . 
V 7 HOH B 23 523 35 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N SAH . . . J 2 -26.064 14.463 18.189 1 47.73 ? N SAH 401 B 1 
HETATM 2 C CA SAH . . . J 2 -25.583 14.445 19.607 1 47.78 ? CA SAH 401 B 1 
HETATM 3 C CB SAH . . . J 2 -24.571 13.316 19.85 1 47.37 ? CB SAH 401 B 1 
HETATM 4 C CG SAH . . . J 2 -23.516 13.159 18.763 1 46.61 ? CG SAH 401 B 1 
HETATM 5 S SD SAH . . . J 2 -22.325 11.841 19.134 1 46.41 ? SD SAH 401 B 1 
HETATM 6 C C SAH . . . J 2 -24.942 15.797 19.947 1 48.1 ? C SAH 401 B 1 
HETATM 7 O O SAH . . . J 2 -24.525 16.01 21.089 1 48.99 ? O SAH 401 B 1 
HETATM 8 O OXT SAH . . . J 2 -24.825 16.699 19.11 1 47.75 ? OXT SAH 401 B 1 
HETATM 9 C C5' SAH . . . J 2 -22.781 10.536 17.957 1 46.03 ? C5' SAH 401 B 1 
HETATM 10 C C4' SAH . . . J 2 -24.026 9.757 18.32 1 46.03 ? C4' SAH 401 B 1 
HETATM 11 O O4' SAH . . . J 2 -24.276 8.75 17.311 1 45.69 ? O4' SAH 401 B 1 
HETATM 12 C C3' SAH . . . J 2 -23.943 9.013 19.659 1 46.4 ? C3' SAH 401 B 1 
HETATM 13 O O3' SAH . . . J 2 -25.065 9.308 20.483 1 46.92 ? O3' SAH 401 B 1 
HETATM 14 C C2' SAH . . . J 2 -23.928 7.535 19.255 1 46.51 ? C2' SAH 401 B 1 
HETATM 15 O O2' SAH . . . J 2 -24.547 6.711 20.217 1 47.24 ? O2' SAH 401 B 1 
HETATM 16 C C1' SAH . . . J 2 -24.715 7.578 17.951 1 46.18 ? C1' SAH 401 B 1 
HETATM 17 N N9 SAH . . . J 2 -24.489 6.433 17.075 1 46.12 ? N9 SAH 401 B 1 
HETATM 18 C C8 SAH . . . J 2 -23.302 5.773 16.869 1 46.22 ? C8 SAH 401 B 1 
HETATM 19 N N7 SAH . . . J 2 -23.4 4.773 16.03 1 46.45 ? N7 SAH 401 B 1 
HETATM 20 C C5 SAH . . . J 2 -24.734 4.771 15.653 1 46.5 ? C5 SAH 401 B 1 
HETATM 21 C C6 SAH . . . J 2 -25.469 3.95 14.776 1 46.73 ? C6 SAH 401 B 1 
HETATM 22 N N6 SAH . . . J 2 -24.948 2.937 14.091 1 46.76 ? N6 SAH 401 B 1 
HETATM 23 N N1 SAH . . . J 2 -26.786 4.223 14.626 1 47.15 ? N1 SAH 401 B 1 
HETATM 24 C C2 SAH . . . J 2 -27.316 5.242 15.314 1 46.67 ? C2 SAH 401 B 1 
HETATM 25 N N3 SAH . . . J 2 -26.725 6.077 16.163 1 46.52 ? N3 SAH 401 B 1 
HETATM 26 C C4 SAH . . . J 2 -25.418 5.788 16.294 1 46.42 ? C4 SAH 401 B 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    24 
_model_server_stats.query_time_ms           272 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           26 
#