data_8BIR # _model_server_result.job_id zIXgjxmkG0jG_WB1UTfP3g _model_server_result.datetime_utc '2024-10-20 03:35:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8bir # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":402}' # _entry.id 8BIR # _exptl.entry_id 8BIR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 256.21 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,3,8-tris(oxidanyl)anthracene-9,10-dione _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.47 _cell.angle_gamma 90 _cell.entry_id 8BIR _cell.length_a 137.06 _cell.length_b 40.13 _cell.length_c 119.29 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8BIR _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 K N N # _chem_comp.formula 'C14 H8 O5' _chem_comp.formula_weight 256.21 _chem_comp.id QOI _chem_comp.mon_nstd_flag . _chem_comp.name 1,3,8-tris(oxidanyl)anthracene-9,10-dione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O19 C12 QOI sing 277 n n C12 C11 QOI doub 278 n y C12 C13 QOI sing 279 n y C11 C9 QOI sing 280 n y O16 C10 QOI doub 281 n n C13 C14 QOI doub 282 n y C9 C10 QOI sing 283 n n C9 C8 QOI doub 284 n y C10 C4 QOI sing 285 n n C14 C8 QOI sing 286 n y C14 O18 QOI sing 287 n n C8 C7 QOI sing 288 n n C4 C5 QOI doub 289 n y C4 C3 QOI sing 290 n y C5 C6 QOI sing 291 n y C7 C3 QOI sing 292 n n C7 O15 QOI doub 293 n n C3 C2 QOI doub 294 n y C6 C1 QOI doub 295 n y C2 C1 QOI sing 296 n y C2 O17 QOI sing 297 n n C5 H1 QOI sing 298 n n C6 H2 QOI sing 299 n n C13 H3 QOI sing 300 n n C11 H4 QOI sing 301 n n O19 H5 QOI sing 302 n n O18 H6 QOI sing 303 n n C1 H7 QOI sing 304 n n O17 H8 QOI sing 305 n n # _atom_sites.entry_id 8BIR _atom_sites.fract_transf_matrix[1][1] 0.007296 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000315 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024919 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008391 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SAH A 1 401 900 SAH SAH . D 3 QOI A 1 402 999 QOI LIG . E 4 IOD A 1 403 1 IOD IOD . F 4 IOD A 1 404 4 IOD IOD . G 4 IOD A 1 405 6 IOD IOD . H 5 CL A 1 406 10 CL CL . I 5 CL A 1 407 13 CL CL . J 2 SAH B 1 401 900 SAH SAH . K 3 QOI B 1 402 999 QOI LIG . L 4 IOD B 1 403 2 IOD IOD . M 4 IOD B 1 404 3 IOD IOD . N 4 IOD B 1 405 5 IOD IOD . O 6 NA B 1 406 7 NA NA . P 5 CL B 1 407 8 CL CL . Q 5 CL B 1 408 9 CL CL . R 5 CL B 1 409 11 CL CL . S 5 CL B 1 410 12 CL CL . T 5 CL B 1 411 14 CL CL . U 7 HOH A 1 501 16 HOH HOH . U 7 HOH A 2 502 57 HOH HOH . U 7 HOH A 3 503 45 HOH HOH . U 7 HOH A 4 504 46 HOH HOH . U 7 HOH A 5 505 47 HOH HOH . U 7 HOH A 6 506 59 HOH HOH . U 7 HOH A 7 507 42 HOH HOH . U 7 HOH A 8 508 44 HOH HOH . U 7 HOH A 9 509 26 HOH HOH . U 7 HOH A 10 510 21 HOH HOH . U 7 HOH A 11 511 43 HOH HOH . V 7 HOH B 1 501 30 HOH HOH . V 7 HOH B 2 502 54 HOH HOH . V 7 HOH B 3 503 18 HOH HOH . V 7 HOH B 4 504 50 HOH HOH . V 7 HOH B 5 505 19 HOH HOH . V 7 HOH B 6 506 48 HOH HOH . V 7 HOH B 7 507 58 HOH HOH . V 7 HOH B 8 508 53 HOH HOH . V 7 HOH B 9 509 49 HOH HOH . V 7 HOH B 10 510 51 HOH HOH . V 7 HOH B 11 511 56 HOH HOH . V 7 HOH B 12 512 38 HOH HOH . V 7 HOH B 13 513 39 HOH HOH . V 7 HOH B 14 514 55 HOH HOH . V 7 HOH B 15 515 15 HOH HOH . V 7 HOH B 16 516 22 HOH HOH . V 7 HOH B 17 517 20 HOH HOH . V 7 HOH B 18 518 60 HOH HOH . V 7 HOH B 19 519 61 HOH HOH . V 7 HOH B 20 520 52 HOH HOH . V 7 HOH B 21 521 40 HOH HOH . V 7 HOH B 22 522 41 HOH HOH . V 7 HOH B 23 523 35 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 QOI . . . K 3 -14.89 19.108 21.867 1 77.94 ? C4 QOI 402 B 1 HETATM 2 C C5 QOI . . . K 3 -14.064 20.088 22.433 1 77.58 ? C5 QOI 402 B 1 HETATM 3 C C6 QOI . . . K 3 -14.357 21.442 22.282 1 78.34 ? C6 QOI 402 B 1 HETATM 4 C C7 QOI . . . K 3 -16.848 18.515 20.566 1 78.64 ? C7 QOI 402 B 1 HETATM 5 C C8 QOI . . . K 3 -16.536 17.156 20.729 1 78.2 ? C8 QOI 402 B 1 HETATM 6 C C10 QOI . . . K 3 -14.582 17.753 22.029 1 77.51 ? C10 QOI 402 B 1 HETATM 7 C C13 QOI . . . K 3 -17.039 14.801 20.331 1 77.71 ? C13 QOI 402 B 1 HETATM 8 O O16 QOI . . . K 3 -13.584 17.421 22.671 1 77.94 ? O16 QOI 402 B 1 HETATM 9 C C9 QOI . . . K 3 -15.405 16.777 21.459 1 77.39 ? C9 QOI 402 B 1 HETATM 10 C C11 QOI . . . K 3 -15.102 15.417 21.618 1 76.88 ? C11 QOI 402 B 1 HETATM 11 C C12 QOI . . . K 3 -15.911 14.427 21.06 1 77.4 ? C12 QOI 402 B 1 HETATM 12 O O19 QOI . . . K 3 -15.593 13.11 21.235 1 76.31 ? O19 QOI 402 B 1 HETATM 13 C C14 QOI . . . K 3 -17.337 16.153 20.174 1 78.17 ? C14 QOI 402 B 1 HETATM 14 O O18 QOI . . . K 3 -18.431 16.549 19.474 1 79.96 ? O18 QOI 402 B 1 HETATM 15 O O15 QOI . . . K 3 -17.845 18.848 19.927 1 78.68 ? O15 QOI 402 B 1 HETATM 16 C C3 QOI . . . K 3 -16.021 19.494 21.136 1 78.52 ? C3 QOI 402 B 1 HETATM 17 C C1 QOI . . . K 3 -15.479 21.835 21.56 1 79.11 ? C1 QOI 402 B 1 HETATM 18 C C2 QOI . . . K 3 -16.3 20.862 20.995 1 79.16 ? C2 QOI 402 B 1 HETATM 19 O O17 QOI . . . K 3 -17.407 21.212 20.285 1 79.89 ? O17 QOI 402 B 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 343 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 19 #