data_8BIV
#
_model_server_result.job_id            EcuLiNguXoEl0Mq2ETDfyw 
_model_server_result.datetime_utc      '2024-11-15 15:27:47' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8biv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":502}' 
#
_entry.id    8BIV 
#
_exptl.entry_id    8BIV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            8BIV 
_cell.length_a            157.738 
_cell.length_b            157.738 
_cell.length_c            93.331 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8BIV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        150 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 3 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 5_556 x-y,-y,-z+1 1 0 0 0 -1 0 0 0 -1 0 0 93.331 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A NZ LYS 230 A LYS 230 1_555 C C4A PLP . A PLP 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.272 ? 
covale ? covale2 B NZ LYS 230 E LYS 230 1_555 E C4A PLP . E PLP 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.27 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     8BIV 
_atom_sites.fract_transf_matrix[1][1]    0.00634 
_atom_sites.fract_transf_matrix[1][2]    0.00366 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00732 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010715 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 PLP A 1 501 519 PLP PLP . 
D 3 GOL A 1 502 601 GOL GOL . 
E 2 PLP E 1 501 519 PLP PLP . 
F 3 GOL E 1 502 601 GOL GOL . 
G 4 HOH A 1 601 266 HOH HOH . 
G 4 HOH A 2 602 278 HOH HOH . 
G 4 HOH A 3 603 148 HOH HOH . 
G 4 HOH A 4 604 515 HOH HOH . 
G 4 HOH A 5 605 20 HOH HOH . 
G 4 HOH A 6 606 268 HOH HOH . 
G 4 HOH A 7 607 118 HOH HOH . 
G 4 HOH A 8 608 52 HOH HOH . 
G 4 HOH A 9 609 235 HOH HOH . 
G 4 HOH A 10 610 509 HOH HOH . 
G 4 HOH A 11 611 196 HOH HOH . 
G 4 HOH A 12 612 88 HOH HOH . 
G 4 HOH A 13 613 4 HOH HOH . 
G 4 HOH A 14 614 512 HOH HOH . 
G 4 HOH A 15 615 48 HOH HOH . 
G 4 HOH A 16 616 23 HOH HOH . 
G 4 HOH A 17 617 187 HOH HOH . 
G 4 HOH A 18 618 124 HOH HOH . 
G 4 HOH A 19 619 82 HOH HOH . 
G 4 HOH A 20 620 128 HOH HOH . 
G 4 HOH A 21 621 37 HOH HOH . 
G 4 HOH A 22 622 40 HOH HOH . 
G 4 HOH A 23 623 16 HOH HOH . 
G 4 HOH A 24 624 14 HOH HOH . 
G 4 HOH A 25 625 113 HOH HOH . 
G 4 HOH A 26 626 323 HOH HOH . 
G 4 HOH A 27 627 59 HOH HOH . 
G 4 HOH A 28 628 9 HOH HOH . 
G 4 HOH A 29 629 71 HOH HOH . 
G 4 HOH A 30 630 314 HOH HOH . 
G 4 HOH A 31 631 296 HOH HOH . 
G 4 HOH A 32 632 87 HOH HOH . 
G 4 HOH A 33 633 344 HOH HOH . 
G 4 HOH A 34 634 53 HOH HOH . 
G 4 HOH A 35 635 15 HOH HOH . 
G 4 HOH A 36 636 269 HOH HOH . 
G 4 HOH A 37 637 346 HOH HOH . 
G 4 HOH A 38 638 27 HOH HOH . 
G 4 HOH A 39 639 24 HOH HOH . 
G 4 HOH A 40 640 513 HOH HOH . 
G 4 HOH A 41 641 172 HOH HOH . 
G 4 HOH A 42 642 60 HOH HOH . 
G 4 HOH A 43 643 51 HOH HOH . 
G 4 HOH A 44 644 139 HOH HOH . 
G 4 HOH A 45 645 161 HOH HOH . 
G 4 HOH A 46 646 245 HOH HOH . 
G 4 HOH A 47 647 290 HOH HOH . 
G 4 HOH A 48 648 313 HOH HOH . 
G 4 HOH A 49 649 348 HOH HOH . 
G 4 HOH A 50 650 21 HOH HOH . 
G 4 HOH A 51 651 282 HOH HOH . 
G 4 HOH A 52 652 237 HOH HOH . 
G 4 HOH A 53 653 185 HOH HOH . 
G 4 HOH A 54 654 117 HOH HOH . 
G 4 HOH A 55 655 65 HOH HOH . 
G 4 HOH A 56 656 135 HOH HOH . 
G 4 HOH A 57 657 212 HOH HOH . 
G 4 HOH A 58 658 122 HOH HOH . 
G 4 HOH A 59 659 203 HOH HOH . 
G 4 HOH A 60 660 126 HOH HOH . 
G 4 HOH A 61 661 110 HOH HOH . 
G 4 HOH A 62 662 138 HOH HOH . 
G 4 HOH A 63 663 304 HOH HOH . 
G 4 HOH A 64 664 2 HOH HOH . 
G 4 HOH A 65 665 67 HOH HOH . 
G 4 HOH A 66 666 438 HOH HOH . 
G 4 HOH A 67 667 100 HOH HOH . 
G 4 HOH A 68 668 80 HOH HOH . 
G 4 HOH A 69 669 165 HOH HOH . 
G 4 HOH A 70 670 5 HOH HOH . 
G 4 HOH A 71 671 233 HOH HOH . 
G 4 HOH A 72 672 328 HOH HOH . 
G 4 HOH A 73 673 163 HOH HOH . 
G 4 HOH A 74 674 402 HOH HOH . 
G 4 HOH A 75 675 91 HOH HOH . 
G 4 HOH A 76 676 3 HOH HOH . 
G 4 HOH A 77 677 104 HOH HOH . 
G 4 HOH A 78 678 34 HOH HOH . 
G 4 HOH A 79 679 191 HOH HOH . 
G 4 HOH A 80 680 29 HOH HOH . 
G 4 HOH A 81 681 171 HOH HOH . 
G 4 HOH A 82 682 246 HOH HOH . 
G 4 HOH A 83 683 137 HOH HOH . 
G 4 HOH A 84 684 66 HOH HOH . 
G 4 HOH A 85 685 140 HOH HOH . 
G 4 HOH A 86 686 280 HOH HOH . 
G 4 HOH A 87 687 106 HOH HOH . 
G 4 HOH A 88 688 299 HOH HOH . 
G 4 HOH A 89 689 358 HOH HOH . 
G 4 HOH A 90 690 310 HOH HOH . 
G 4 HOH A 91 691 177 HOH HOH . 
G 4 HOH A 92 692 63 HOH HOH . 
G 4 HOH A 93 693 54 HOH HOH . 
G 4 HOH A 94 694 195 HOH HOH . 
G 4 HOH A 95 695 42 HOH HOH . 
G 4 HOH A 96 696 99 HOH HOH . 
G 4 HOH A 97 697 294 HOH HOH . 
G 4 HOH A 98 698 238 HOH HOH . 
G 4 HOH A 99 699 174 HOH HOH . 
G 4 HOH A 100 700 208 HOH HOH . 
G 4 HOH A 101 701 149 HOH HOH . 
G 4 HOH A 102 702 410 HOH HOH . 
G 4 HOH A 103 703 284 HOH HOH . 
G 4 HOH A 104 704 74 HOH HOH . 
G 4 HOH A 105 705 330 HOH HOH . 
G 4 HOH A 106 706 223 HOH HOH . 
G 4 HOH A 107 707 83 HOH HOH . 
G 4 HOH A 108 708 273 HOH HOH . 
G 4 HOH A 109 709 263 HOH HOH . 
G 4 HOH A 110 710 134 HOH HOH . 
G 4 HOH A 111 711 309 HOH HOH . 
G 4 HOH A 112 712 421 HOH HOH . 
G 4 HOH A 113 713 224 HOH HOH . 
G 4 HOH A 114 714 197 HOH HOH . 
G 4 HOH A 115 715 10 HOH HOH . 
G 4 HOH A 116 716 35 HOH HOH . 
G 4 HOH A 117 717 114 HOH HOH . 
G 4 HOH A 118 718 46 HOH HOH . 
G 4 HOH A 119 719 271 HOH HOH . 
G 4 HOH A 120 720 181 HOH HOH . 
G 4 HOH A 121 721 500 HOH HOH . 
G 4 HOH A 122 722 250 HOH HOH . 
G 4 HOH A 123 723 352 HOH HOH . 
G 4 HOH A 124 724 396 HOH HOH . 
G 4 HOH A 125 725 190 HOH HOH . 
H 4 HOH E 1 601 267 HOH HOH . 
H 4 HOH E 2 602 93 HOH HOH . 
H 4 HOH E 3 603 287 HOH HOH . 
H 4 HOH E 4 604 70 HOH HOH . 
H 4 HOH E 5 605 41 HOH HOH . 
H 4 HOH E 6 606 130 HOH HOH . 
H 4 HOH E 7 607 143 HOH HOH . 
H 4 HOH E 8 608 45 HOH HOH . 
H 4 HOH E 9 609 136 HOH HOH . 
H 4 HOH E 10 610 249 HOH HOH . 
H 4 HOH E 11 611 121 HOH HOH . 
H 4 HOH E 12 612 105 HOH HOH . 
H 4 HOH E 13 613 125 HOH HOH . 
H 4 HOH E 14 614 226 HOH HOH . 
H 4 HOH E 15 615 75 HOH HOH . 
H 4 HOH E 16 616 510 HOH HOH . 
H 4 HOH E 17 617 270 HOH HOH . 
H 4 HOH E 18 618 298 HOH HOH . 
H 4 HOH E 19 619 72 HOH HOH . 
H 4 HOH E 20 620 109 HOH HOH . 
H 4 HOH E 21 621 295 HOH HOH . 
H 4 HOH E 22 622 145 HOH HOH . 
H 4 HOH E 23 623 157 HOH HOH . 
H 4 HOH E 24 624 26 HOH HOH . 
H 4 HOH E 25 625 419 HOH HOH . 
H 4 HOH E 26 626 50 HOH HOH . 
H 4 HOH E 27 627 192 HOH HOH . 
H 4 HOH E 28 628 514 HOH HOH . 
H 4 HOH E 29 629 325 HOH HOH . 
H 4 HOH E 30 630 49 HOH HOH . 
H 4 HOH E 31 631 36 HOH HOH . 
H 4 HOH E 32 632 43 HOH HOH . 
H 4 HOH E 33 633 316 HOH HOH . 
H 4 HOH E 34 634 17 HOH HOH . 
H 4 HOH E 35 635 12 HOH HOH . 
H 4 HOH E 36 636 8 HOH HOH . 
H 4 HOH E 37 637 30 HOH HOH . 
H 4 HOH E 38 638 7 HOH HOH . 
H 4 HOH E 39 639 81 HOH HOH . 
H 4 HOH E 40 640 516 HOH HOH . 
H 4 HOH E 41 641 68 HOH HOH . 
H 4 HOH E 42 642 84 HOH HOH . 
H 4 HOH E 43 643 28 HOH HOH . 
H 4 HOH E 44 644 25 HOH HOH . 
H 4 HOH E 45 645 57 HOH HOH . 
H 4 HOH E 46 646 47 HOH HOH . 
H 4 HOH E 47 647 116 HOH HOH . 
H 4 HOH E 48 648 357 HOH HOH . 
H 4 HOH E 49 649 92 HOH HOH . 
H 4 HOH E 50 650 77 HOH HOH . 
H 4 HOH E 51 651 200 HOH HOH . 
H 4 HOH E 52 652 32 HOH HOH . 
H 4 HOH E 53 653 175 HOH HOH . 
H 4 HOH E 54 654 215 HOH HOH . 
H 4 HOH E 55 655 326 HOH HOH . 
H 4 HOH E 56 656 517 HOH HOH . 
H 4 HOH E 57 657 101 HOH HOH . 
H 4 HOH E 58 658 293 HOH HOH . 
H 4 HOH E 59 659 61 HOH HOH . 
H 4 HOH E 60 660 169 HOH HOH . 
H 4 HOH E 61 661 19 HOH HOH . 
H 4 HOH E 62 662 210 HOH HOH . 
H 4 HOH E 63 663 144 HOH HOH . 
H 4 HOH E 64 664 242 HOH HOH . 
H 4 HOH E 65 665 511 HOH HOH . 
H 4 HOH E 66 666 79 HOH HOH . 
H 4 HOH E 67 667 286 HOH HOH . 
H 4 HOH E 68 668 38 HOH HOH . 
H 4 HOH E 69 669 55 HOH HOH . 
H 4 HOH E 70 670 147 HOH HOH . 
H 4 HOH E 71 671 213 HOH HOH . 
H 4 HOH E 72 672 232 HOH HOH . 
H 4 HOH E 73 673 58 HOH HOH . 
H 4 HOH E 74 674 291 HOH HOH . 
H 4 HOH E 75 675 6 HOH HOH . 
H 4 HOH E 76 676 133 HOH HOH . 
H 4 HOH E 77 677 167 HOH HOH . 
H 4 HOH E 78 678 1 HOH HOH . 
H 4 HOH E 79 679 202 HOH HOH . 
H 4 HOH E 80 680 156 HOH HOH . 
H 4 HOH E 81 681 85 HOH HOH . 
H 4 HOH E 82 682 18 HOH HOH . 
H 4 HOH E 83 683 127 HOH HOH . 
H 4 HOH E 84 684 115 HOH HOH . 
H 4 HOH E 85 685 33 HOH HOH . 
H 4 HOH E 86 686 364 HOH HOH . 
H 4 HOH E 87 687 329 HOH HOH . 
H 4 HOH E 88 688 86 HOH HOH . 
H 4 HOH E 89 689 311 HOH HOH . 
H 4 HOH E 90 690 183 HOH HOH . 
H 4 HOH E 91 691 216 HOH HOH . 
H 4 HOH E 92 692 234 HOH HOH . 
H 4 HOH E 93 693 166 HOH HOH . 
H 4 HOH E 94 694 64 HOH HOH . 
H 4 HOH E 95 695 347 HOH HOH . 
H 4 HOH E 96 696 73 HOH HOH . 
H 4 HOH E 97 697 184 HOH HOH . 
H 4 HOH E 98 698 519 HOH HOH . 
H 4 HOH E 99 699 518 HOH HOH . 
H 4 HOH E 100 700 274 HOH HOH . 
H 4 HOH E 101 701 307 HOH HOH . 
H 4 HOH E 102 702 62 HOH HOH . 
H 4 HOH E 103 703 155 HOH HOH . 
H 4 HOH E 104 704 89 HOH HOH . 
H 4 HOH E 105 705 90 HOH HOH . 
H 4 HOH E 106 706 129 HOH HOH . 
H 4 HOH E 107 707 170 HOH HOH . 
H 4 HOH E 108 708 182 HOH HOH . 
H 4 HOH E 109 709 102 HOH HOH . 
H 4 HOH E 110 710 103 HOH HOH . 
H 4 HOH E 111 711 142 HOH HOH . 
H 4 HOH E 112 712 94 HOH HOH . 
H 4 HOH E 113 713 179 HOH HOH . 
H 4 HOH E 114 714 214 HOH HOH . 
H 4 HOH E 115 715 176 HOH HOH . 
H 4 HOH E 116 716 11 HOH HOH . 
H 4 HOH E 117 717 119 HOH HOH . 
H 4 HOH E 118 718 76 HOH HOH . 
H 4 HOH E 119 719 324 HOH HOH . 
H 4 HOH E 120 720 283 HOH HOH . 
H 4 HOH E 121 721 351 HOH HOH . 
H 4 HOH E 122 722 230 HOH HOH . 
H 4 HOH E 123 723 507 HOH HOH . 
H 4 HOH E 124 724 457 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 3 -85.085 -15.952 29.411 0.61 30.52 ? C1 GOL 502 A 1 
HETATM 2 O O1 GOL . . . D 3 -86.066 -16.23 28.415 0.61 30.57 ? O1 GOL 502 A 1 
HETATM 3 C C2 GOL . . . D 3 -85.517 -14.824 30.322 0.61 30.49 ? C2 GOL 502 A 1 
HETATM 4 O O2 GOL . . . D 3 -86.927 -14.89 30.539 0.61 30.21 ? O2 GOL 502 A 1 
HETATM 5 C C3 GOL . . . D 3 -85.139 -13.451 29.807 0.61 30.94 ? C3 GOL 502 A 1 
HETATM 6 O O3 GOL . . . D 3 -86.054 -12.978 28.82 0.61 31.51 ? O3 GOL 502 A 1 
#
_model_server_stats.io_time_ms              22 
_model_server_stats.parse_time_ms           22 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           274 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           6 
#