data_8BIS # _model_server_result.job_id Njbbl8A9lNjdgBKsXJsr7Q _model_server_result.datetime_utc '2024-11-15 14:56:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8bis # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":501}' # _entry.id 8BIS # _exptl.entry_id 8BIS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 115.13 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-2-aminopent-4-enoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8BIS _cell.length_a 157.452 _cell.length_b 157.452 _cell.length_c 93.199 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8BIS _symmetry.cell_setting ? _symmetry.Int_Tables_number 150 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 3 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_556 -x,-x+y,-z+1 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 93.199 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 230 C LYS 230 1_555 C C4A PLP . C PLP 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? covale ? covale2 B OH TYR 133 A TYR 133 1_555 D CB 2AG . A 2AG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.378 ? covale ? covale3 B NZ LYS 230 A LYS 230 1_555 E C4A PLP . A PLP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? # _chem_comp.formula 'C5 H9 N O2' _chem_comp.formula_weight 115.13 _chem_comp.id 2AG _chem_comp.mon_nstd_flag n _chem_comp.name '(2S)-2-aminopent-4-enoic acid' _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms L-allylglycine # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1E C1A 2AG doub 1 n n C1A H1A 2AG sing 2 n n C1A H1AA 2AG sing 3 n n CB C1E 2AG sing 4 n n C1E H1E 2AG sing 5 n n CA CB 2AG sing 6 n n CB HB2 2AG sing 7 n n CB HB3 2AG sing 8 n n C CA 2AG sing 9 n n CA N 2AG sing 10 n n CA HA 2AG sing 11 n n O C 2AG doub 12 n n C OXT 2AG sing 13 n n OXT HXT 2AG sing 14 n n N H 2AG sing 15 n n N H2 2AG sing 16 n n # _atom_sites.entry_id 8BIS _atom_sites.fract_transf_matrix[1][1] 0.006351 _atom_sites.fract_transf_matrix[1][2] 0.003667 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007334 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01073 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PLP C 1 501 519 PLP PLP . D 3 2AG A 1 501 520 2AG 2AG . E 2 PLP A 1 502 519 PLP PLP . F 4 HOH C 1 601 217 HOH HOH . F 4 HOH C 2 602 251 HOH HOH . F 4 HOH C 3 603 201 HOH HOH . F 4 HOH C 4 604 260 HOH HOH . F 4 HOH C 5 605 66 HOH HOH . F 4 HOH C 6 606 312 HOH HOH . F 4 HOH C 7 607 145 HOH HOH . F 4 HOH C 8 608 231 HOH HOH . F 4 HOH C 9 609 14 HOH HOH . F 4 HOH C 10 610 2 HOH HOH . F 4 HOH C 11 611 165 HOH HOH . F 4 HOH C 12 612 44 HOH HOH . F 4 HOH C 13 613 209 HOH HOH . F 4 HOH C 14 614 257 HOH HOH . F 4 HOH C 15 615 97 HOH HOH . F 4 HOH C 16 616 56 HOH HOH . F 4 HOH C 17 617 34 HOH HOH . F 4 HOH C 18 618 5 HOH HOH . F 4 HOH C 19 619 20 HOH HOH . F 4 HOH C 20 620 41 HOH HOH . F 4 HOH C 21 621 203 HOH HOH . F 4 HOH C 22 622 10 HOH HOH . F 4 HOH C 23 623 186 HOH HOH . F 4 HOH C 24 624 329 HOH HOH . F 4 HOH C 25 625 121 HOH HOH . F 4 HOH C 26 626 243 HOH HOH . F 4 HOH C 27 627 54 HOH HOH . F 4 HOH C 28 628 81 HOH HOH . F 4 HOH C 29 629 206 HOH HOH . F 4 HOH C 30 630 8 HOH HOH . F 4 HOH C 31 631 330 HOH HOH . F 4 HOH C 32 632 296 HOH HOH . F 4 HOH C 33 633 71 HOH HOH . F 4 HOH C 34 634 79 HOH HOH . F 4 HOH C 35 635 94 HOH HOH . F 4 HOH C 36 636 7 HOH HOH . F 4 HOH C 37 637 208 HOH HOH . F 4 HOH C 38 638 213 HOH HOH . F 4 HOH C 39 639 202 HOH HOH . F 4 HOH C 40 640 24 HOH HOH . F 4 HOH C 41 641 58 HOH HOH . F 4 HOH C 42 642 156 HOH HOH . F 4 HOH C 43 643 207 HOH HOH . F 4 HOH C 44 644 149 HOH HOH . F 4 HOH C 45 645 102 HOH HOH . F 4 HOH C 46 646 185 HOH HOH . F 4 HOH C 47 647 122 HOH HOH . F 4 HOH C 48 648 297 HOH HOH . F 4 HOH C 49 649 277 HOH HOH . F 4 HOH C 50 650 32 HOH HOH . F 4 HOH C 51 651 1 HOH HOH . F 4 HOH C 52 652 31 HOH HOH . F 4 HOH C 53 653 226 HOH HOH . F 4 HOH C 54 654 159 HOH HOH . F 4 HOH C 55 655 178 HOH HOH . F 4 HOH C 56 656 223 HOH HOH . F 4 HOH C 57 657 109 HOH HOH . F 4 HOH C 58 658 11 HOH HOH . F 4 HOH C 59 659 316 HOH HOH . F 4 HOH C 60 660 233 HOH HOH . F 4 HOH C 61 661 299 HOH HOH . F 4 HOH C 62 662 65 HOH HOH . F 4 HOH C 63 663 100 HOH HOH . F 4 HOH C 64 664 52 HOH HOH . F 4 HOH C 65 665 130 HOH HOH . F 4 HOH C 66 666 283 HOH HOH . F 4 HOH C 67 667 60 HOH HOH . F 4 HOH C 68 668 75 HOH HOH . F 4 HOH C 69 669 4 HOH HOH . F 4 HOH C 70 670 247 HOH HOH . F 4 HOH C 71 671 88 HOH HOH . F 4 HOH C 72 672 119 HOH HOH . F 4 HOH C 73 673 53 HOH HOH . F 4 HOH C 74 674 212 HOH HOH . F 4 HOH C 75 675 218 HOH HOH . F 4 HOH C 76 676 210 HOH HOH . F 4 HOH C 77 677 234 HOH HOH . F 4 HOH C 78 678 235 HOH HOH . F 4 HOH C 79 679 40 HOH HOH . F 4 HOH C 80 680 103 HOH HOH . F 4 HOH C 81 681 240 HOH HOH . F 4 HOH C 82 682 250 HOH HOH . F 4 HOH C 83 683 21 HOH HOH . F 4 HOH C 84 684 239 HOH HOH . F 4 HOH C 85 685 140 HOH HOH . F 4 HOH C 86 686 179 HOH HOH . F 4 HOH C 87 687 259 HOH HOH . F 4 HOH C 88 688 128 HOH HOH . F 4 HOH C 89 689 76 HOH HOH . F 4 HOH C 90 690 50 HOH HOH . F 4 HOH C 91 691 228 HOH HOH . F 4 HOH C 92 692 166 HOH HOH . F 4 HOH C 93 693 69 HOH HOH . F 4 HOH C 94 694 230 HOH HOH . F 4 HOH C 95 695 117 HOH HOH . F 4 HOH C 96 696 197 HOH HOH . F 4 HOH C 97 697 249 HOH HOH . F 4 HOH C 98 698 294 HOH HOH . F 4 HOH C 99 699 293 HOH HOH . F 4 HOH C 100 700 61 HOH HOH . F 4 HOH C 101 701 255 HOH HOH . F 4 HOH C 102 702 151 HOH HOH . F 4 HOH C 103 703 184 HOH HOH . F 4 HOH C 104 704 22 HOH HOH . F 4 HOH C 105 705 78 HOH HOH . F 4 HOH C 106 706 37 HOH HOH . F 4 HOH C 107 707 59 HOH HOH . F 4 HOH C 108 708 267 HOH HOH . F 4 HOH C 109 709 236 HOH HOH . F 4 HOH C 110 710 113 HOH HOH . F 4 HOH C 111 711 129 HOH HOH . F 4 HOH C 112 712 242 HOH HOH . F 4 HOH C 113 713 13 HOH HOH . F 4 HOH C 114 714 163 HOH HOH . F 4 HOH C 115 715 227 HOH HOH . F 4 HOH C 116 716 272 HOH HOH . F 4 HOH C 117 717 310 HOH HOH . F 4 HOH C 118 718 187 HOH HOH . F 4 HOH C 119 719 174 HOH HOH . F 4 HOH C 120 720 57 HOH HOH . F 4 HOH C 121 721 188 HOH HOH . F 4 HOH C 122 722 46 HOH HOH . F 4 HOH C 123 723 263 HOH HOH . F 4 HOH C 124 724 45 HOH HOH . F 4 HOH C 125 725 125 HOH HOH . F 4 HOH C 126 726 253 HOH HOH . F 4 HOH C 127 727 315 HOH HOH . F 4 HOH C 128 728 29 HOH HOH . F 4 HOH C 129 729 215 HOH HOH . F 4 HOH C 130 730 110 HOH HOH . F 4 HOH C 131 731 152 HOH HOH . F 4 HOH C 132 732 276 HOH HOH . F 4 HOH C 133 733 147 HOH HOH . F 4 HOH C 134 734 291 HOH HOH . F 4 HOH C 135 735 18 HOH HOH . F 4 HOH C 136 736 181 HOH HOH . F 4 HOH C 137 737 146 HOH HOH . F 4 HOH C 138 738 289 HOH HOH . F 4 HOH C 139 739 192 HOH HOH . F 4 HOH C 140 740 138 HOH HOH . F 4 HOH C 141 741 168 HOH HOH . F 4 HOH C 142 742 313 HOH HOH . F 4 HOH C 143 743 318 HOH HOH . G 4 HOH A 1 601 17 HOH HOH . G 4 HOH A 2 602 176 HOH HOH . G 4 HOH A 3 603 120 HOH HOH . G 4 HOH A 4 604 27 HOH HOH . G 4 HOH A 5 605 216 HOH HOH . G 4 HOH A 6 606 303 HOH HOH . G 4 HOH A 7 607 115 HOH HOH . G 4 HOH A 8 608 244 HOH HOH . G 4 HOH A 9 609 9 HOH HOH . G 4 HOH A 10 610 193 HOH HOH . G 4 HOH A 11 611 35 HOH HOH . G 4 HOH A 12 612 252 HOH HOH . G 4 HOH A 13 613 49 HOH HOH . G 4 HOH A 14 614 28 HOH HOH . G 4 HOH A 15 615 328 HOH HOH . G 4 HOH A 16 616 82 HOH HOH . G 4 HOH A 17 617 300 HOH HOH . G 4 HOH A 18 618 87 HOH HOH . G 4 HOH A 19 619 170 HOH HOH . G 4 HOH A 20 620 241 HOH HOH . G 4 HOH A 21 621 23 HOH HOH . G 4 HOH A 22 622 214 HOH HOH . G 4 HOH A 23 623 220 HOH HOH . G 4 HOH A 24 624 150 HOH HOH . G 4 HOH A 25 625 16 HOH HOH . G 4 HOH A 26 626 269 HOH HOH . G 4 HOH A 27 627 284 HOH HOH . G 4 HOH A 28 628 38 HOH HOH . G 4 HOH A 29 629 74 HOH HOH . G 4 HOH A 30 630 211 HOH HOH . G 4 HOH A 31 631 222 HOH HOH . G 4 HOH A 32 632 6 HOH HOH . G 4 HOH A 33 633 33 HOH HOH . G 4 HOH A 34 634 189 HOH HOH . G 4 HOH A 35 635 36 HOH HOH . G 4 HOH A 36 636 39 HOH HOH . G 4 HOH A 37 637 15 HOH HOH . G 4 HOH A 38 638 43 HOH HOH . G 4 HOH A 39 639 73 HOH HOH . G 4 HOH A 40 640 89 HOH HOH . G 4 HOH A 41 641 72 HOH HOH . G 4 HOH A 42 642 261 HOH HOH . G 4 HOH A 43 643 68 HOH HOH . G 4 HOH A 44 644 148 HOH HOH . G 4 HOH A 45 645 157 HOH HOH . G 4 HOH A 46 646 191 HOH HOH . G 4 HOH A 47 647 175 HOH HOH . G 4 HOH A 48 648 308 HOH HOH . G 4 HOH A 49 649 51 HOH HOH . G 4 HOH A 50 650 143 HOH HOH . G 4 HOH A 51 651 266 HOH HOH . G 4 HOH A 52 652 136 HOH HOH . G 4 HOH A 53 653 281 HOH HOH . G 4 HOH A 54 654 131 HOH HOH . G 4 HOH A 55 655 70 HOH HOH . G 4 HOH A 56 656 48 HOH HOH . G 4 HOH A 57 657 323 HOH HOH . G 4 HOH A 58 658 123 HOH HOH . G 4 HOH A 59 659 98 HOH HOH . G 4 HOH A 60 660 246 HOH HOH . G 4 HOH A 61 661 83 HOH HOH . G 4 HOH A 62 662 101 HOH HOH . G 4 HOH A 63 663 19 HOH HOH . G 4 HOH A 64 664 3 HOH HOH . G 4 HOH A 65 665 134 HOH HOH . G 4 HOH A 66 666 279 HOH HOH . G 4 HOH A 67 667 47 HOH HOH . G 4 HOH A 68 668 108 HOH HOH . G 4 HOH A 69 669 26 HOH HOH . G 4 HOH A 70 670 124 HOH HOH . G 4 HOH A 71 671 90 HOH HOH . G 4 HOH A 72 672 95 HOH HOH . G 4 HOH A 73 673 137 HOH HOH . G 4 HOH A 74 674 172 HOH HOH . G 4 HOH A 75 675 221 HOH HOH . G 4 HOH A 76 676 325 HOH HOH . G 4 HOH A 77 677 64 HOH HOH . G 4 HOH A 78 678 12 HOH HOH . G 4 HOH A 79 679 92 HOH HOH . G 4 HOH A 80 680 63 HOH HOH . G 4 HOH A 81 681 160 HOH HOH . G 4 HOH A 82 682 286 HOH HOH . G 4 HOH A 83 683 42 HOH HOH . G 4 HOH A 84 684 85 HOH HOH . G 4 HOH A 85 685 118 HOH HOH . G 4 HOH A 86 686 135 HOH HOH . G 4 HOH A 87 687 25 HOH HOH . G 4 HOH A 88 688 258 HOH HOH . G 4 HOH A 89 689 232 HOH HOH . G 4 HOH A 90 690 153 HOH HOH . G 4 HOH A 91 691 106 HOH HOH . G 4 HOH A 92 692 132 HOH HOH . G 4 HOH A 93 693 162 HOH HOH . G 4 HOH A 94 694 182 HOH HOH . G 4 HOH A 95 695 67 HOH HOH . G 4 HOH A 96 696 141 HOH HOH . G 4 HOH A 97 697 311 HOH HOH . G 4 HOH A 98 698 238 HOH HOH . G 4 HOH A 99 699 256 HOH HOH . G 4 HOH A 100 700 271 HOH HOH . G 4 HOH A 101 701 30 HOH HOH . G 4 HOH A 102 702 229 HOH HOH . G 4 HOH A 103 703 158 HOH HOH . G 4 HOH A 104 704 91 HOH HOH . G 4 HOH A 105 705 161 HOH HOH . G 4 HOH A 106 706 180 HOH HOH . G 4 HOH A 107 707 144 HOH HOH . G 4 HOH A 108 708 86 HOH HOH . G 4 HOH A 109 709 111 HOH HOH . G 4 HOH A 110 710 245 HOH HOH . G 4 HOH A 111 711 77 HOH HOH . G 4 HOH A 112 712 305 HOH HOH . G 4 HOH A 113 713 280 HOH HOH . G 4 HOH A 114 714 278 HOH HOH . G 4 HOH A 115 715 99 HOH HOH . G 4 HOH A 116 716 298 HOH HOH . G 4 HOH A 117 717 93 HOH HOH . G 4 HOH A 118 718 317 HOH HOH . G 4 HOH A 119 719 287 HOH HOH . G 4 HOH A 120 720 84 HOH HOH . G 4 HOH A 121 721 326 HOH HOH . G 4 HOH A 122 722 171 HOH HOH . G 4 HOH A 123 723 205 HOH HOH . G 4 HOH A 124 724 320 HOH HOH . G 4 HOH A 125 725 107 HOH HOH . G 4 HOH A 126 726 324 HOH HOH . G 4 HOH A 127 727 199 HOH HOH . G 4 HOH A 128 728 183 HOH HOH . G 4 HOH A 129 729 319 HOH HOH . G 4 HOH A 130 730 200 HOH HOH . G 4 HOH A 131 731 321 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1A 2AG . . . D 3 -22.999 58.711 28.102 0.71 55.73 ? C1A 2AG 501 A 1 HETATM 2 C C1E 2AG . . . D 3 -22.874 59.086 26.856 0.71 56.67 ? C1E 2AG 501 A 1 HETATM 3 C CB 2AG . . . D 3 -22.795 60.595 26.518 0.71 56.53 ? CB 2AG 501 A 1 HETATM 4 C CA 2AG . . . D 3 -22.23 61.38 27.702 0.71 43.62 ? CA 2AG 501 A 1 HETATM 5 C C 2AG . . . D 3 -20.726 61.168 27.835 0.71 53.92 ? C 2AG 501 A 1 HETATM 6 O O 2AG . . . D 3 -19.947 61.956 27.256 0.71 52.44 ? O 2AG 501 A 1 HETATM 7 O OXT 2AG . . . D 3 -20.272 60.21 28.548 0.71 45.38 ? OXT 2AG 501 A 1 HETATM 8 N N 2AG . . . D 3 -22.465 62.783 27.55 0.71 46.42 ? N 2AG 501 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 248 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 8 #