data_8BIU
#
_model_server_result.job_id            AW36OFfI6-T1tZeDVdD67A 
_model_server_result.datetime_utc      '2024-12-16 12:53:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8biu 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":501}' 
#
_entry.id    8BIU 
#
_exptl.entry_id    8BIU 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              247.142 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "PYRIDOXAL-5'-PHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            8BIU 
_cell.length_a            157.737 
_cell.length_b            157.737 
_cell.length_c            93.401 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8BIU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        150 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 3 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 6_555 -x,-x+y,-z -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A NZ LYS 230 G LYS 230 1_555 C C4A PLP . G PLP 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? 
covale ? covale2 B NZ LYS 230 A LYS 230 1_555 E C4A PLP . A PLP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.428 ? 
#
_chem_comp.formula           'C8 H10 N O6 P' 
_chem_comp.formula_weight    247.142 
_chem_comp.id                PLP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "PYRIDOXAL-5'-PHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'VITAMIN B6 Phosphate' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 PLP doub 272 n y 
N1 C6 PLP sing 273 n y 
C2 C2A PLP sing 274 n n 
C2 C3 PLP sing 275 n y 
C2A H2A1 PLP sing 276 n n 
C2A H2A2 PLP sing 277 n n 
C2A H2A3 PLP sing 278 n n 
C3 O3 PLP sing 279 n n 
C3 C4 PLP doub 280 n y 
O3 HO3 PLP sing 281 n n 
C4 C4A PLP sing 282 n n 
C4 C5 PLP sing 283 n y 
C4A O4A PLP doub 284 n n 
C4A H4A PLP sing 285 n n 
C5 C6 PLP doub 286 n y 
C5 C5A PLP sing 287 n n 
C6 H6 PLP sing 288 n n 
C5A O4P PLP sing 289 n n 
C5A H5A1 PLP sing 290 n n 
C5A H5A2 PLP sing 291 n n 
O4P P PLP sing 292 n n 
P O1P PLP doub 293 n n 
P O2P PLP sing 294 n n 
P O3P PLP sing 295 n n 
O2P HOP2 PLP sing 296 n n 
O3P HOP3 PLP sing 297 n n 
#
_atom_sites.entry_id                     8BIU 
_atom_sites.fract_transf_matrix[1][1]    0.00634 
_atom_sites.fract_transf_matrix[1][2]    0.00366 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00732 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010707 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 PLP G 1 501 501 PLP PLP . 
D 3 2KT A 1 601 601 2KT 2KT . 
E 2 PLP A 1 602 501 PLP PLP . 
F 4 HOH G 1 601 126 HOH HOH . 
F 4 HOH G 2 602 44 HOH HOH . 
F 4 HOH G 3 603 100 HOH HOH . 
F 4 HOH G 4 604 32 HOH HOH . 
F 4 HOH G 5 605 71 HOH HOH . 
F 4 HOH G 6 606 25 HOH HOH . 
F 4 HOH G 7 607 35 HOH HOH . 
F 4 HOH G 8 608 52 HOH HOH . 
F 4 HOH G 9 609 140 HOH HOH . 
F 4 HOH G 10 610 86 HOH HOH . 
F 4 HOH G 11 611 5 HOH HOH . 
F 4 HOH G 12 612 26 HOH HOH . 
F 4 HOH G 13 613 46 HOH HOH . 
F 4 HOH G 14 614 27 HOH HOH . 
F 4 HOH G 15 615 109 HOH HOH . 
F 4 HOH G 16 616 48 HOH HOH . 
F 4 HOH G 17 617 146 HOH HOH . 
F 4 HOH G 18 618 132 HOH HOH . 
F 4 HOH G 19 619 57 HOH HOH . 
F 4 HOH G 20 620 119 HOH HOH . 
F 4 HOH G 21 621 74 HOH HOH . 
F 4 HOH G 22 622 118 HOH HOH . 
F 4 HOH G 23 623 121 HOH HOH . 
F 4 HOH G 24 624 147 HOH HOH . 
F 4 HOH G 25 625 112 HOH HOH . 
F 4 HOH G 26 626 89 HOH HOH . 
F 4 HOH G 27 627 69 HOH HOH . 
F 4 HOH G 28 628 159 HOH HOH . 
F 4 HOH G 29 629 97 HOH HOH . 
F 4 HOH G 30 630 129 HOH HOH . 
F 4 HOH G 31 631 6 HOH HOH . 
F 4 HOH G 32 632 8 HOH HOH . 
F 4 HOH G 33 633 7 HOH HOH . 
F 4 HOH G 34 634 68 HOH HOH . 
F 4 HOH G 35 635 64 HOH HOH . 
F 4 HOH G 36 636 84 HOH HOH . 
F 4 HOH G 37 637 65 HOH HOH . 
F 4 HOH G 38 638 13 HOH HOH . 
F 4 HOH G 39 639 55 HOH HOH . 
F 4 HOH G 40 640 67 HOH HOH . 
F 4 HOH G 41 641 50 HOH HOH . 
F 4 HOH G 42 642 161 HOH HOH . 
F 4 HOH G 43 643 21 HOH HOH . 
F 4 HOH G 44 644 3 HOH HOH . 
F 4 HOH G 45 645 93 HOH HOH . 
F 4 HOH G 46 646 95 HOH HOH . 
F 4 HOH G 47 647 156 HOH HOH . 
F 4 HOH G 48 648 62 HOH HOH . 
F 4 HOH G 49 649 76 HOH HOH . 
F 4 HOH G 50 650 39 HOH HOH . 
F 4 HOH G 51 651 11 HOH HOH . 
F 4 HOH G 52 652 116 HOH HOH . 
F 4 HOH G 53 653 42 HOH HOH . 
F 4 HOH G 54 654 19 HOH HOH . 
F 4 HOH G 55 655 61 HOH HOH . 
F 4 HOH G 56 656 127 HOH HOH . 
F 4 HOH G 57 657 138 HOH HOH . 
F 4 HOH G 58 658 29 HOH HOH . 
F 4 HOH G 59 659 152 HOH HOH . 
F 4 HOH G 60 660 106 HOH HOH . 
F 4 HOH G 61 661 115 HOH HOH . 
F 4 HOH G 62 662 9 HOH HOH . 
F 4 HOH G 63 663 75 HOH HOH . 
F 4 HOH G 64 664 167 HOH HOH . 
F 4 HOH G 65 665 88 HOH HOH . 
F 4 HOH G 66 666 51 HOH HOH . 
F 4 HOH G 67 667 133 HOH HOH . 
F 4 HOH G 68 668 70 HOH HOH . 
F 4 HOH G 69 669 120 HOH HOH . 
F 4 HOH G 70 670 143 HOH HOH . 
F 4 HOH G 71 671 145 HOH HOH . 
F 4 HOH G 72 672 91 HOH HOH . 
F 4 HOH G 73 673 157 HOH HOH . 
F 4 HOH G 74 674 73 HOH HOH . 
F 4 HOH G 75 675 154 HOH HOH . 
F 4 HOH G 76 676 128 HOH HOH . 
F 4 HOH G 77 677 166 HOH HOH . 
F 4 HOH G 78 678 162 HOH HOH . 
F 4 HOH G 79 679 149 HOH HOH . 
G 4 HOH A 1 701 72 HOH HOH . 
G 4 HOH A 2 702 113 HOH HOH . 
G 4 HOH A 3 703 96 HOH HOH . 
G 4 HOH A 4 704 139 HOH HOH . 
G 4 HOH A 5 705 60 HOH HOH . 
G 4 HOH A 6 706 87 HOH HOH . 
G 4 HOH A 7 707 94 HOH HOH . 
G 4 HOH A 8 708 131 HOH HOH . 
G 4 HOH A 9 709 142 HOH HOH . 
G 4 HOH A 10 710 49 HOH HOH . 
G 4 HOH A 11 711 135 HOH HOH . 
G 4 HOH A 12 712 23 HOH HOH . 
G 4 HOH A 13 713 14 HOH HOH . 
G 4 HOH A 14 714 59 HOH HOH . 
G 4 HOH A 15 715 123 HOH HOH . 
G 4 HOH A 16 716 17 HOH HOH . 
G 4 HOH A 17 717 2 HOH HOH . 
G 4 HOH A 18 718 28 HOH HOH . 
G 4 HOH A 19 719 79 HOH HOH . 
G 4 HOH A 20 720 41 HOH HOH . 
G 4 HOH A 21 721 90 HOH HOH . 
G 4 HOH A 22 722 1 HOH HOH . 
G 4 HOH A 23 723 31 HOH HOH . 
G 4 HOH A 24 724 34 HOH HOH . 
G 4 HOH A 25 725 24 HOH HOH . 
G 4 HOH A 26 726 10 HOH HOH . 
G 4 HOH A 27 727 43 HOH HOH . 
G 4 HOH A 28 728 18 HOH HOH . 
G 4 HOH A 29 729 110 HOH HOH . 
G 4 HOH A 30 730 33 HOH HOH . 
G 4 HOH A 31 731 56 HOH HOH . 
G 4 HOH A 32 732 134 HOH HOH . 
G 4 HOH A 33 733 130 HOH HOH . 
G 4 HOH A 34 734 63 HOH HOH . 
G 4 HOH A 35 735 12 HOH HOH . 
G 4 HOH A 36 736 81 HOH HOH . 
G 4 HOH A 37 737 158 HOH HOH . 
G 4 HOH A 38 738 45 HOH HOH . 
G 4 HOH A 39 739 4 HOH HOH . 
G 4 HOH A 40 740 77 HOH HOH . 
G 4 HOH A 41 741 160 HOH HOH . 
G 4 HOH A 42 742 54 HOH HOH . 
G 4 HOH A 43 743 20 HOH HOH . 
G 4 HOH A 44 744 101 HOH HOH . 
G 4 HOH A 45 745 80 HOH HOH . 
G 4 HOH A 46 746 125 HOH HOH . 
G 4 HOH A 47 747 124 HOH HOH . 
G 4 HOH A 48 748 36 HOH HOH . 
G 4 HOH A 49 749 103 HOH HOH . 
G 4 HOH A 50 750 92 HOH HOH . 
G 4 HOH A 51 751 141 HOH HOH . 
G 4 HOH A 52 752 22 HOH HOH . 
G 4 HOH A 53 753 78 HOH HOH . 
G 4 HOH A 54 754 117 HOH HOH . 
G 4 HOH A 55 755 102 HOH HOH . 
G 4 HOH A 56 756 16 HOH HOH . 
G 4 HOH A 57 757 53 HOH HOH . 
G 4 HOH A 58 758 47 HOH HOH . 
G 4 HOH A 59 759 15 HOH HOH . 
G 4 HOH A 60 760 111 HOH HOH . 
G 4 HOH A 61 761 122 HOH HOH . 
G 4 HOH A 62 762 105 HOH HOH . 
G 4 HOH A 63 763 30 HOH HOH . 
G 4 HOH A 64 764 82 HOH HOH . 
G 4 HOH A 65 765 58 HOH HOH . 
G 4 HOH A 66 766 98 HOH HOH . 
G 4 HOH A 67 767 38 HOH HOH . 
G 4 HOH A 68 768 83 HOH HOH . 
G 4 HOH A 69 769 108 HOH HOH . 
G 4 HOH A 70 770 144 HOH HOH . 
G 4 HOH A 71 771 163 HOH HOH . 
G 4 HOH A 72 772 37 HOH HOH . 
G 4 HOH A 73 773 150 HOH HOH . 
G 4 HOH A 74 774 107 HOH HOH . 
G 4 HOH A 75 775 66 HOH HOH . 
G 4 HOH A 76 776 153 HOH HOH . 
G 4 HOH A 77 777 40 HOH HOH . 
G 4 HOH A 78 778 164 HOH HOH . 
G 4 HOH A 79 779 85 HOH HOH . 
G 4 HOH A 80 780 148 HOH HOH . 
G 4 HOH A 81 781 165 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 PLP . . . C 2 -46.731 54.325 22.438 1 23.57 ? N1 PLP 501 G 1 
HETATM 2 C C2 PLP . . . C 2 -46.998 53.17 21.818 1 25.72 ? C2 PLP 501 G 1 
HETATM 3 C C2A PLP . . . C 2 -48.3 52.414 22.144 1 24.48 ? C2A PLP 501 G 1 
HETATM 4 C C3 PLP . . . C 2 -46.251 52.764 21.051 1 28.15 ? C3 PLP 501 G 1 
HETATM 5 O O3 PLP . . . C 2 -46.553 51.554 20.418 1 26.42 ? O3 PLP 501 G 1 
HETATM 6 C C4 PLP . . . C 2 -44.964 53.435 20.68 1 22.75 ? C4 PLP 501 G 1 
HETATM 7 C C4A PLP . . . C 2 -44.087 52.769 19.632 1 27.77 ? C4A PLP 501 G 1 
HETATM 8 C C5 PLP . . . C 2 -44.631 54.434 21.14 1 23.36 ? C5 PLP 501 G 1 
HETATM 9 C C6 PLP . . . C 2 -45.456 55.044 22.102 1 23.67 ? C6 PLP 501 G 1 
HETATM 10 C C5A PLP . . . C 2 -43.298 55.098 20.757 1 18.63 ? C5A PLP 501 G 1 
HETATM 11 O O4P PLP . . . C 2 -43.421 55.795 19.553 1 16.16 ? O4P PLP 501 G 1 
HETATM 12 P P PLP . . . C 2 -42.101 55.933 18.579 1 15.48 ? P PLP 501 G 1 
HETATM 13 O O1P PLP . . . C 2 -42.461 56.711 17.342 1 14.52 ? O1P PLP 501 G 1 
HETATM 14 O O2P PLP . . . C 2 -40.976 56.642 19.283 1 13.57 ? O2P PLP 501 G 1 
HETATM 15 O O3P PLP . . . C 2 -41.623 54.56 18.197 1 18.85 ? O3P PLP 501 G 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    93 
_model_server_stats.query_time_ms           587 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           15 
#